RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 NCOA2Q15596 1464 aa41.43■■■■■ 4.22
PVT1-219ENST00000523427 CCDC141Q6ZP82 1450 aa41.42■■■■■ 4.22
PVT1-219ENST00000523427 CAMSAP2Q08AD1 1489 aa41.41■■■■■ 4.22
PVT1-219ENST00000523427 WASHC2CQ9Y4E1 1318 aa41.4■■■■■ 4.22
PVT1-219ENST00000523427 TNRQ92752 1358 aa41.39■■■■■ 4.22
PVT1-219ENST00000523427 DNMT1P26358 1616 aaKnown RBP41.37■■■■■ 4.21
PVT1-219ENST00000523427 RSPH4AQ5TD94 716 aa41.35■■■■■ 4.21
PVT1-219ENST00000523427 TSPY4P0CV99 314 aa41.32■■■■■ 4.21
PVT1-219ENST00000523427 TSPY10P0CW01 314 aa41.32■■■■■ 4.21
PVT1-219ENST00000523427 SCAF1Q9H7N4 1312 aaKnown RBP41.31■■■■■ 4.2
PVT1-219ENST00000523427 KDM5DQ9BY66 1539 aa41.29■■■■■ 4.2
PVT1-219ENST00000523427 PZPP20742 1482 aa41.28■■■■■ 4.2
PVT1-219ENST00000523427 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.25■■■■■ 4.19
PVT1-219ENST00000523427 PIP4K2BP78356 416 aa41.24■■■■■ 4.19
PVT1-219ENST00000523427 ANKLE2Q86XL3 938 aa41.23■■■■■ 4.19
PVT1-219ENST00000523427 THEMISQ8N1K5 641 aaPredicted RBP41.2■■■■■ 4.19
PVT1-219ENST00000523427 MIA2Q96PC5 1412 aa41.19■■■■■ 4.18
PVT1-219ENST00000523427 NEURL4Q96JN8 1562 aa41.17■■■■■ 4.18
PVT1-219ENST00000523427 POLR1AO95602 1720 aaPredicted RBP41.16■■■■■ 4.18
PVT1-219ENST00000523427 LOC105371045A0A1W2PR82 267 aa41.16■■■■■ 4.18
PVT1-219ENST00000523427 ARHGEF5Q12774 1597 aa41.16■■■■■ 4.18
PVT1-219ENST00000523427 FAM135AQ9P2D6 1515 aa41.14■■■■■ 4.18
PVT1-219ENST00000523427 SHANK2Q9UPX8 1470 aa41.14■■■■■ 4.18
PVT1-219ENST00000523427 TOM1O60784 492 aa41.12■■■■■ 4.17
PVT1-219ENST00000523427 HSPA1LP34931 641 aa41.12■■■■■ 4.17
PVT1-219ENST00000523427 LRRC9Q6ZRR7 1453 aa41.1■■■■■ 4.17
PVT1-219ENST00000523427 UGGT1Q9NYU2 1555 aa41.1■■■■■ 4.17
PVT1-219ENST00000523427 NLRP1Q9C000 1473 aa41.09■■■■■ 4.17
PVT1-219ENST00000523427 CPS1P31327 1500 aa41.08■■■■■ 4.17
PVT1-219ENST00000523427 KANK4Q5T7N3 995 aaPredicted RBP41.08■■■■■ 4.17
PVT1-219ENST00000523427 VPS8Q8N3P4 1428 aa41.07■■■■■ 4.16
PVT1-219ENST00000523427 NPHP4O75161 1426 aaPredicted RBP41.06■■■■■ 4.16
PVT1-219ENST00000523427 ABCC3O15438 1527 aa41■■■■■ 4.15
PVT1-219ENST00000523427 VWDEQ8N2E2 1590 aa40.98■■■■■ 4.15
PVT1-219ENST00000523427 SENP3Q9H4L4 574 aaPredicted RBP40.96■■■■■ 4.15
PVT1-219ENST00000523427 RNF17Q9BXT8 1623 aaKnown RBP40.95■■■■■ 4.15
PVT1-219ENST00000523427 MAST1Q9Y2H9 1570 aa40.95■■■■■ 4.15
PVT1-219ENST00000523427 MED14O60244 1454 aa40.94■■■■■ 4.14
PVT1-219ENST00000523427 ERVK-7P63135 1459 aa40.91■■■■■ 4.14
PVT1-219ENST00000523427 DEPDC5O75140 1603 aa40.91■■■■■ 4.14
PVT1-219ENST00000523427 MYOM3Q5VTT5 1437 aa40.91■■■■■ 4.14
PVT1-219ENST00000523427 CFAP65Q6ZU64 1925 aaKnown RBP40.87■■■■■ 4.13
PVT1-219ENST00000523427 IQGAP1P46940 1657 aa40.87■■■■■ 4.13
PVT1-219ENST00000523427 ZC3H13Q5T200 1668 aaKnown RBP40.87■■■■■ 4.13
PVT1-219ENST00000523427 EIF2AK4Q9P2K8 1649 aaKnown RBP40.85■■■■■ 4.13
PVT1-219ENST00000523427 MROH1Q8NDA8 1641 aa40.83■■■■■ 4.13
PVT1-219ENST00000523427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.83■■■■■ 4.132e-6■■□□□ 12.5
PVT1-219ENST00000523427 RRP7BPQ9NSQ0 103 aa40.83■■■■■ 4.13
PVT1-219ENST00000523427 CEP152O94986 1710 aa40.83■■■■■ 4.13
PVT1-219ENST00000523427 MED1Q15648 1581 aaPredicted RBP40.82■■■■■ 4.12
PVT1-219ENST00000523427 MAP3K1Q13233 1512 aa40.79■■■■■ 4.12
PVT1-219ENST00000523427 DUOX2Q9NRD8 1548 aa40.79■■■■■ 4.12
PVT1-219ENST00000523427 KIF15Q9NS87 1388 aa40.78■■■■■ 4.12
PVT1-219ENST00000523427 TXNDC2Q86VQ3 553 aa40.76■■■■■ 4.12
PVT1-219ENST00000523427 LRRC7Q96NW7 1537 aa40.76■■■■■ 4.12
PVT1-219ENST00000523427 ALKQ9UM73 1620 aa40.75■■■■■ 4.11
PVT1-219ENST00000523427 STRCP1A6NGW2 1772 aa40.74■■■■■ 4.11
PVT1-219ENST00000523427 LTKP29376 864 aa40.74■■■■■ 4.11
PVT1-219ENST00000523427 APLP2Q06481 763 aa40.74■■■■■ 4.11
PVT1-219ENST00000523427 PHF23Q9BUL5 403 aaPredicted RBP40.73■■■■■ 4.11
PVT1-219ENST00000523427 SCAF11Q99590 1463 aaKnown RBP40.71■■■■■ 4.11
PVT1-219ENST00000523427 ABCC5O15440 1437 aa40.71■■■■■ 4.11
PVT1-219ENST00000523427 UBR1Q8IWV7 1749 aa40.7■■■■■ 4.11
PVT1-219ENST00000523427 STAG3Q9UJ98 1225 aa40.67■■■■■ 4.1
PVT1-219ENST00000523427 CHIC2Q9UKJ5 165 aa40.66■■■■■ 4.1
PVT1-219ENST00000523427 EID1Q9Y6B2 187 aa40.66■■■■■ 4.1
PVT1-219ENST00000523427 ERBINQ96RT1 1412 aa40.63■■■■■ 4.09
PVT1-219ENST00000523427 PTPN23Q9H3S7 1636 aa40.62■■■■■ 4.09
PVT1-219ENST00000523427 ARHGAP31Q2M1Z3 1444 aa40.61■■■■■ 4.09
PVT1-219ENST00000523427 PRDM15P57071 1507 aaPredicted RBP40.61■■■■■ 4.09
PVT1-219ENST00000523427 KANK1Q14678 1352 aa40.61■■■■■ 4.09
PVT1-219ENST00000523427 SYNMO15061 1565 aa40.59■■■■■ 4.09
PVT1-219ENST00000523427 DAPK1P53355 1430 aa40.59■■■■■ 4.09
PVT1-219ENST00000523427 ARHGAP23Q9P227 1491 aa40.58■■■■■ 4.09
PVT1-219ENST00000523427 SLIT1O75093 1534 aa40.57■■■■■ 4.08
PVT1-219ENST00000523427 CROCC2H7BZ55 1655 aa40.56■■■■■ 4.08
PVT1-219ENST00000523427 PIK3C2BO00750 1634 aa40.53■■■■■ 4.08
PVT1-219ENST00000523427 TMEM2Q9UHN6 1383 aa40.51■■■■■ 4.08
PVT1-219ENST00000523427 IDI1Q13907 227 aa40.51■■■■■ 4.08
PVT1-219ENST00000523427 FGD6Q6ZV73 1430 aa40.5■■■■■ 4.07
PVT1-219ENST00000523427 ANKRD30AQ9BXX3 1397 aa40.49■■■■■ 4.07
PVT1-219ENST00000523427 SLC26A8Q96RN1 970 aa40.44■■■■■ 4.06
PVT1-219ENST00000523427 RBM33Q96EV2 1170 aaKnown RBP40.42■■■■■ 4.06
PVT1-219ENST00000523427 EFCAB6Q5THR3 1501 aa40.41■■■■■ 4.06
PVT1-219ENST00000523427 BCANQ96GW7 911 aa40.4■■■■■ 4.06
PVT1-219ENST00000523427 TMEM94Q12767 1356 aa40.37■■■■■ 4.05
PVT1-219ENST00000523427 XIRP1Q702N8 1843 aaKnown RBP40.37■■■■■ 4.05
PVT1-219ENST00000523427 FAM50AQ14320 339 aaKnown RBP40.36■■■■■ 4.05
PVT1-219ENST00000523427 PROSER2Q86WR7 435 aaPredicted RBP40.36■■■■■ 4.05
PVT1-219ENST00000523427 KCNA6P17658 529 aa40.35■■■■■ 4.05
PVT1-219ENST00000523427 LMTK2Q8IWU2 1503 aa40.34■■■■■ 4.05
PVT1-219ENST00000523427 NOS1P29475 1434 aa40.28■■■■■ 4.04
PVT1-219ENST00000523427 RGS17Q9UGC6 210 aaPredicted RBP40.27■■■■■ 4.04
PVT1-219ENST00000523427 FAM135BQ49AJ0 1406 aa40.25■■■■■ 4.03
PVT1-219ENST00000523427 SLC52A1Q9NWF4 448 aa40.25■■■■■ 4.03
PVT1-219ENST00000523427 KDM5AP29375 1690 aaKnown RBP40.23■■■■■ 4.03
PVT1-219ENST00000523427 ADGRB3O60242 1522 aa40.22■■■■■ 4.03
PVT1-219ENST00000523427 TET3O43151 1660 aa40.22■■■■■ 4.03
PVT1-219ENST00000523427 ANKRD50Q9ULJ7 1429 aa40.18■■■■■ 4.02
PVT1-219ENST00000523427 ADGRL2O95490 1459 aa40.18■■■■■ 4.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms