RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TNRQ92752 1358 aa16.99■□□□□ 0.31
CPSF1-203ENST00000527916 POLR1AO95602 1720 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-203ENST00000527916 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-203ENST00000527916 NEURL4Q96JN8 1562 aa16.95■□□□□ 0.3
CPSF1-203ENST00000527916 MTUS2Q5JR59 1369 aa16.95■□□□□ 0.3
CPSF1-203ENST00000527916 DHX29Q7Z478 1369 aaKnown RBP16.94■□□□□ 0.3
CPSF1-203ENST00000527916 FBXO31Q5XUX0 539 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-203ENST00000527916 RTEL1-TNFRSF6BF6WH68 1400 aa16.94■□□□□ 0.3
CPSF1-203ENST00000527916 KIF3BO15066 747 aa16.93■□□□□ 0.3
CPSF1-203ENST00000527916 WASHC2CQ9Y4E1 1318 aa16.93■□□□□ 0.3
CPSF1-203ENST00000527916 PZPP20742 1482 aa16.93■□□□□ 0.3
CPSF1-203ENST00000527916 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.92■□□□□ 0.3
CPSF1-203ENST00000527916 FAM135AQ9P2D6 1515 aa16.91■□□□□ 0.3
CPSF1-203ENST00000527916 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-203ENST00000527916 KDM5DQ9BY66 1539 aa16.91■□□□□ 0.3
CPSF1-203ENST00000527916 VWDEQ8N2E2 1590 aa16.9■□□□□ 0.3
CPSF1-203ENST00000527916 NPHP4O75161 1426 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-203ENST00000527916 NLRP1Q9C000 1473 aa16.9■□□□□ 0.3
CPSF1-203ENST00000527916 MIA2Q96PC5 1412 aa16.89■□□□□ 0.29
CPSF1-203ENST00000527916 MED14O60244 1454 aa16.89■□□□□ 0.29
CPSF1-203ENST00000527916 MBD5Q9P267 1494 aa16.89■□□□□ 0.29
CPSF1-203ENST00000527916 UGGT1Q9NYU2 1555 aa16.88■□□□□ 0.29
CPSF1-203ENST00000527916 DEPDC5O75140 1603 aa16.88■□□□□ 0.29
CPSF1-203ENST00000527916 RSPH4AQ5TD94 716 aa16.86■□□□□ 0.29
CPSF1-203ENST00000527916 SENP3Q9H4L4 574 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-203ENST00000527916 TIAM1Q13009 1591 aa16.85■□□□□ 0.29
CPSF1-203ENST00000527916 ALKQ9UM73 1620 aa16.85■□□□□ 0.29
CPSF1-203ENST00000527916 IQGAP1P46940 1657 aa16.84■□□□□ 0.29
CPSF1-203ENST00000527916 CCDC141Q6ZP82 1450 aa16.83■□□□□ 0.28
CPSF1-203ENST00000527916 LRRC7Q96NW7 1537 aa16.82■□□□□ 0.28
CPSF1-203ENST00000527916 RNF17Q9BXT8 1623 aaKnown RBP16.81■□□□□ 0.28
CPSF1-203ENST00000527916 EHBP1L1Q8N3D4 1523 aa16.81■□□□□ 0.28
CPSF1-203ENST00000527916 SYNMO15061 1565 aa16.81■□□□□ 0.28
CPSF1-203ENST00000527916 CEP162Q5TB80 1403 aa16.8■□□□□ 0.28
CPSF1-203ENST00000527916 TSPY4P0CV99 314 aa16.79■□□□□ 0.28
CPSF1-203ENST00000527916 TSPY10P0CW01 314 aa16.79■□□□□ 0.28
CPSF1-203ENST00000527916 STRCP1A6NGW2 1772 aa16.77■□□□□ 0.27
CPSF1-203ENST00000527916 RGS17Q9UGC6 210 aaPredicted RBP16.76■□□□□ 0.27
CPSF1-203ENST00000527916 CAMSAP2Q08AD1 1489 aa16.75■□□□□ 0.27
CPSF1-203ENST00000527916 SCAF11Q99590 1463 aaKnown RBP16.73■□□□□ 0.27
CPSF1-203ENST00000527916 ZC3H13Q5T200 1668 aaKnown RBP16.72■□□□□ 0.27
CPSF1-203ENST00000527916 ABCC3O15438 1527 aa16.72■□□□□ 0.27
CPSF1-203ENST00000527916 ERVK-7P63135 1459 aa16.72■□□□□ 0.27
CPSF1-203ENST00000527916 LOC105371045A0A1W2PR82 267 aa16.71■□□□□ 0.27
CPSF1-203ENST00000527916 TXNDC2Q86VQ3 553 aa16.71■□□□□ 0.27
CPSF1-203ENST00000527916 NCOA2Q15596 1464 aa16.71■□□□□ 0.27
CPSF1-203ENST00000527916 ARHGEF5Q12774 1597 aa16.71■□□□□ 0.27
CPSF1-203ENST00000527916 EID1Q9Y6B2 187 aa16.7■□□□□ 0.26
CPSF1-203ENST00000527916 FAM135BQ49AJ0 1406 aa16.69■□□□□ 0.26
CPSF1-203ENST00000527916 CFAP65Q6ZU64 1925 aaKnown RBP16.68■□□□□ 0.26
CPSF1-203ENST00000527916 UBR1Q8IWV7 1749 aa16.68■□□□□ 0.26
CPSF1-203ENST00000527916 LTKP29376 864 aa16.67■□□□□ 0.26
CPSF1-203ENST00000527916 POTEAQ6S8J7 498 aa16.66■□□□□ 0.26
CPSF1-203ENST00000527916 EIF2AK4Q9P2K8 1649 aaKnown RBP16.65■□□□□ 0.26
CPSF1-203ENST00000527916 ARHGAP23Q9P227 1491 aa16.65■□□□□ 0.26
CPSF1-203ENST00000527916 SLIT1O75093 1534 aa16.65■□□□□ 0.26
CPSF1-203ENST00000527916 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
CPSF1-203ENST00000527916 STAG3Q9UJ98 1225 aa16.63■□□□□ 0.25
CPSF1-203ENST00000527916 XIRP1Q702N8 1843 aaKnown RBP16.63■□□□□ 0.25
CPSF1-203ENST00000527916 MAST1Q9Y2H9 1570 aa16.62■□□□□ 0.25
CPSF1-203ENST00000527916 TMEM94Q12767 1356 aa16.62■□□□□ 0.25
CPSF1-203ENST00000527916 CEP152O94986 1710 aa16.61■□□□□ 0.25
CPSF1-203ENST00000527916 ARHGAP31Q2M1Z3 1444 aa16.6■□□□□ 0.25
CPSF1-203ENST00000527916 MAP3K1Q13233 1512 aa16.6■□□□□ 0.25
CPSF1-203ENST00000527916 MROH1Q8NDA8 1641 aa16.59■□□□□ 0.25
CPSF1-203ENST00000527916 KCNA6P17658 529 aa16.59■□□□□ 0.25
CPSF1-203ENST00000527916 PROSER2Q86WR7 435 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-203ENST00000527916 TMEM2Q9UHN6 1383 aa16.59■□□□□ 0.25
CPSF1-203ENST00000527916 LRRC9Q6ZRR7 1453 aa16.58■□□□□ 0.24
CPSF1-203ENST00000527916 DUOX2Q9NRD8 1548 aa16.58■□□□□ 0.24
CPSF1-203ENST00000527916 ROBO1Q9Y6N7 1651 aa16.57■□□□□ 0.24
CPSF1-203ENST00000527916 PIK3C2BO00750 1634 aa16.54■□□□□ 0.24
CPSF1-203ENST00000527916 MYOM3Q5VTT5 1437 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 MSH6P52701 1360 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 KANK1Q14678 1352 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 JCADQ9P266 1359 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 SLC26A8Q96RN1 970 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.53■□□□□ 0.243e-8■■■■□ 26.6
CPSF1-203ENST00000527916 PRDM15P57071 1507 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-203ENST00000527916 EFCAB6Q5THR3 1501 aa16.53■□□□□ 0.24
CPSF1-203ENST00000527916 KIF15Q9NS87 1388 aa16.52■□□□□ 0.24
CPSF1-203ENST00000527916 RBM33Q96EV2 1170 aaKnown RBP16.52■□□□□ 0.24
CPSF1-203ENST00000527916 SLAIN2Q9P270 581 aa16.52■□□□□ 0.24
CPSF1-203ENST00000527916 ERBINQ96RT1 1412 aa16.52■□□□□ 0.23
CPSF1-203ENST00000527916 KDM5AP29375 1690 aaKnown RBP16.51■□□□□ 0.23
CPSF1-203ENST00000527916 NKTRP30414 1462 aaKnown RBP16.51■□□□□ 0.23
CPSF1-203ENST00000527916 BCANQ96GW7 911 aa16.51■□□□□ 0.23
CPSF1-203ENST00000527916 IDI1Q13907 227 aa16.5■□□□□ 0.23
CPSF1-203ENST00000527916 SETD1AO15047 1707 aaKnown RBP16.5■□□□□ 0.23
CPSF1-203ENST00000527916 PHLPP1O60346 1717 aa16.49■□□□□ 0.23
CPSF1-203ENST00000527916 KANK4Q5T7N3 995 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-203ENST00000527916 RRP7BPQ9NSQ0 103 aa16.49■□□□□ 0.23
CPSF1-203ENST00000527916 TET3O43151 1660 aa16.49■□□□□ 0.23
CPSF1-203ENST00000527916 MEX3CQ5U5Q3 659 aaKnown RBP16.48■□□□□ 0.23
CPSF1-203ENST00000527916 ZNF772Q68DY9 489 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-203ENST00000527916 NWD1Q149M9 1564 aa16.46■□□□□ 0.23
CPSF1-203ENST00000527916 SPATA31A6Q5VVP1 1343 aa16.45■□□□□ 0.22
CPSF1-203ENST00000527916 UPF1Q92900 1129 aaKnown RBP eCLIP16.45■□□□□ 0.22
CPSF1-203ENST00000527916 SLC52A1Q9NWF4 448 aa16.45■□□□□ 0.22
CPSF1-203ENST00000527916 APLP2Q06481 763 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms