RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MYO3AQ8NEV4 1616 aa30.97■■■□□ 2.55
USP53-208ENST00000514305 PTPRTO14522 1441 aa30.96■■■□□ 2.55
USP53-208ENST00000514305 ZNF142P52746 1687 aaPredicted RBP30.95■■■□□ 2.55
USP53-208ENST00000514305 TSPY4P0CV99 314 aa30.94■■■□□ 2.54
USP53-208ENST00000514305 TSPY10P0CW01 314 aa30.94■■■□□ 2.54
USP53-208ENST00000514305 PTPRKQ15262 1439 aa30.94■■■□□ 2.54
USP53-208ENST00000514305 NCOA1Q15788 1441 aa30.94■■■□□ 2.54
USP53-208ENST00000514305 CAMSAP1Q5T5Y3 1602 aa30.94■■■□□ 2.54
USP53-208ENST00000514305 HOXD11P31277 338 aaPredicted RBP30.92■■■□□ 2.54
USP53-208ENST00000514305 KIF3BO15066 747 aa30.91■■■□□ 2.54
USP53-208ENST00000514305 FAM135AQ9P2D6 1515 aa30.89■■■□□ 2.54
USP53-208ENST00000514305 CEP170BQ9Y4F5 1589 aaPredicted RBP30.89■■■□□ 2.54
USP53-208ENST00000514305 PPARGC1BQ86YN6 1023 aaKnown RBP30.88■■■□□ 2.53
USP53-208ENST00000514305 KDM5DQ9BY66 1539 aa30.88■■■□□ 2.53
USP53-208ENST00000514305 MYOM3Q5VTT5 1437 aa30.87■■■□□ 2.53
USP53-208ENST00000514305 MIA2Q96PC5 1412 aa30.86■■■□□ 2.53
USP53-208ENST00000514305 MAST1Q9Y2H9 1570 aa30.85■■■□□ 2.53
USP53-208ENST00000514305 PLA2R1Q13018 1463 aa30.82■■■□□ 2.52
USP53-208ENST00000514305 WASHC2CQ9Y4E1 1318 aa30.81■■■□□ 2.52
USP53-208ENST00000514305 A2ML1A8K2U0 1454 aa30.77■■■□□ 2.52
USP53-208ENST00000514305 PZPP20742 1482 aa30.77■■■□□ 2.52
USP53-208ENST00000514305 NCKAP5LQ9HCH0 1330 aa30.76■■■□□ 2.52
USP53-208ENST00000514305 RNF216Q9NWF9 866 aaPredicted RBP30.76■■■□□ 2.51
USP53-208ENST00000514305 RNF17Q9BXT8 1623 aaKnown RBP30.76■■■□□ 2.51
USP53-208ENST00000514305 EIF2AK4Q9P2K8 1649 aaKnown RBP30.76■■■□□ 2.51
USP53-208ENST00000514305 PKD2Q13563 968 aa30.75■■■□□ 2.51
USP53-208ENST00000514305 DNMT1P26358 1616 aaKnown RBP30.74■■■□□ 2.51
USP53-208ENST00000514305 LTBP4Q8N2S1 1624 aa30.74■■■□□ 2.51
USP53-208ENST00000514305 TNRQ92752 1358 aa30.74■■■□□ 2.51
USP53-208ENST00000514305 ZC3H13Q5T200 1668 aaKnown RBP30.73■■■□□ 2.51
USP53-208ENST00000514305 FGD6Q6ZV73 1430 aa30.73■■■□□ 2.51
USP53-208ENST00000514305 TCOF1Q13428 1488 aaKnown RBP30.72■■■□□ 2.51
USP53-208ENST00000514305 FBXO31Q5XUX0 539 aaPredicted RBP30.71■■■□□ 2.51
USP53-208ENST00000514305 CROCC2H7BZ55 1655 aa30.7■■■□□ 2.5
USP53-208ENST00000514305 PTPN23Q9H3S7 1636 aa30.69■■■□□ 2.5
USP53-208ENST00000514305 POLR1AO95602 1720 aaPredicted RBP30.67■■■□□ 2.5
USP53-208ENST00000514305 IQSEC2Q5JU85 1478 aa30.67■■■□□ 2.5
USP53-208ENST00000514305 DUOX2Q9NRD8 1548 aa30.67■■■□□ 2.5
USP53-208ENST00000514305 SHANK2Q9UPX8 1470 aa30.64■■■□□ 2.5
USP53-208ENST00000514305 ABCC3O15438 1527 aa30.64■■■□□ 2.5
USP53-208ENST00000514305 NLRP1Q9C000 1473 aa30.63■■■□□ 2.49
USP53-208ENST00000514305 FAM50AQ14320 339 aaKnown RBP30.63■■■□□ 2.49
USP53-208ENST00000514305 NCBP3Q53F19 620 aaKnown RBP30.63■■■□□ 2.49
USP53-208ENST00000514305 CEP152O94986 1710 aa30.61■■■□□ 2.49
USP53-208ENST00000514305 DCAF8L1A6NGE4 600 aa30.6■■■□□ 2.49
USP53-208ENST00000514305 MROH1Q8NDA8 1641 aa30.6■■■□□ 2.49
USP53-208ENST00000514305 ZNF335Q9H4Z2 1342 aaPredicted RBP30.6■■■□□ 2.49
USP53-208ENST00000514305 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.59■■■□□ 2.49
USP53-208ENST00000514305 UGGT1Q9NYU2 1555 aa30.58■■■□□ 2.49
USP53-208ENST00000514305 ABCC5O15440 1437 aa30.58■■■□□ 2.49
USP53-208ENST00000514305 KIF15Q9NS87 1388 aa30.58■■■□□ 2.49
USP53-208ENST00000514305 DAPK1P53355 1430 aa30.56■■■□□ 2.48
USP53-208ENST00000514305 THEMISQ8N1K5 641 aaPredicted RBP30.56■■■□□ 2.48
USP53-208ENST00000514305 ERBINQ96RT1 1412 aa30.56■■■□□ 2.48
USP53-208ENST00000514305 RRBP1Q9P2E9 1410 aaKnown RBP30.56■■■□□ 2.48
USP53-208ENST00000514305 SPATA31D1Q6ZQQ2 1576 aa30.55■■■□□ 2.48
USP53-208ENST00000514305 CFAP65Q6ZU64 1925 aaKnown RBP30.54■■■□□ 2.48
USP53-208ENST00000514305 NEURL4Q96JN8 1562 aa30.54■■■□□ 2.48
USP53-208ENST00000514305 RRP7BPQ9NSQ0 103 aa30.53■■■□□ 2.48
USP53-208ENST00000514305 PRDM15P57071 1507 aaPredicted RBP30.52■■■□□ 2.48
USP53-208ENST00000514305 ERVK-7P63135 1459 aa30.51■■■□□ 2.48
USP53-208ENST00000514305 ANKLE2Q86XL3 938 aa30.51■■■□□ 2.47
USP53-208ENST00000514305 DEPDC5O75140 1603 aa30.47■■■□□ 2.47
USP53-208ENST00000514305 ANKRD30AQ9BXX3 1397 aa30.46■■■□□ 2.47
USP53-208ENST00000514305 KANK1Q14678 1352 aa30.42■■■□□ 2.46
USP53-208ENST00000514305 CHIC2Q9UKJ5 165 aa30.42■■■□□ 2.46
USP53-208ENST00000514305 IQGAP1P46940 1657 aa30.42■■■□□ 2.46
USP53-208ENST00000514305 ARHGAP31Q2M1Z3 1444 aa30.41■■■□□ 2.46
USP53-208ENST00000514305 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.41■■■□□ 2.46
USP53-208ENST00000514305 MED14O60244 1454 aa30.41■■■□□ 2.46
USP53-208ENST00000514305 UBR1Q8IWV7 1749 aa30.41■■■□□ 2.46
USP53-208ENST00000514305 CPS1P31327 1500 aa30.41■■■□□ 2.46
USP53-208ENST00000514305 NPHP4O75161 1426 aaPredicted RBP30.4■■■□□ 2.46
USP53-208ENST00000514305 UBAP1LF5GYI3 381 aa30.4■■■□□ 2.46
USP53-208ENST00000514305 ITGAEP38570 1179 aa30.36■■■□□ 2.45
USP53-208ENST00000514305 VWDEQ8N2E2 1590 aa30.34■■■□□ 2.45
USP53-208ENST00000514305 ADGRL2O95490 1459 aa30.33■■■□□ 2.45
USP53-208ENST00000514305 LMTK2Q8IWU2 1503 aa30.31■■■□□ 2.44
USP53-208ENST00000514305 NPM3O75607 178 aaKnown RBP30.3■■■□□ 2.44
USP53-208ENST00000514305 DISP3Q9P2K9 1392 aa30.29■■■□□ 2.44
USP53-208ENST00000514305 SCAF11Q99590 1463 aaKnown RBP30.27■■■□□ 2.44
USP53-208ENST00000514305 PIK3C2BO00750 1634 aa30.27■■■□□ 2.44
USP53-208ENST00000514305 ROCK1Q13464 1354 aa30.26■■■□□ 2.43
USP53-208ENST00000514305 SLIT1O75093 1534 aa30.25■■■□□ 2.43
USP53-208ENST00000514305 EFCAB6Q5THR3 1501 aa30.24■■■□□ 2.43
USP53-208ENST00000514305 TOM1O60784 492 aa30.23■■■□□ 2.43
USP53-208ENST00000514305 STAG3Q9UJ98 1225 aa30.23■■■□□ 2.43
USP53-208ENST00000514305 ARHGAP23Q9P227 1491 aa30.23■■■□□ 2.43
USP53-208ENST00000514305 KDM5AP29375 1690 aaKnown RBP30.23■■■□□ 2.43
USP53-208ENST00000514305 TRIM26Q12899 539 aaPredicted RBP30.22■■■□□ 2.43
USP53-208ENST00000514305 ANKRD50Q9ULJ7 1429 aa30.22■■■□□ 2.43
USP53-208ENST00000514305 EID1Q9Y6B2 187 aa30.21■■■□□ 2.43
USP53-208ENST00000514305 SYNMO15061 1565 aa30.2■■■□□ 2.43
USP53-208ENST00000514305 TXNDC2Q86VQ3 553 aa30.2■■■□□ 2.43
USP53-208ENST00000514305 STRCP1A6NGW2 1772 aa30.2■■■□□ 2.42
USP53-208ENST00000514305 PIP4K2BP78356 416 aa30.17■■■□□ 2.42
USP53-208ENST00000514305 LTKP29376 864 aa30.16■■■□□ 2.42
USP53-208ENST00000514305 TMEM2Q9UHN6 1383 aa30.15■■■□□ 2.42
USP53-208ENST00000514305 IDI1Q13907 227 aa30.13■■■□□ 2.41
USP53-208ENST00000514305 TET3O43151 1660 aa30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms