RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RSPH6AQ9H0K4 717 aa14.19□□□□□ -0.14
LSM1-202ENST00000520286 PCDHGA4Q9Y5G9 962 aa14.19□□□□□ -0.14
LSM1-202ENST00000520286 TYW1BQ6NUM6 668 aa14.18□□□□□ -0.14
LSM1-202ENST00000520286 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.18□□□□□ -0.14
LSM1-202ENST00000520286 TSR1Q2NL82 804 aaKnown RBP14.17□□□□□ -0.14
LSM1-202ENST00000520286 POTEIP0CG38 1075 aa14.15□□□□□ -0.14
LSM1-202ENST00000520286 CLCN1P35523 988 aa14.15□□□□□ -0.14
LSM1-202ENST00000520286 FBXW7Q969H0 707 aa14.14□□□□□ -0.15
LSM1-202ENST00000520286 TMUB1Q9BVT8 246 aa14.14□□□□□ -0.15
LSM1-202ENST00000520286 JPH4Q96JJ6 628 aa14.13□□□□□ -0.15
LSM1-202ENST00000520286 GPCPD1Q9NPB8 672 aa14.13□□□□□ -0.15
LSM1-202ENST00000520286 MDM2Q00987 491 aaPredicted RBP14.12□□□□□ -0.15
LSM1-202ENST00000520286 PCMTD1Q96MG8 357 aaPredicted RBP14.12□□□□□ -0.15
LSM1-202ENST00000520286 FLIIQ13045 1269 aa14.11□□□□□ -0.15
LSM1-202ENST00000520286 PHOX2BQ99453 314 aa14.11□□□□□ -0.15
LSM1-202ENST00000520286 KDM4FA0A1W2PPD8 638 aa14.09□□□□□ -0.15
LSM1-202ENST00000520286 SSTR3P32745 418 aaPredicted RBP14.06□□□□□ -0.16
LSM1-202ENST00000520286 FOSBP53539 338 aa14.06□□□□□ -0.16
LSM1-202ENST00000520286 SH3D19Q5HYK7 790 aa14.06□□□□□ -0.16
LSM1-202ENST00000520286 CERKQ8TCT0 537 aa14.06□□□□□ -0.16
LSM1-202ENST00000520286 OATP04181 439 aa14.05□□□□□ -0.16
LSM1-202ENST00000520286 FAM161AQ3B820 660 aa14.05□□□□□ -0.16
LSM1-202ENST00000520286 METTL3Q86U44 580 aaKnown RBP14.04□□□□□ -0.16
LSM1-202ENST00000520286 C6orf132Q5T0Z8 1188 aa14.03□□□□□ -0.16
LSM1-202ENST00000520286 PADI6Q6TGC4 694 aa14.03□□□□□ -0.16
LSM1-202ENST00000520286 ZDHHC16Q969W1 377 aa14.03□□□□□ -0.16
LSM1-202ENST00000520286 ONECUT3O60422 494 aaPredicted RBP14.02□□□□□ -0.17
LSM1-202ENST00000520286 ZNF454Q8N9F8 522 aa14.02□□□□□ -0.17
LSM1-202ENST00000520286 BEGAINQ9BUH8 593 aa14.01□□□□□ -0.17
LSM1-202ENST00000520286 SKIV2LQ15477 1246 aaKnown RBP14□□□□□ -0.17
LSM1-202ENST00000520286 FAM217BQ9NTX9 383 aaPredicted RBP14□□□□□ -0.17
LSM1-202ENST00000520286 ADGRG1Q9Y653 693 aa14□□□□□ -0.17
LSM1-202ENST00000520286 PXYLP1Q8TE99 480 aa13.99□□□□□ -0.17
LSM1-202ENST00000520286 NLRP7Q8WX94 980 aa13.99□□□□□ -0.17
LSM1-202ENST00000520286 POTEHQ6S545 545 aa13.98□□□□□ -0.17
LSM1-202ENST00000520286 RBM27Q9P2N5 1060 aaKnown RBP13.98□□□□□ -0.17
LSM1-202ENST00000520286 NUDT7P0C024 238 aa13.97□□□□□ -0.17
LSM1-202ENST00000520286 TTC13Q8NBP0 860 aa13.96□□□□□ -0.17
LSM1-202ENST00000520286 DOK7Q18PE1 504 aa13.95□□□□□ -0.18
LSM1-202ENST00000520286 KHSRPQ92945 711 aaKnown RBP eCLIP13.95□□□□□ -0.18
LSM1-202ENST00000520286 ADAM33Q9BZ11 813 aa13.95□□□□□ -0.18
LSM1-202ENST00000520286 ATP1B4Q9UN42 357 aaPredicted RBP13.95□□□□□ -0.18
LSM1-202ENST00000520286 ARSIQ5FYB1 569 aa13.94□□□□□ -0.18
LSM1-202ENST00000520286 C1orf115Q9H7X2 142 aa13.93□□□□□ -0.18
LSM1-202ENST00000520286 UBTFP17480 764 aaKnown RBP13.92□□□□□ -0.18
LSM1-202ENST00000520286 PRSS12P56730 875 aa13.92□□□□□ -0.18
LSM1-202ENST00000520286 ARID3AQ99856 593 aa13.92□□□□□ -0.18
LSM1-202ENST00000520286 PROCA1Q8NCQ7 364 aaPredicted RBP13.91□□□□□ -0.18
LSM1-202ENST00000520286 SP7Q8TDD2 431 aaPredicted RBP13.91□□□□□ -0.18
LSM1-202ENST00000520286 POLR3EQ9NVU0 708 aa13.91□□□□□ -0.18
LSM1-202ENST00000520286 A6NJR5 290 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 ARID3CA6NKF2 412 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 RIMBP2O15034 1052 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 HOXB3P14651 431 aaPredicted RBP13.9□□□□□ -0.18
LSM1-202ENST00000520286 MCM6Q14566 821 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 RBM46Q8TBY0 533 aaKnown RBP13.9□□□□□ -0.18
LSM1-202ENST00000520286 CLUAP1Q96AJ1 413 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 CDCA7LQ96GN5 454 aa13.9□□□□□ -0.18
LSM1-202ENST00000520286 APBB1O00213 710 aa13.89□□□□□ -0.19
LSM1-202ENST00000520286 ZSWIM6Q9HCJ5 1215 aa13.89□□□□□ -0.19
LSM1-202ENST00000520286 MYSM1Q5VVJ2 828 aa13.88□□□□□ -0.19
LSM1-202ENST00000520286 GPR153Q6NV75 609 aa13.86□□□□□ -0.19
LSM1-202ENST00000520286 TRAK2O60296 914 aa13.84□□□□□ -0.19
LSM1-202ENST00000520286 CLK2P49760 499 aaKnown RBP13.84□□□□□ -0.19
LSM1-202ENST00000520286 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.84□□□□□ -0.19
LSM1-202ENST00000520286 TBC1D2Q9BYX2 928 aa13.84□□□□□ -0.19
LSM1-202ENST00000520286 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.83□□□□□ -0.2
LSM1-202ENST00000520286 DIXDC1Q155Q3 683 aa13.83□□□□□ -0.2
LSM1-202ENST00000520286 LHX6Q9UPM6 363 aa13.83□□□□□ -0.2
LSM1-202ENST00000520286 POTEJP0CG39 1038 aa13.82□□□□□ -0.2
LSM1-202ENST00000520286 PPP4R3BQ5MIZ7 849 aa13.82□□□□□ -0.2
LSM1-202ENST00000520286 ZNF710Q8N1W2 664 aa13.82□□□□□ -0.2
LSM1-202ENST00000520286 COL9A1P20849 921 aa13.81□□□□□ -0.2
LSM1-202ENST00000520286 FAM198AQ9UFP1 575 aa13.81□□□□□ -0.2
LSM1-202ENST00000520286 RCCD1A6NED2 376 aa13.8□□□□□ -0.2
LSM1-202ENST00000520286 EYA1Q99502 592 aa13.79□□□□□ -0.2
LSM1-202ENST00000520286 BCL2L12Q9HB09 334 aa13.79□□□□□ -0.2
LSM1-202ENST00000520286 PSDA5PKW4 1024 aaPredicted RBP13.78□□□□□ -0.2
LSM1-202ENST00000520286 TSKSQ9UJT2 592 aa13.76□□□□□ -0.21
LSM1-202ENST00000520286 PPP1R3GB7ZBB8 358 aa13.75□□□□□ -0.21
LSM1-202ENST00000520286 RAD21O60216 631 aa13.75□□□□□ -0.21
LSM1-202ENST00000520286 RFC5P40937 340 aa13.75□□□□□ -0.21
LSM1-202ENST00000520286 PROSER2Q86WR7 435 aaPredicted RBP13.75□□□□□ -0.21
LSM1-202ENST00000520286 SPIRE2Q8WWL2 714 aa13.75□□□□□ -0.21
LSM1-202ENST00000520286 SPDYE5A6NIY4 337 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 CD46P15529 392 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 PTPREP23469 700 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 NUDT18Q6ZVK8 323 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 RIC3Q7Z5B4 369 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 SULF1Q8IWU6 871 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 SCUBE2Q9NQ36 999 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 LIMD1Q9UGP4 676 aa13.74□□□□□ -0.21
LSM1-202ENST00000520286 POTEB2H3BUK9 544 aa13.73□□□□□ -0.21
LSM1-202ENST00000520286 BANK1Q8NDB2 785 aa13.73□□□□□ -0.21
LSM1-202ENST00000520286 POM121Q96HA1 1249 aa13.73□□□□□ -0.21
LSM1-202ENST00000520286 NBPF26B4DH59 902 aa13.72□□□□□ -0.21
LSM1-202ENST00000520286 DNAJB2P25686 324 aa13.72□□□□□ -0.21
LSM1-202ENST00000520286 C3orf80F5H4A9 247 aa13.71□□□□□ -0.21
LSM1-202ENST00000520286 CCDC82Q8N4S0 544 aa13.71□□□□□ -0.21
LSM1-202ENST00000520286 DDX11L8A8MPP1 907 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms