RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 RAB3GAP2Q9H2M9 1393 aa31.37■■■□□ 2.61
LSM6-207ENST00000515311 MROH1Q8NDA8 1641 aa31.36■■■□□ 2.61
LSM6-207ENST00000515311 PRDM15P57071 1507 aaPredicted RBP31.35■■■□□ 2.61
LSM6-207ENST00000515311 ACIN1Q9UKV3 1341 aaKnown RBP31.35■■■□□ 2.61
LSM6-207ENST00000515311 HRCP23327 699 aa31.33■■■□□ 2.61
LSM6-207ENST00000515311 ARID4BQ4LE39 1312 aaPredicted RBP31.32■■■□□ 2.6
LSM6-207ENST00000515311 FAM135AQ9P2D6 1515 aa31.29■■■□□ 2.6
LSM6-207ENST00000515311 VWDEQ8N2E2 1590 aa31.27■■■□□ 2.6
LSM6-207ENST00000515311 KDM5DQ9BY66 1539 aa31.27■■■□□ 2.6
LSM6-207ENST00000515311 ZC3H13Q5T200 1668 aaKnown RBP31.25■■■□□ 2.59
LSM6-207ENST00000515311 IQGAP3Q86VI3 1631 aa31.25■■■□□ 2.59
LSM6-207ENST00000515311 GGT6Q6P531 493 aa31.24■■■□□ 2.59
LSM6-207ENST00000515311 PPP6R1Q9UPN7 881 aa31.24■■■□□ 2.59
LSM6-207ENST00000515311 KANK1Q14678 1352 aa31.23■■■□□ 2.59
LSM6-207ENST00000515311 NUP155O75694 1391 aa31.2■■■□□ 2.59
LSM6-207ENST00000515311 ADAMTSL3P82987 1691 aa31.2■■■□□ 2.59
LSM6-207ENST00000515311 ABCC3O15438 1527 aa31.19■■■□□ 2.58
LSM6-207ENST00000515311 CEP152O94986 1710 aa31.19■■■□□ 2.58
LSM6-207ENST00000515311 MLECQ14165 292 aa31.19■■■□□ 2.58
LSM6-207ENST00000515311 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.19■■■□□ 2.581e-6■■■■□ 22.6
LSM6-207ENST00000515311 FER1L4A9Z1Z3 1794 aa31.19■■■□□ 2.58
LSM6-207ENST00000515311 LMTK2Q8IWU2 1503 aa31.19■■■□□ 2.58
LSM6-207ENST00000515311 TRIM52Q96A61 297 aa31.16■■■□□ 2.58
LSM6-207ENST00000515311 CLTCQ00610 1675 aaKnown RBP31.16■■■□□ 2.58
LSM6-207ENST00000515311 TET3O43151 1660 aa31.15■■■□□ 2.58
LSM6-207ENST00000515311 PZPP20742 1482 aa31.14■■■□□ 2.58
LSM6-207ENST00000515311 MROH2AA6NES4 1674 aa31.14■■■□□ 2.58
LSM6-207ENST00000515311 CNTLNQ9NXG0 1405 aa31.14■■■□□ 2.58
LSM6-207ENST00000515311 WASHC2CQ9Y4E1 1318 aa31.13■■■□□ 2.57
LSM6-207ENST00000515311 CAMSAP1Q5T5Y3 1602 aa31.13■■■□□ 2.57
LSM6-207ENST00000515311 MADDQ8WXG6 1647 aa31.13■■■□□ 2.57
LSM6-207ENST00000515311 EFCAB6Q5THR3 1501 aa31.09■■■□□ 2.57
LSM6-207ENST00000515311 ESF1Q9H501 851 aaKnown RBP31.08■■■□□ 2.57
LSM6-207ENST00000515311 RIMS1Q86UR5 1692 aaKnown RBP31.06■■■□□ 2.56
LSM6-207ENST00000515311 ARHGAP31Q2M1Z3 1444 aa31.04■■■□□ 2.56
LSM6-207ENST00000515311 E9PCH4 1651 aa31.03■■■□□ 2.56
LSM6-207ENST00000515311 MPHOSPH9Q99550 1183 aa31.03■■■□□ 2.56
LSM6-207ENST00000515311 SLC4A1APQ9BWU0 796 aaKnown RBP31.03■■■□□ 2.56
LSM6-207ENST00000515311 RPRD2Q5VT52 1461 aaKnown RBP31.01■■■□□ 2.56
LSM6-207ENST00000515311 C3P01024 1663 aa30.99■■■□□ 2.55
LSM6-207ENST00000515311 NPATQ14207 1427 aa30.98■■■□□ 2.55
LSM6-207ENST00000515311 ZMYM3Q14202 1370 aa30.97■■■□□ 2.55
LSM6-207ENST00000515311 DHX57Q6P158 1386 aaKnown RBP30.94■■■□□ 2.54
LSM6-207ENST00000515311 PKD2Q13563 968 aa30.94■■■□□ 2.54
LSM6-207ENST00000515311 PREX1Q8TCU6 1659 aa30.93■■■□□ 2.54
LSM6-207ENST00000515311 SPHKAPQ2M3C7 1700 aa30.9■■■□□ 2.54
LSM6-207ENST00000515311 PTPRMP28827 1452 aa30.9■■■□□ 2.54
LSM6-207ENST00000515311 KDM4FA0A1W2PPD8 638 aa30.9■■■□□ 2.54
LSM6-207ENST00000515311 CFAP65Q6ZU64 1925 aaKnown RBP30.88■■■□□ 2.53
LSM6-207ENST00000515311 SPATA31D1Q6ZQQ2 1576 aa30.88■■■□□ 2.53
LSM6-207ENST00000515311 ERVK-7P63135 1459 aa30.87■■■□□ 2.53
LSM6-207ENST00000515311 PTPRTO14522 1441 aa30.85■■■□□ 2.53
LSM6-207ENST00000515311 NOS1P29475 1434 aa30.85■■■□□ 2.53
LSM6-207ENST00000515311 TRPM2O94759 1503 aa30.83■■■□□ 2.53
LSM6-207ENST00000515311 SYNMO15061 1565 aa30.81■■■□□ 2.52
LSM6-207ENST00000515311 FOXD1Q16676 465 aa30.81■■■□□ 2.52
LSM6-207ENST00000515311 CEBPAP49715 358 aaPredicted RBP30.8■■■□□ 2.52
LSM6-207ENST00000515311 PLA2R1Q13018 1463 aa30.8■■■□□ 2.52
LSM6-207ENST00000515311 FBXO31Q5XUX0 539 aaPredicted RBP30.79■■■□□ 2.52
LSM6-207ENST00000515311 ANKRD30BQ9BXX2 1392 aa30.79■■■□□ 2.52
LSM6-207ENST00000515311 PIK3C2BO00750 1634 aa30.76■■■□□ 2.52
LSM6-207ENST00000515311 TNRQ92752 1358 aa30.75■■■□□ 2.51
LSM6-207ENST00000515311 SETD1BQ9UPS6 1966 aaKnown RBP30.73■■■□□ 2.51
LSM6-207ENST00000515311 CLTCL1P53675 1640 aa30.72■■■□□ 2.51
LSM6-207ENST00000515311 CLSPNQ9HAW4 1339 aa30.72■■■□□ 2.51
LSM6-207ENST00000515311 MYO3AQ8NEV4 1616 aa30.7■■■□□ 2.51
LSM6-207ENST00000515311 PLPPR3Q6T4P5 718 aa30.69■■■□□ 2.5
LSM6-207ENST00000515311 CCER1Q8TC90 406 aaPredicted RBP30.69■■■□□ 2.5
LSM6-207ENST00000515311 CCDC144AA2RUR9 1427 aa30.69■■■□□ 2.5
LSM6-207ENST00000515311 UGGT1Q9NYU2 1555 aa30.69■■■□□ 2.5
LSM6-207ENST00000515311 NLRP1Q9C000 1473 aa30.69■■■□□ 2.5
LSM6-207ENST00000515311 SLC52A1Q9NWF4 448 aa30.68■■■□□ 2.5
LSM6-207ENST00000515311 KDM5AP29375 1690 aaKnown RBP30.65■■■□□ 2.5
LSM6-207ENST00000515311 KIF1BO60333 1816 aa30.64■■■□□ 2.5
LSM6-207ENST00000515311 ZNF142P52746 1687 aaPredicted RBP30.64■■■□□ 2.5
LSM6-207ENST00000515311 IDI1Q13907 227 aa30.6■■■□□ 2.49
LSM6-207ENST00000515311 NEURL4Q96JN8 1562 aa30.6■■■□□ 2.49
LSM6-207ENST00000515311 CEP170BQ9Y4F5 1589 aaPredicted RBP30.59■■■□□ 2.49
LSM6-207ENST00000515311 ADGRB3O60242 1522 aa30.59■■■□□ 2.49
LSM6-207ENST00000515311 TMEM131LA2VDJ0 1609 aa30.58■■■□□ 2.49
LSM6-207ENST00000515311 A2ML1A8K2U0 1454 aa30.58■■■□□ 2.49
LSM6-207ENST00000515311 UBR1Q8IWV7 1749 aa30.57■■■□□ 2.48
LSM6-207ENST00000515311 UHRF1BP1Q6BDS2 1440 aa30.56■■■□□ 2.48
LSM6-207ENST00000515311 MYO5BQ9ULV0 1848 aa30.53■■■□□ 2.48
LSM6-207ENST00000515311 SPATA31E1Q6ZUB1 1445 aa30.53■■■□□ 2.48
LSM6-207ENST00000515311 SIN3AQ96ST3 1273 aa30.51■■■□□ 2.47
LSM6-207ENST00000515311 STAG3Q9UJ98 1225 aa30.46■■■□□ 2.47
LSM6-207ENST00000515311 CHGAP10645 457 aaKnown RBP30.44■■■□□ 2.46
LSM6-207ENST00000515311 NEUROD1Q13562 356 aa30.44■■■□□ 2.46
LSM6-207ENST00000515311 LMTK3Q96Q04 1460 aa30.43■■■□□ 2.46
LSM6-207ENST00000515311 IFT172Q9UG01 1749 aa30.42■■■□□ 2.46
LSM6-207ENST00000515311 THEMISQ8N1K5 641 aaPredicted RBP30.41■■■□□ 2.46
LSM6-207ENST00000515311 SLIT1O75093 1534 aa30.4■■■□□ 2.46
LSM6-207ENST00000515311 PPLO60437 1756 aa30.39■■■□□ 2.46
LSM6-207ENST00000515311 ARHGAP23Q9P227 1491 aa30.38■■■□□ 2.45
LSM6-207ENST00000515311 NEXMIFQ5QGS0 1516 aa30.38■■■□□ 2.45
LSM6-207ENST00000515311 TMEM2Q9UHN6 1383 aa30.38■■■□□ 2.45
LSM6-207ENST00000515311 RPGRIP1LQ68CZ1 1315 aa30.37■■■□□ 2.45
LSM6-207ENST00000515311 RGL3Q3MIN7 710 aa30.36■■■□□ 2.45
LSM6-207ENST00000515311 TONSLQ96HA7 1378 aa30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms