RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, humanhuman

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-215ENST00000522963 PCGF6Q9BYE7 350 aa17.96■□□□□ 0.47
PVT1-215ENST00000522963 DUOX2Q9NRD8 1548 aa17.96■□□□□ 0.47
PVT1-215ENST00000522963 NCOA1Q15788 1441 aa17.96■□□□□ 0.47
PVT1-215ENST00000522963 CNTLNQ9NXG0 1405 aa17.95■□□□□ 0.46
PVT1-215ENST00000522963 C3P01024 1663 aa17.94■□□□□ 0.46
PVT1-215ENST00000522963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.92■□□□□ 0.466e-6■□□□□ 11
PVT1-215ENST00000522963 WASHC2CQ9Y4E1 1318 aa17.92■□□□□ 0.46
PVT1-215ENST00000522963 ZMYM3Q14202 1370 aa17.91■□□□□ 0.46
PVT1-215ENST00000522963 PPP6R1Q9UPN7 881 aa17.91■□□□□ 0.46
PVT1-215ENST00000522963 EIF2AK4Q9P2K8 1649 aaKnown RBP17.9■□□□□ 0.46
PVT1-215ENST00000522963 MROH2AA6NES4 1674 aa17.9■□□□□ 0.46
PVT1-215ENST00000522963 HFM1A2PYH4 1435 aa17.89■□□□□ 0.46
PVT1-215ENST00000522963 NAIPQ13075 1403 aa17.89■□□□□ 0.46
PVT1-215ENST00000522963 ERBINQ96RT1 1412 aa17.89■□□□□ 0.45
PVT1-215ENST00000522963 SETD1BQ9UPS6 1966 aaKnown RBP17.88■□□□□ 0.45
PVT1-215ENST00000522963 RNF17Q9BXT8 1623 aaKnown RBP17.87■□□□□ 0.45
PVT1-215ENST00000522963 KDM5DQ9BY66 1539 aa17.87■□□□□ 0.45
PVT1-215ENST00000522963 HSPA2P54652 639 aa17.86■□□□□ 0.45
PVT1-215ENST00000522963 SETD5Q9C0A6 1442 aa17.85■□□□□ 0.45
PVT1-215ENST00000522963 CFAP65Q6ZU64 1925 aaKnown RBP17.84■□□□□ 0.45
PVT1-215ENST00000522963 CEP152O94986 1710 aa17.84■□□□□ 0.45
PVT1-215ENST00000522963 PREX1Q8TCU6 1659 aa17.84■□□□□ 0.45
PVT1-215ENST00000522963 LMTK3Q96Q04 1460 aa17.84■□□□□ 0.45
PVT1-215ENST00000522963 ANKRD50Q9ULJ7 1429 aa17.84■□□□□ 0.45
PVT1-215ENST00000522963 FBXO31Q5XUX0 539 aaPredicted RBP17.83■□□□□ 0.44
PVT1-215ENST00000522963 MROH1Q8NDA8 1641 aa17.83■□□□□ 0.44
PVT1-215ENST00000522963 UHRF1BP1Q6BDS2 1440 aa17.82■□□□□ 0.44
PVT1-215ENST00000522963 KANK1Q14678 1352 aa17.82■□□□□ 0.44
PVT1-215ENST00000522963 ABCC3O15438 1527 aa17.82■□□□□ 0.44
PVT1-215ENST00000522963 RAB3GAP2Q9H2M9 1393 aa17.8■□□□□ 0.44
PVT1-215ENST00000522963 FAM135AQ9P2D6 1515 aa17.8■□□□□ 0.44
PVT1-215ENST00000522963 ZC3H13Q5T200 1668 aaKnown RBP17.8■□□□□ 0.44
PVT1-215ENST00000522963 GCC2Q8IWJ2 1684 aa17.8■□□□□ 0.44
PVT1-215ENST00000522963 NPATQ14207 1427 aa17.79■□□□□ 0.44
PVT1-215ENST00000522963 PRDM15P57071 1507 aaPredicted RBP17.78■□□□□ 0.44
PVT1-215ENST00000522963 PZPP20742 1482 aa17.77■□□□□ 0.44
PVT1-215ENST00000522963 DEPDC5O75140 1603 aa17.77■□□□□ 0.44
PVT1-215ENST00000522963 CAMSAP1Q5T5Y3 1602 aa17.77■□□□□ 0.44
PVT1-215ENST00000522963 TNRQ92752 1358 aa17.76■□□□□ 0.43
PVT1-215ENST00000522963 HRCP23327 699 aa17.75■□□□□ 0.43
PVT1-215ENST00000522963 MYO3AQ8NEV4 1616 aa17.74■□□□□ 0.43
PVT1-215ENST00000522963 TRIM52Q96A61 297 aa17.7■□□□□ 0.42
PVT1-215ENST00000522963 VWDEQ8N2E2 1590 aa17.7■□□□□ 0.42
PVT1-215ENST00000522963 CEP170BQ9Y4F5 1589 aaPredicted RBP17.7■□□□□ 0.42
PVT1-215ENST00000522963 ERVK-7P63135 1459 aa17.69■□□□□ 0.42
PVT1-215ENST00000522963 NUP155O75694 1391 aa17.69■□□□□ 0.42
PVT1-215ENST00000522963 UNC13BO14795 1591 aa17.69■□□□□ 0.42
PVT1-215ENST00000522963 LMTK2Q8IWU2 1503 aa17.67■□□□□ 0.42
PVT1-215ENST00000522963 A2ML1A8K2U0 1454 aa17.67■□□□□ 0.42
PVT1-215ENST00000522963 ZNF142P52746 1687 aaPredicted RBP17.67■□□□□ 0.42
PVT1-215ENST00000522963 ACIN1Q9UKV3 1341 aaKnown RBP17.67■□□□□ 0.42
PVT1-215ENST00000522963 SPATA31D1Q6ZQQ2 1576 aa17.66■□□□□ 0.42
PVT1-215ENST00000522963 ARHGAP31Q2M1Z3 1444 aa17.66■□□□□ 0.42
PVT1-215ENST00000522963 EFCAB6Q5THR3 1501 aa17.65■□□□□ 0.42
PVT1-215ENST00000522963 TET3O43151 1660 aa17.64■□□□□ 0.42
PVT1-215ENST00000522963 STRCQ7RTU9 1775 aa17.63■□□□□ 0.41
PVT1-215ENST00000522963 NLRP1Q9C000 1473 aa17.63■□□□□ 0.41
PVT1-215ENST00000522963 IQGAP3Q86VI3 1631 aa17.63■□□□□ 0.41
PVT1-215ENST00000522963 NCKAP5LQ9HCH0 1330 aa17.63■□□□□ 0.41
PVT1-215ENST00000522963 STAG3Q9UJ98 1225 aa17.62■□□□□ 0.41
PVT1-215ENST00000522963 UGGT1Q9NYU2 1555 aa17.62■□□□□ 0.41
PVT1-215ENST00000522963 THEMISQ8N1K5 641 aaPredicted RBP17.61■□□□□ 0.41
PVT1-215ENST00000522963 MPHOSPH9Q99550 1183 aa17.61■□□□□ 0.41
PVT1-215ENST00000522963 SLC4A1APQ9BWU0 796 aaKnown RBP17.6■□□□□ 0.41
PVT1-215ENST00000522963 E9PCH4 1651 aa17.59■□□□□ 0.41
PVT1-215ENST00000522963 DMRT2Q9Y5R5 561 aa17.59■□□□□ 0.41
PVT1-215ENST00000522963 DHX57Q6P158 1386 aaKnown RBP17.58■□□□□ 0.4
PVT1-215ENST00000522963 IDI1Q13907 227 aa17.58■□□□□ 0.4
PVT1-215ENST00000522963 SYNMO15061 1565 aa17.57■□□□□ 0.4
PVT1-215ENST00000522963 RPRD2Q5VT52 1461 aaKnown RBP17.57■□□□□ 0.4
PVT1-215ENST00000522963 NOS1P29475 1434 aa17.56■□□□□ 0.4
PVT1-215ENST00000522963 CHGAP10645 457 aaKnown RBP17.56■□□□□ 0.4
PVT1-215ENST00000522963 PKD2Q13563 968 aa17.56■□□□□ 0.4
PVT1-215ENST00000522963 PIK3C2BO00750 1634 aa17.56■□□□□ 0.4
PVT1-215ENST00000522963 PLA2R1Q13018 1463 aa17.56■□□□□ 0.4
PVT1-215ENST00000522963 ANKLE2Q86XL3 938 aa17.55■□□□□ 0.4
PVT1-215ENST00000522963 UBR1Q8IWV7 1749 aa17.55■□□□□ 0.4
PVT1-215ENST00000522963 FOXD1Q16676 465 aa17.54■□□□□ 0.4
PVT1-215ENST00000522963 SLC52A1Q9NWF4 448 aa17.53■□□□□ 0.4
PVT1-215ENST00000522963 POLR1AO95602 1720 aaPredicted RBP17.52■□□□□ 0.39
PVT1-215ENST00000522963 PTPRTO14522 1441 aa17.51■□□□□ 0.39
PVT1-215ENST00000522963 MYO5BQ9ULV0 1848 aa17.49■□□□□ 0.39
PVT1-215ENST00000522963 TXNDC2Q86VQ3 553 aa17.49■□□□□ 0.39
PVT1-215ENST00000522963 SPHKAPQ2M3C7 1700 aa17.49■□□□□ 0.39
PVT1-215ENST00000522963 SENP3Q9H4L4 574 aaPredicted RBP17.48■□□□□ 0.39
PVT1-215ENST00000522963 EID1Q9Y6B2 187 aa17.48■□□□□ 0.39
PVT1-215ENST00000522963 ADGRB3O60242 1522 aa17.47■□□□□ 0.39
PVT1-215ENST00000522963 CCER1Q8TC90 406 aaPredicted RBP17.47■□□□□ 0.39
PVT1-215ENST00000522963 NEURL4Q96JN8 1562 aa17.46■□□□□ 0.39
PVT1-215ENST00000522963 LTKP29376 864 aa17.46■□□□□ 0.39
PVT1-215ENST00000522963 NPHP4O75161 1426 aaPredicted RBP17.46■□□□□ 0.39
PVT1-215ENST00000522963 ANKRD30BQ9BXX2 1392 aa17.45■□□□□ 0.38
PVT1-215ENST00000522963 TMEM2Q9UHN6 1383 aa17.45■□□□□ 0.38
PVT1-215ENST00000522963 BCANQ96GW7 911 aa17.45■□□□□ 0.38
PVT1-215ENST00000522963 SCAF11Q99590 1463 aaKnown RBP17.44■□□□□ 0.38
PVT1-215ENST00000522963 ILDR1Q86SU0 546 aaPredicted RBP17.44■□□□□ 0.38
PVT1-215ENST00000522963 ZNF335Q9H4Z2 1342 aaPredicted RBP17.44■□□□□ 0.38
PVT1-215ENST00000522963 SLIT1O75093 1534 aa17.43■□□□□ 0.38
PVT1-215ENST00000522963 KDM5AP29375 1690 aaKnown RBP17.43■□□□□ 0.38
PVT1-215ENST00000522963 PPP1R15AO75807 674 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms