RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 INO80Q9ULG1 1556 aaPredicted RBP13.18□□□□□ -0.3
PDGFRB-210ENST00000522466 CFDP1Q9UEE9 299 aaPredicted RBP13.17□□□□□ -0.3
PDGFRB-210ENST00000522466 CPS1P31327 1500 aa13.17□□□□□ -0.3
PDGFRB-210ENST00000522466 TNRQ92752 1358 aa13.15□□□□□ -0.3
PDGFRB-210ENST00000522466 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.15□□□□□ -0.3
PDGFRB-210ENST00000522466 ADGBQ8N7X0 1667 aa13.15□□□□□ -0.31
PDGFRB-210ENST00000522466 ALKQ9UM73 1620 aa13.14□□□□□ -0.31
PDGFRB-210ENST00000522466 ZNF644Q9H582 1327 aaPredicted RBP13.13□□□□□ -0.31
PDGFRB-210ENST00000522466 VWDEQ8N2E2 1590 aa13.13□□□□□ -0.31
PDGFRB-210ENST00000522466 CCNB3Q8WWL7 1395 aa13.13□□□□□ -0.31
PDGFRB-210ENST00000522466 ANKLE2Q86XL3 938 aa13.12□□□□□ -0.31
PDGFRB-210ENST00000522466 KIAA1107Q9UPP5 1409 aa13.12□□□□□ -0.31
PDGFRB-210ENST00000522466 PLEKHH2Q8IVE3 1493 aa13.11□□□□□ -0.31
PDGFRB-210ENST00000522466 KIF3BO15066 747 aa13.11□□□□□ -0.31
PDGFRB-210ENST00000522466 STRCP1A6NGW2 1772 aa13.11□□□□□ -0.31
PDGFRB-210ENST00000522466 NPHP4O75161 1426 aaPredicted RBP13.1□□□□□ -0.31
PDGFRB-210ENST00000522466 FYCO1Q9BQS8 1478 aa13.1□□□□□ -0.31
PDGFRB-210ENST00000522466 THEMISQ8N1K5 641 aaPredicted RBP13.08□□□□□ -0.32
PDGFRB-210ENST00000522466 RGS17Q9UGC6 210 aaPredicted RBP13.08□□□□□ -0.32
PDGFRB-210ENST00000522466 PZPP20742 1482 aa13.07□□□□□ -0.32
PDGFRB-210ENST00000522466 WASHC2CQ9Y4E1 1318 aa13.07□□□□□ -0.32
PDGFRB-210ENST00000522466 UGGT1Q9NYU2 1555 aa13.07□□□□□ -0.32
PDGFRB-210ENST00000522466 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
PDGFRB-210ENST00000522466 IQGAP1P46940 1657 aa13.06□□□□□ -0.32
PDGFRB-210ENST00000522466 LRRC7Q96NW7 1537 aa13.06□□□□□ -0.32
PDGFRB-210ENST00000522466 MTUS2Q5JR59 1369 aa13.06□□□□□ -0.32
PDGFRB-210ENST00000522466 CFAP65Q6ZU64 1925 aaKnown RBP13.05□□□□□ -0.32
PDGFRB-210ENST00000522466 KDM5DQ9BY66 1539 aa13.05□□□□□ -0.32
PDGFRB-210ENST00000522466 MIA2Q96PC5 1412 aa13.05□□□□□ -0.32
PDGFRB-210ENST00000522466 MBD5Q9P267 1494 aa13.04□□□□□ -0.32
PDGFRB-210ENST00000522466 FAM135AQ9P2D6 1515 aa13.04□□□□□ -0.32
PDGFRB-210ENST00000522466 TIAM1Q13009 1591 aa13.04□□□□□ -0.32
PDGFRB-210ENST00000522466 DEPDC5O75140 1603 aa13.04□□□□□ -0.32
PDGFRB-210ENST00000522466 RNF17Q9BXT8 1623 aaKnown RBP13.04□□□□□ -0.32
PDGFRB-210ENST00000522466 MED14O60244 1454 aa13.03□□□□□ -0.32
PDGFRB-210ENST00000522466 NLRP1Q9C000 1473 aa13.02□□□□□ -0.33
PDGFRB-210ENST00000522466 POTEAQ6S8J7 498 aa13.01□□□□□ -0.33
PDGFRB-210ENST00000522466 RTEL1-TNFRSF6BF6WH68 1400 aa13.01□□□□□ -0.33
PDGFRB-210ENST00000522466 SYNMO15061 1565 aa13□□□□□ -0.33
PDGFRB-210ENST00000522466 XIRP1Q702N8 1843 aaKnown RBP12.99□□□□□ -0.33
PDGFRB-210ENST00000522466 SETD1AO15047 1707 aaKnown RBP12.99□□□□□ -0.33
PDGFRB-210ENST00000522466 ZC3H13Q5T200 1668 aaKnown RBP12.98□□□□□ -0.33
PDGFRB-210ENST00000522466 CCDC141Q6ZP82 1450 aa12.97□□□□□ -0.33
PDGFRB-210ENST00000522466 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.34
PDGFRB-210ENST00000522466 EHBP1L1Q8N3D4 1523 aa12.95□□□□□ -0.34
PDGFRB-210ENST00000522466 CEP152O94986 1710 aa12.94□□□□□ -0.34
PDGFRB-210ENST00000522466 UBR1Q8IWV7 1749 aa12.94□□□□□ -0.34
PDGFRB-210ENST00000522466 LTKP29376 864 aa12.94□□□□□ -0.34
PDGFRB-210ENST00000522466 TXNDC2Q86VQ3 553 aa12.94□□□□□ -0.34
PDGFRB-210ENST00000522466 RBM33Q96EV2 1170 aaKnown RBP12.94□□□□□ -0.34
PDGFRB-210ENST00000522466 ABCC3O15438 1527 aa12.93□□□□□ -0.34
PDGFRB-210ENST00000522466 ERVK-7P63135 1459 aa12.93□□□□□ -0.34
PDGFRB-210ENST00000522466 SCAF11Q99590 1463 aaKnown RBP12.92□□□□□ -0.34
PDGFRB-210ENST00000522466 CEP162Q5TB80 1403 aa12.92□□□□□ -0.34
PDGFRB-210ENST00000522466 TSPY4P0CV99 314 aa12.91□□□□□ -0.34
PDGFRB-210ENST00000522466 TSPY10P0CW01 314 aa12.91□□□□□ -0.34
PDGFRB-210ENST00000522466 NCOA2Q15596 1464 aa12.91□□□□□ -0.34
PDGFRB-210ENST00000522466 ROBO1Q9Y6N7 1651 aa12.9□□□□□ -0.34
PDGFRB-210ENST00000522466 FAM135BQ49AJ0 1406 aa12.88□□□□□ -0.35
PDGFRB-210ENST00000522466 RSPH4AQ5TD94 716 aa12.88□□□□□ -0.35
PDGFRB-210ENST00000522466 TMEM94Q12767 1356 aa12.88□□□□□ -0.35
PDGFRB-210ENST00000522466 ARHGEF5Q12774 1597 aa12.87□□□□□ -0.35
PDGFRB-210ENST00000522466 PROSER2Q86WR7 435 aaPredicted RBP12.87□□□□□ -0.35
PDGFRB-210ENST00000522466 EID1Q9Y6B2 187 aa12.87□□□□□ -0.35
PDGFRB-210ENST00000522466 MROH1Q8NDA8 1641 aa12.87□□□□□ -0.35
PDGFRB-210ENST00000522466 ARHGAP23Q9P227 1491 aa12.86□□□□□ -0.35
PDGFRB-210ENST00000522466 SLIT1O75093 1534 aa12.85□□□□□ -0.35
PDGFRB-210ENST00000522466 SLC26A8Q96RN1 970 aa12.85□□□□□ -0.35
PDGFRB-210ENST00000522466 STAG3Q9UJ98 1225 aa12.85□□□□□ -0.35
PDGFRB-210ENST00000522466 PHLPP1O60346 1717 aa12.85□□□□□ -0.35
PDGFRB-210ENST00000522466 PIK3C2BO00750 1634 aa12.84□□□□□ -0.35
PDGFRB-210ENST00000522466 TRIM52Q96A61 297 aa12.84□□□□□ -0.35
PDGFRB-210ENST00000522466 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.84□□□□□ -0.35
PDGFRB-210ENST00000522466 EIF2AK4Q9P2K8 1649 aaKnown RBP12.83□□□□□ -0.36
PDGFRB-210ENST00000522466 MAP3K1Q13233 1512 aa12.83□□□□□ -0.36
PDGFRB-210ENST00000522466 KCNA6P17658 529 aa12.82□□□□□ -0.36
PDGFRB-210ENST00000522466 BCANQ96GW7 911 aa12.82□□□□□ -0.36
PDGFRB-210ENST00000522466 TMEM2Q9UHN6 1383 aa12.81□□□□□ -0.36
PDGFRB-210ENST00000522466 MAPK8IP2Q13387 824 aaPredicted RBP12.81□□□□□ -0.36
PDGFRB-210ENST00000522466 UPF1Q92900 1129 aaKnown RBP eCLIP12.81□□□□□ -0.36
PDGFRB-210ENST00000522466 MAST1Q9Y2H9 1570 aa12.81□□□□□ -0.36
PDGFRB-210ENST00000522466 MEX3CQ5U5Q3 659 aaKnown RBP12.8□□□□□ -0.36
PDGFRB-210ENST00000522466 JCADQ9P266 1359 aa12.79□□□□□ -0.36
PDGFRB-210ENST00000522466 SLAIN2Q9P270 581 aa12.78□□□□□ -0.36
PDGFRB-210ENST00000522466 MSH6P52701 1360 aa12.78□□□□□ -0.36
PDGFRB-210ENST00000522466 LRRC9Q6ZRR7 1453 aa12.78□□□□□ -0.36
PDGFRB-210ENST00000522466 LRP6O75581 1613 aa12.77□□□□□ -0.36
PDGFRB-210ENST00000522466 IDI1Q13907 227 aa12.77□□□□□ -0.37
PDGFRB-210ENST00000522466 RRP7BPQ9NSQ0 103 aa12.77□□□□□ -0.37
PDGFRB-210ENST00000522466 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.37
PDGFRB-210ENST00000522466 EFCAB6Q5THR3 1501 aa12.77□□□□□ -0.37
PDGFRB-210ENST00000522466 DUOX2Q9NRD8 1548 aa12.77□□□□□ -0.37
PDGFRB-210ENST00000522466 TET3O43151 1660 aa12.76□□□□□ -0.37
PDGFRB-210ENST00000522466 COL16A1Q07092 1604 aaPredicted RBP12.75□□□□□ -0.37
PDGFRB-210ENST00000522466 ARHGAP31Q2M1Z3 1444 aa12.75□□□□□ -0.37
PDGFRB-210ENST00000522466 KIF15Q9NS87 1388 aa12.75□□□□□ -0.37
PDGFRB-210ENST00000522466 NWD1Q149M9 1564 aa12.73□□□□□ -0.37
PDGFRB-210ENST00000522466 NUTM2BA6NNL0 878 aaPredicted RBP12.73□□□□□ -0.37
PDGFRB-210ENST00000522466 NUTM2EB1AL46 878 aaPredicted RBP12.73□□□□□ -0.37
PDGFRB-210ENST00000522466 KANK4Q5T7N3 995 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms