RNA–Protein interactions for RNA: ENST00000514773.1

PCDH1-207, Transcript of protocadherin 1, humanhuman

TSL 4

Gene PCDH1, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-207ENST00000514773 ROCK1Q13464 1354 aa27.25■■□□□ 1.95
PCDH1-207ENST00000514773 PTPRKQ15262 1439 aa27.22■■□□□ 1.95
PCDH1-207ENST00000514773 FAM135AQ9P2D6 1515 aa27.21■■□□□ 1.95
PCDH1-207ENST00000514773 WASHC2CQ9Y4E1 1318 aa27.18■■□□□ 1.94
PCDH1-207ENST00000514773 RNF17Q9BXT8 1623 aaKnown RBP27.17■■□□□ 1.94
PCDH1-207ENST00000514773 PLPPR3Q6T4P5 718 aa27.16■■□□□ 1.94
PCDH1-207ENST00000514773 MROH2AA6NES4 1674 aa27.16■■□□□ 1.94
PCDH1-207ENST00000514773 ANKRD50Q9ULJ7 1429 aa27.16■■□□□ 1.94
PCDH1-207ENST00000514773 KDM5DQ9BY66 1539 aa27.15■■□□□ 1.94
PCDH1-207ENST00000514773 ZMYM3Q14202 1370 aa27.14■■□□□ 1.94
PCDH1-207ENST00000514773 CLTCQ00610 1675 aaKnown RBP27.13■■□□□ 1.93
PCDH1-207ENST00000514773 KANK1Q14678 1352 aa27.12■■□□□ 1.93
PCDH1-207ENST00000514773 CEBPAP49715 358 aaPredicted RBP27.11■■□□□ 1.93
PCDH1-207ENST00000514773 C3P01024 1663 aa27.09■■□□□ 1.93
PCDH1-207ENST00000514773 ZC3H13Q5T200 1668 aaKnown RBP27.08■■□□□ 1.92
PCDH1-207ENST00000514773 PRDM15P57071 1507 aaPredicted RBP27.07■■□□□ 1.92
PCDH1-207ENST00000514773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.07■■□□□ 1.92
PCDH1-207ENST00000514773 DEPDC5O75140 1603 aa27.06■■□□□ 1.92
PCDH1-207ENST00000514773 NPATQ14207 1427 aa27.05■■□□□ 1.92
PCDH1-207ENST00000514773 MROH1Q8NDA8 1641 aa27.05■■□□□ 1.92
PCDH1-207ENST00000514773 ABCC3O15438 1527 aa27.04■■□□□ 1.92
PCDH1-207ENST00000514773 SETD1BQ9UPS6 1966 aaKnown RBP27.04■■□□□ 1.92
PCDH1-207ENST00000514773 PZPP20742 1482 aa26.99■■□□□ 1.91
PCDH1-207ENST00000514773 HFM1A2PYH4 1435 aa26.99■■□□□ 1.91
PCDH1-207ENST00000514773 NAIPQ13075 1403 aa26.97■■□□□ 1.91
PCDH1-207ENST00000514773 PREX1Q8TCU6 1659 aa26.96■■□□□ 1.91
PCDH1-207ENST00000514773 UHRF1BP1Q6BDS2 1440 aa26.96■■□□□ 1.91
PCDH1-207ENST00000514773 VWDEQ8N2E2 1590 aa26.95■■□□□ 1.9
PCDH1-207ENST00000514773 CEP152O94986 1710 aa26.95■■□□□ 1.9
PCDH1-207ENST00000514773 LMTK2Q8IWU2 1503 aa26.95■■□□□ 1.9
PCDH1-207ENST00000514773 UNC13BO14795 1591 aa26.94■■□□□ 1.9
PCDH1-207ENST00000514773 GCC2Q8IWJ2 1684 aa26.94■■□□□ 1.9
PCDH1-207ENST00000514773 CAMSAP1Q5T5Y3 1602 aa26.94■■□□□ 1.9
PCDH1-207ENST00000514773 ARHGAP31Q2M1Z3 1444 aa26.93■■□□□ 1.9
PCDH1-207ENST00000514773 LMTK3Q96Q04 1460 aa26.92■■□□□ 1.9
PCDH1-207ENST00000514773 NUP155O75694 1391 aa26.9■■□□□ 1.9
PCDH1-207ENST00000514773 FBXO31Q5XUX0 539 aaPredicted RBP26.9■■□□□ 1.9
PCDH1-207ENST00000514773 ACIN1Q9UKV3 1341 aaKnown RBP26.89■■□□□ 1.89
PCDH1-207ENST00000514773 TNRQ92752 1358 aa26.88■■□□□ 1.89
PCDH1-207ENST00000514773 EFCAB6Q5THR3 1501 aa26.85■■□□□ 1.89
PCDH1-207ENST00000514773 IQGAP3Q86VI3 1631 aa26.84■■□□□ 1.89
PCDH1-207ENST00000514773 TET3O43151 1660 aa26.83■■□□□ 1.89
PCDH1-207ENST00000514773 ERVK-7P63135 1459 aa26.83■■□□□ 1.89
PCDH1-207ENST00000514773 RPRD2Q5VT52 1461 aaKnown RBP26.83■■□□□ 1.89
PCDH1-207ENST00000514773 SPATA31D1Q6ZQQ2 1576 aa26.83■■□□□ 1.89
PCDH1-207ENST00000514773 MYO3AQ8NEV4 1616 aa26.82■■□□□ 1.88
PCDH1-207ENST00000514773 NLRP1Q9C000 1473 aa26.81■■□□□ 1.88
PCDH1-207ENST00000514773 TRIM52Q96A61 297 aa26.8■■□□□ 1.88
PCDH1-207ENST00000514773 HSPA2P54652 639 aa26.79■■□□□ 1.88
PCDH1-207ENST00000514773 SETD5Q9C0A6 1442 aa26.79■■□□□ 1.88
PCDH1-207ENST00000514773 A2ML1A8K2U0 1454 aa26.78■■□□□ 1.88
PCDH1-207ENST00000514773 CEP170BQ9Y4F5 1589 aaPredicted RBP26.78■■□□□ 1.88
PCDH1-207ENST00000514773 CFAP65Q6ZU64 1925 aaKnown RBP26.78■■□□□ 1.88
PCDH1-207ENST00000514773 ZNF142P52746 1687 aaPredicted RBP26.77■■□□□ 1.88
PCDH1-207ENST00000514773 THEMISQ8N1K5 641 aaPredicted RBP26.72■■□□□ 1.87
PCDH1-207ENST00000514773 NOS1P29475 1434 aa26.72■■□□□ 1.87
PCDH1-207ENST00000514773 SLC52A1Q9NWF4 448 aa26.71■■□□□ 1.87
PCDH1-207ENST00000514773 SLC4A1APQ9BWU0 796 aaKnown RBP26.69■■□□□ 1.86
PCDH1-207ENST00000514773 E9PCH4 1651 aa26.69■■□□□ 1.86
PCDH1-207ENST00000514773 UGGT1Q9NYU2 1555 aa26.68■■□□□ 1.86
PCDH1-207ENST00000514773 DMRT2Q9Y5R5 561 aa26.68■■□□□ 1.86
PCDH1-207ENST00000514773 HRCP23327 699 aa26.66■■□□□ 1.86
PCDH1-207ENST00000514773 STAG3Q9UJ98 1225 aa26.66■■□□□ 1.86
PCDH1-207ENST00000514773 RAB3GAP2Q9H2M9 1393 aa26.66■■□□□ 1.86
PCDH1-207ENST00000514773 PLA2R1Q13018 1463 aa26.65■■□□□ 1.86
PCDH1-207ENST00000514773 SYNMO15061 1565 aa26.64■■□□□ 1.86
PCDH1-207ENST00000514773 PKD2Q13563 968 aa26.64■■□□□ 1.86
PCDH1-207ENST00000514773 IDI1Q13907 227 aa26.63■■□□□ 1.85
PCDH1-207ENST00000514773 TRIM26Q12899 539 aaPredicted RBP26.61■■□□□ 1.85
PCDH1-207ENST00000514773 ANKLE2Q86XL3 938 aa26.59■■□□□ 1.85
PCDH1-207ENST00000514773 MPHOSPH9Q99550 1183 aa26.59■■□□□ 1.85
PCDH1-207ENST00000514773 KDM5AP29375 1690 aaKnown RBP26.58■■□□□ 1.85
PCDH1-207ENST00000514773 PIK3C2BO00750 1634 aa26.57■■□□□ 1.84
PCDH1-207ENST00000514773 PTPRTO14522 1441 aa26.57■■□□□ 1.84
PCDH1-207ENST00000514773 UBR1Q8IWV7 1749 aa26.57■■□□□ 1.84
PCDH1-207ENST00000514773 STRCQ7RTU9 1775 aa26.56■■□□□ 1.84
PCDH1-207ENST00000514773 SPHKAPQ2M3C7 1700 aa26.55■■□□□ 1.84
PCDH1-207ENST00000514773 EID1Q9Y6B2 187 aa26.53■■□□□ 1.84
PCDH1-207ENST00000514773 NCKAP5LQ9HCH0 1330 aa26.53■■□□□ 1.84
PCDH1-207ENST00000514773 ADGRB3O60242 1522 aa26.53■■□□□ 1.84
PCDH1-207ENST00000514773 TRPM2O94759 1503 aa26.51■■□□□ 1.83
PCDH1-207ENST00000514773 CHGAP10645 457 aaKnown RBP26.5■■□□□ 1.83
PCDH1-207ENST00000514773 HDGFP51858 240 aaKnown RBP26.5■■□□□ 1.83
PCDH1-207ENST00000514773 TMEM2Q9UHN6 1383 aa26.49■■□□□ 1.83
PCDH1-207ENST00000514773 SLIT1O75093 1534 aa26.49■■□□□ 1.83
PCDH1-207ENST00000514773 POLR1AO95602 1720 aaPredicted RBP26.48■■□□□ 1.83
PCDH1-207ENST00000514773 ARHGAP23Q9P227 1491 aa26.47■■□□□ 1.83
PCDH1-207ENST00000514773 TXNDC2Q86VQ3 553 aa26.46■■□□□ 1.83
PCDH1-207ENST00000514773 TMEM131LA2VDJ0 1609 aa26.45■■□□□ 1.82
PCDH1-207ENST00000514773 SCAF11Q99590 1463 aaKnown RBP26.44■■□□□ 1.82
PCDH1-207ENST00000514773 FOXD1Q16676 465 aa26.44■■□□□ 1.82
PCDH1-207ENST00000514773 MED14O60244 1454 aa26.43■■□□□ 1.82
PCDH1-207ENST00000514773 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.42■■□□□ 1.82
PCDH1-207ENST00000514773 CCDC144AA2RUR9 1427 aa26.41■■□□□ 1.82
PCDH1-207ENST00000514773 NPHP4O75161 1426 aaPredicted RBP26.41■■□□□ 1.82
PCDH1-207ENST00000514773 CLTCL1P53675 1640 aa26.4■■□□□ 1.82
PCDH1-207ENST00000514773 LTKP29376 864 aa26.4■■□□□ 1.82
PCDH1-207ENST00000514773 NEURL4Q96JN8 1562 aa26.39■■□□□ 1.82
PCDH1-207ENST00000514773 PPP1R15AO75807 674 aaPredicted RBP26.38■■□□□ 1.81
PCDH1-207ENST00000514773 ZNF326Q5BKZ1 582 aaKnown RBP26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms