RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 TRIM26Q12899 539 aaPredicted RBP16.29■□□□□ 0.2
NEDD8-205ENST00000527046 GCC2Q8IWJ2 1684 aa16.29■□□□□ 0.2
NEDD8-205ENST00000527046 DEPDC5O75140 1603 aa16.29■□□□□ 0.2
NEDD8-205ENST00000527046 MADDQ8WXG6 1647 aa16.27■□□□□ 0.2
NEDD8-205ENST00000527046 VWDEQ8N2E2 1590 aa16.26■□□□□ 0.19
NEDD8-205ENST00000527046 PPP6R1Q9UPN7 881 aa16.26■□□□□ 0.19
NEDD8-205ENST00000527046 PRDM15P57071 1507 aaPredicted RBP16.24■□□□□ 0.19
NEDD8-205ENST00000527046 KDM5DQ9BY66 1539 aa16.24■□□□□ 0.19
NEDD8-205ENST00000527046 UNC13BO14795 1591 aa16.23■□□□□ 0.19
NEDD8-205ENST00000527046 SETD5Q9C0A6 1442 aa16.23■□□□□ 0.19
NEDD8-205ENST00000527046 FER1L4A9Z1Z3 1794 aa16.22■□□□□ 0.19
NEDD8-205ENST00000527046 ABCC3O15438 1527 aa16.21■□□□□ 0.19
NEDD8-205ENST00000527046 CEBPAP49715 358 aaPredicted RBP16.21■□□□□ 0.19
NEDD8-205ENST00000527046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.21■□□□□ 0.195e-11■■□□□ 14.2
NEDD8-205ENST00000527046 ZMYM3Q14202 1370 aa16.21■□□□□ 0.19
NEDD8-205ENST00000527046 PTPRMP28827 1452 aa16.21■□□□□ 0.19
NEDD8-205ENST00000527046 CLTCQ00610 1675 aaKnown RBP16.21■□□□□ 0.18
NEDD8-205ENST00000527046 RIMS1Q86UR5 1692 aaKnown RBP16.21■□□□□ 0.18
NEDD8-205ENST00000527046 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
NEDD8-205ENST00000527046 WASHC2CQ9Y4E1 1318 aa16.19■□□□□ 0.18
NEDD8-205ENST00000527046 CEP152O94986 1710 aa16.19■□□□□ 0.18
NEDD8-205ENST00000527046 LMTK2Q8IWU2 1503 aa16.19■□□□□ 0.18
NEDD8-205ENST00000527046 HRCP23327 699 aa16.18■□□□□ 0.18
NEDD8-205ENST00000527046 FAM135AQ9P2D6 1515 aa16.17■□□□□ 0.18
NEDD8-205ENST00000527046 CNTLNQ9NXG0 1405 aa16.17■□□□□ 0.18
NEDD8-205ENST00000527046 MROH2AA6NES4 1674 aa16.17■□□□□ 0.18
NEDD8-205ENST00000527046 C3P01024 1663 aa16.17■□□□□ 0.18
NEDD8-205ENST00000527046 PZPP20742 1482 aa16.16■□□□□ 0.18
NEDD8-205ENST00000527046 IQGAP3Q86VI3 1631 aa16.16■□□□□ 0.18
NEDD8-205ENST00000527046 NUP155O75694 1391 aa16.16■□□□□ 0.18
NEDD8-205ENST00000527046 FBXO31Q5XUX0 539 aaPredicted RBP16.16■□□□□ 0.18
NEDD8-205ENST00000527046 ZC3H13Q5T200 1668 aaKnown RBP16.14■□□□□ 0.18
NEDD8-205ENST00000527046 ARHGAP31Q2M1Z3 1444 aa16.14■□□□□ 0.17
NEDD8-205ENST00000527046 NPATQ14207 1427 aa16.13■□□□□ 0.17
NEDD8-205ENST00000527046 CAMSAP1Q5T5Y3 1602 aa16.13■□□□□ 0.17
NEDD8-205ENST00000527046 KANK1Q14678 1352 aa16.13■□□□□ 0.17
NEDD8-205ENST00000527046 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
NEDD8-205ENST00000527046 E9PCH4 1651 aa16.11■□□□□ 0.17
NEDD8-205ENST00000527046 TET3O43151 1660 aa16.11■□□□□ 0.17
NEDD8-205ENST00000527046 CFAP65Q6ZU64 1925 aaKnown RBP16.1■□□□□ 0.17
NEDD8-205ENST00000527046 TRIM52Q96A61 297 aa16.1■□□□□ 0.17
NEDD8-205ENST00000527046 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
NEDD8-205ENST00000527046 ESF1Q9H501 851 aaKnown RBP16.1■□□□□ 0.17
NEDD8-205ENST00000527046 EFCAB6Q5THR3 1501 aa16.09■□□□□ 0.17
NEDD8-205ENST00000527046 PLPPR3Q6T4P5 718 aa16.08■□□□□ 0.16
NEDD8-205ENST00000527046 NOS1P29475 1434 aa16.08■□□□□ 0.16
NEDD8-205ENST00000527046 PLA2R1Q13018 1463 aa16.07■□□□□ 0.16
NEDD8-205ENST00000527046 SPATA31D1Q6ZQQ2 1576 aa16.07■□□□□ 0.16
NEDD8-205ENST00000527046 SETD1BQ9UPS6 1966 aaKnown RBP16.06■□□□□ 0.16
NEDD8-205ENST00000527046 ERVK-7P63135 1459 aa16.06■□□□□ 0.16
NEDD8-205ENST00000527046 PREX1Q8TCU6 1659 aa16.05■□□□□ 0.16
NEDD8-205ENST00000527046 PKD2Q13563 968 aa16.05■□□□□ 0.16
NEDD8-205ENST00000527046 FOXD1Q16676 465 aa16.05■□□□□ 0.16
NEDD8-205ENST00000527046 SLC4A1APQ9BWU0 796 aaKnown RBP16.05■□□□□ 0.16
NEDD8-205ENST00000527046 RPRD2Q5VT52 1461 aaKnown RBP16.04■□□□□ 0.16
NEDD8-205ENST00000527046 PTPRTO14522 1441 aa16.04■□□□□ 0.16
NEDD8-205ENST00000527046 SYNMO15061 1565 aa16.04■□□□□ 0.16
NEDD8-205ENST00000527046 ACIN1Q9UKV3 1341 aaKnown RBP16.03■□□□□ 0.16
NEDD8-205ENST00000527046 TNRQ92752 1358 aa16.01■□□□□ 0.15
NEDD8-205ENST00000527046 IDI1Q13907 227 aa16■□□□□ 0.15
NEDD8-205ENST00000527046 LMTK3Q96Q04 1460 aa15.98■□□□□ 0.15
NEDD8-205ENST00000527046 UGGT1Q9NYU2 1555 aa15.98■□□□□ 0.15
NEDD8-205ENST00000527046 PIK3C2BO00750 1634 aa15.97■□□□□ 0.15
NEDD8-205ENST00000527046 DHX57Q6P158 1386 aaKnown RBP15.97■□□□□ 0.15
NEDD8-205ENST00000527046 MYO3AQ8NEV4 1616 aa15.97■□□□□ 0.15
NEDD8-205ENST00000527046 ANKRD30BQ9BXX2 1392 aa15.96■□□□□ 0.15
NEDD8-205ENST00000527046 SPHKAPQ2M3C7 1700 aa15.96■□□□□ 0.15
NEDD8-205ENST00000527046 SLC52A1Q9NWF4 448 aa15.94■□□□□ 0.14
NEDD8-205ENST00000527046 A2ML1A8K2U0 1454 aa15.94■□□□□ 0.14
NEDD8-205ENST00000527046 NLRP1Q9C000 1473 aa15.94■□□□□ 0.14
NEDD8-205ENST00000527046 TRPM2O94759 1503 aa15.94■□□□□ 0.14
NEDD8-205ENST00000527046 ZNF142P52746 1687 aaPredicted RBP15.93■□□□□ 0.14
NEDD8-205ENST00000527046 HSPA2P54652 639 aa15.93■□□□□ 0.14
NEDD8-205ENST00000527046 CLTCL1P53675 1640 aa15.93■□□□□ 0.14
NEDD8-205ENST00000527046 UHRF1BP1Q6BDS2 1440 aa15.93■□□□□ 0.14
NEDD8-205ENST00000527046 CEP170BQ9Y4F5 1589 aaPredicted RBP15.92■□□□□ 0.14
NEDD8-205ENST00000527046 UBR1Q8IWV7 1749 aa15.91■□□□□ 0.14
NEDD8-205ENST00000527046 TMEM131LA2VDJ0 1609 aa15.9■□□□□ 0.14
NEDD8-205ENST00000527046 MYO5BQ9ULV0 1848 aa15.89■□□□□ 0.13
NEDD8-205ENST00000527046 KDM5AP29375 1690 aaKnown RBP15.88■□□□□ 0.13
NEDD8-205ENST00000527046 SPATA31E1Q6ZUB1 1445 aa15.86■□□□□ 0.13
NEDD8-205ENST00000527046 ARHGAP23Q9P227 1491 aa15.86■□□□□ 0.13
NEDD8-205ENST00000527046 STRCQ7RTU9 1775 aa15.85■□□□□ 0.13
NEDD8-205ENST00000527046 ADGRB3O60242 1522 aa15.85■□□□□ 0.13
NEDD8-205ENST00000527046 LTKP29376 864 aa15.85■□□□□ 0.13
NEDD8-205ENST00000527046 THEMISQ8N1K5 641 aaPredicted RBP15.85■□□□□ 0.13
NEDD8-205ENST00000527046 SIN3AQ96ST3 1273 aa15.85■□□□□ 0.13
NEDD8-205ENST00000527046 SLIT1O75093 1534 aa15.84■□□□□ 0.13
NEDD8-205ENST00000527046 TMEM2Q9UHN6 1383 aa15.83■□□□□ 0.12
NEDD8-205ENST00000527046 ZFYVE9O95405 1425 aa15.83■□□□□ 0.12
NEDD8-205ENST00000527046 CCDC144AA2RUR9 1427 aa15.82■□□□□ 0.12
NEDD8-205ENST00000527046 KIF1BO60333 1816 aa15.82■□□□□ 0.12
NEDD8-205ENST00000527046 NEURL4Q96JN8 1562 aa15.81■□□□□ 0.12
NEDD8-205ENST00000527046 NCKAP5LQ9HCH0 1330 aa15.81■□□□□ 0.12
NEDD8-205ENST00000527046 CHGAP10645 457 aaKnown RBP15.8■□□□□ 0.12
NEDD8-205ENST00000527046 STAG3Q9UJ98 1225 aa15.78■□□□□ 0.12
NEDD8-205ENST00000527046 NEXMIFQ5QGS0 1516 aa15.78■□□□□ 0.12
NEDD8-205ENST00000527046 RIMS2Q9UQ26 1411 aa15.77■□□□□ 0.12
NEDD8-205ENST00000527046 RGL3Q3MIN7 710 aa15.77■□□□□ 0.12
NEDD8-205ENST00000527046 NUTM2DQ5VT03 806 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms