RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRHP20396 242 aaPredicted RBP30.55■■■□□ 2.48
VPS28-208ENST00000527797 MAGI2Q86UL8 1455 aa30.53■■■□□ 2.48
VPS28-208ENST00000527797 FAM135AQ9P2D6 1515 aa30.53■■■□□ 2.48
VPS28-208ENST00000527797 KIF3BO15066 747 aa30.53■■■□□ 2.48
VPS28-208ENST00000527797 ZMYM4Q5VZL5 1548 aa30.52■■■□□ 2.48
VPS28-208ENST00000527797 TIMELESSQ9UNS1 1208 aa30.52■■■□□ 2.48
VPS28-208ENST00000527797 EIF2AK4Q9P2K8 1649 aaKnown RBP30.52■■■□□ 2.48
VPS28-208ENST00000527797 ANKRD30BQ9BXX2 1392 aa30.51■■■□□ 2.47
VPS28-208ENST00000527797 ABCA6Q8N139 1617 aa30.5■■■□□ 2.47
VPS28-208ENST00000527797 DIP2CQ9Y2E4 1556 aa30.47■■■□□ 2.47
VPS28-208ENST00000527797 IQGAP3Q86VI3 1631 aa30.47■■■□□ 2.47
VPS28-208ENST00000527797 YEATS2Q9ULM3 1422 aa30.46■■■□□ 2.47
VPS28-208ENST00000527797 COL17A1Q9UMD9 1497 aaPredicted RBP30.46■■■□□ 2.47
VPS28-208ENST00000527797 KANK1Q14678 1352 aa30.45■■■□□ 2.46
VPS28-208ENST00000527797 DEPDC5O75140 1603 aa30.44■■■□□ 2.46
VPS28-208ENST00000527797 TONSLQ96HA7 1378 aa30.4■■■□□ 2.46
VPS28-208ENST00000527797 ATP10AO60312 1499 aa30.38■■■□□ 2.45
VPS28-208ENST00000527797 PRDM15P57071 1507 aaPredicted RBP30.37■■■□□ 2.45
VPS28-208ENST00000527797 VWDEQ8N2E2 1590 aa30.35■■■□□ 2.45
VPS28-208ENST00000527797 BCORL1Q5H9F3 1711 aa30.35■■■□□ 2.45
VPS28-208ENST00000527797 MROH1Q8NDA8 1641 aa30.34■■■□□ 2.45
VPS28-208ENST00000527797 RNF17Q9BXT8 1623 aaKnown RBP30.34■■■□□ 2.45
VPS28-208ENST00000527797 RPRD2Q5VT52 1461 aaKnown RBP30.34■■■□□ 2.45
VPS28-208ENST00000527797 GGT6Q6P531 493 aa30.33■■■□□ 2.45
VPS28-208ENST00000527797 PPP1R15AO75807 674 aaPredicted RBP30.28■■■□□ 2.44
VPS28-208ENST00000527797 REREQ9P2R6 1566 aa30.28■■■□□ 2.44
VPS28-208ENST00000527797 TET3O43151 1660 aa30.26■■■□□ 2.44
VPS28-208ENST00000527797 LMTK2Q8IWU2 1503 aa30.25■■■□□ 2.43
VPS28-208ENST00000527797 ARHGEF40Q8TER5 1519 aa30.25■■■□□ 2.43
VPS28-208ENST00000527797 AGLP35573 1532 aa30.22■■■□□ 2.43
VPS28-208ENST00000527797 WASHC2CQ9Y4E1 1318 aa30.22■■■□□ 2.43
VPS28-208ENST00000527797 PLA2R1Q13018 1463 aa30.22■■■□□ 2.43
VPS28-208ENST00000527797 CCDC144AA2RUR9 1427 aa30.2■■■□□ 2.43
VPS28-208ENST00000527797 L3MBTL2Q969R5 705 aa30.2■■■□□ 2.43
VPS28-208ENST00000527797 E9PCH4 1651 aa30.2■■■□□ 2.42
VPS28-208ENST00000527797 EFCAB6Q5THR3 1501 aa30.16■■■□□ 2.42
VPS28-208ENST00000527797 ABCC3O15438 1527 aa30.16■■■□□ 2.42
VPS28-208ENST00000527797 PTPRTO14522 1441 aa30.15■■■□□ 2.42
VPS28-208ENST00000527797 CEP152O94986 1710 aa30.14■■■□□ 2.42
VPS28-208ENST00000527797 PPP6R1Q9UPN7 881 aa30.13■■■□□ 2.41
VPS28-208ENST00000527797 TRPM2O94759 1503 aa30.1■■■□□ 2.41
VPS28-208ENST00000527797 ZC3H13Q5T200 1668 aaKnown RBP30.08■■■□□ 2.41
VPS28-208ENST00000527797 NPATQ14207 1427 aa30.06■■■□□ 2.4
VPS28-208ENST00000527797 SPHKAPQ2M3C7 1700 aa30.06■■■□□ 2.4
VPS28-208ENST00000527797 SIGLEC1Q9BZZ2 1709 aa30.05■■■□□ 2.4
VPS28-208ENST00000527797 ZNF316A6NFI3 1004 aaPredicted RBP30.04■■■□□ 2.4
VPS28-208ENST00000527797 CAMSAP1Q5T5Y3 1602 aa30.04■■■□□ 2.4
VPS28-208ENST00000527797 ARHGAP31Q2M1Z3 1444 aa30.04■■■□□ 2.4
VPS28-208ENST00000527797 ARID4BQ4LE39 1312 aaPredicted RBP30.03■■■□□ 2.4
VPS28-208ENST00000527797 MLECQ14165 292 aa30.02■■■□□ 2.4
VPS28-208ENST00000527797 RGL3Q3MIN7 710 aa29.98■■■□□ 2.39
VPS28-208ENST00000527797 CNTLNQ9NXG0 1405 aa29.98■■■□□ 2.39
VPS28-208ENST00000527797 DCAF11Q8TEB1 546 aa29.96■■■□□ 2.39
VPS28-208ENST00000527797 CLTCL1P53675 1640 aa29.96■■■□□ 2.39
VPS28-208ENST00000527797 NBPF8Q3BBV2 869 aa29.95■■■□□ 2.38
VPS28-208ENST00000527797 ESF1Q9H501 851 aaKnown RBP29.95■■■□□ 2.38
VPS28-208ENST00000527797 NOS1P29475 1434 aa29.94■■■□□ 2.38
VPS28-208ENST00000527797 SPATA31E1Q6ZUB1 1445 aa29.93■■■□□ 2.38
VPS28-208ENST00000527797 KDM2AQ9Y2K7 1162 aa29.93■■■□□ 2.38
VPS28-208ENST00000527797 UHRF1BP1Q6BDS2 1440 aa29.9■■■□□ 2.38
VPS28-208ENST00000527797 ZNF326Q5BKZ1 582 aaKnown RBP29.89■■■□□ 2.37
VPS28-208ENST00000527797 UGGT1Q9NYU2 1555 aa29.88■■■□□ 2.37
VPS28-208ENST00000527797 CLTCQ00610 1675 aaKnown RBP29.87■■■□□ 2.37
VPS28-208ENST00000527797 NEURL4Q96JN8 1562 aa29.86■■■□□ 2.37
VPS28-208ENST00000527797 STAC3Q96MF2 364 aa29.83■■■□□ 2.37
VPS28-208ENST00000527797 SLC52A1Q9NWF4 448 aa29.82■■■□□ 2.36
VPS28-208ENST00000527797 FBXO31Q5XUX0 539 aaPredicted RBP29.82■■■□□ 2.36
VPS28-208ENST00000527797 SYNMO15061 1565 aa29.81■■■□□ 2.36
VPS28-208ENST00000527797 CFAP65Q6ZU64 1925 aaKnown RBP29.81■■■□□ 2.36
VPS28-208ENST00000527797 ZMYM3Q14202 1370 aa29.81■■■□□ 2.36
VPS28-208ENST00000527797 ERVK-7P63135 1459 aa29.8■■■□□ 2.36
VPS28-208ENST00000527797 CHGAP10645 457 aaKnown RBP29.8■■■□□ 2.36
VPS28-208ENST00000527797 PREX1Q8TCU6 1659 aa29.8■■■□□ 2.36
VPS28-208ENST00000527797 KIF1BO60333 1816 aa29.79■■■□□ 2.36
VPS28-208ENST00000527797 PRAG1Q86YV5 1406 aa29.78■■■□□ 2.36
VPS28-208ENST00000527797 PIK3C2BO00750 1634 aa29.77■■■□□ 2.36
VPS28-208ENST00000527797 IDI1Q13907 227 aa29.76■■■□□ 2.35
VPS28-208ENST00000527797 ADGRB3O60242 1522 aa29.76■■■□□ 2.35
VPS28-208ENST00000527797 RALGAPBQ86X10 1494 aa29.74■■■□□ 2.35
VPS28-208ENST00000527797 EIF4G2P78344 907 aaKnown RBP eCLIP29.74■■■□□ 2.35
VPS28-208ENST00000527797 SPATA31D1Q6ZQQ2 1576 aa29.73■■■□□ 2.35
VPS28-208ENST00000527797 RPGRIP1LQ68CZ1 1315 aa29.7■■■□□ 2.35
VPS28-208ENST00000527797 MROH2AA6NES4 1674 aa29.7■■■□□ 2.34
VPS28-208ENST00000527797 HSPA5P11021 654 aaKnown RBP29.69■■■□□ 2.34
VPS28-208ENST00000527797 HIRIP3Q9BW71 556 aaPredicted RBP29.69■■■□□ 2.34
VPS28-208ENST00000527797 MYOM2P54296 1465 aa29.66■■■□□ 2.34
VPS28-208ENST00000527797 CARD11Q9BXL7 1154 aa29.66■■■□□ 2.34
VPS28-208ENST00000527797 ROCK2O75116 1388 aaKnown RBP29.66■■■□□ 2.34
VPS28-208ENST00000527797 TRPM1Q7Z4N2 1603 aa29.63■■■□□ 2.33
VPS28-208ENST00000527797 DIEXFQ68CQ4 756 aaKnown RBP29.63■■■□□ 2.33
VPS28-208ENST00000527797 MADDQ8WXG6 1647 aa29.62■■■□□ 2.33
VPS28-208ENST00000527797 STAG3Q9UJ98 1225 aa29.62■■■□□ 2.33
VPS28-208ENST00000527797 TNRQ92752 1358 aa29.6■■■□□ 2.33
VPS28-208ENST00000527797 ADGRF5Q8IZF2 1346 aa29.6■■■□□ 2.33
VPS28-208ENST00000527797 NBPF1Q3BBV0 1214 aa29.6■■■□□ 2.33
VPS28-208ENST00000527797 FER1L4A9Z1Z3 1794 aa29.59■■■□□ 2.33
VPS28-208ENST00000527797 GPRASP1Q5JY77 1395 aa29.59■■■□□ 2.33
VPS28-208ENST00000527797 USP47Q96K76 1375 aa29.59■■■□□ 2.33
VPS28-208ENST00000527797 TMEM131LA2VDJ0 1609 aa29.59■■■□□ 2.33
VPS28-208ENST00000527797 IFT172Q9UG01 1749 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms