RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 DHX29Q7Z478 1369 aaKnown RBP19.29■□□□□ 0.68
LIMCH1-220ENST00000514190 FER1L4A9Z1Z3 1794 aa19.27■□□□□ 0.67
LIMCH1-220ENST00000514190 MLECQ14165 292 aa19.26■□□□□ 0.67
LIMCH1-220ENST00000514190 ERBINQ96RT1 1412 aa19.25■□□□□ 0.67
LIMCH1-220ENST00000514190 A2MP01023 1474 aa19.24■□□□□ 0.67
LIMCH1-220ENST00000514190 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
LIMCH1-220ENST00000514190 AGLP35573 1532 aa19.23■□□□□ 0.67
LIMCH1-220ENST00000514190 KIF3BO15066 747 aa19.2■□□□□ 0.66
LIMCH1-220ENST00000514190 CCER1Q8TC90 406 aaPredicted RBP19.19■□□□□ 0.66
LIMCH1-220ENST00000514190 DHX57Q6P158 1386 aaKnown RBP19.19■□□□□ 0.66
LIMCH1-220ENST00000514190 NUP155O75694 1391 aa19.17■□□□□ 0.66
LIMCH1-220ENST00000514190 MPHOSPH9Q99550 1183 aa19.16■□□□□ 0.66
LIMCH1-220ENST00000514190 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.15■□□□□ 0.66
LIMCH1-220ENST00000514190 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
LIMCH1-220ENST00000514190 SLC4A1APQ9BWU0 796 aaKnown RBP19.13■□□□□ 0.65
LIMCH1-220ENST00000514190 LMTK3Q96Q04 1460 aa19.13■□□□□ 0.65
LIMCH1-220ENST00000514190 EIF2AK4Q9P2K8 1649 aaKnown RBP19.13■□□□□ 0.65
LIMCH1-220ENST00000514190 KDM5DQ9BY66 1539 aa19.11■□□□□ 0.65
LIMCH1-220ENST00000514190 PZPP20742 1482 aa19.11■□□□□ 0.65
LIMCH1-220ENST00000514190 UNC13BO14795 1591 aa19.1■□□□□ 0.65
LIMCH1-220ENST00000514190 CLSPNQ9HAW4 1339 aa19.1■□□□□ 0.65
LIMCH1-220ENST00000514190 KANK1Q14678 1352 aa19.09■□□□□ 0.65
LIMCH1-220ENST00000514190 GGT6Q6P531 493 aa19.09■□□□□ 0.65
LIMCH1-220ENST00000514190 ESF1Q9H501 851 aaKnown RBP19.08■□□□□ 0.64
LIMCH1-220ENST00000514190 CNTLNQ9NXG0 1405 aa19.08■□□□□ 0.64
LIMCH1-220ENST00000514190 CEBPAP49715 358 aaPredicted RBP19.07■□□□□ 0.64
LIMCH1-220ENST00000514190 C3P01024 1663 aa19.07■□□□□ 0.64
LIMCH1-220ENST00000514190 DEPDC5O75140 1603 aa19.07■□□□□ 0.64
LIMCH1-220ENST00000514190 PREX1Q8TCU6 1659 aa19.06■□□□□ 0.64
LIMCH1-220ENST00000514190 PKD2Q13563 968 aa19.06■□□□□ 0.64
LIMCH1-220ENST00000514190 FAM135AQ9P2D6 1515 aa19.05■□□□□ 0.64
LIMCH1-220ENST00000514190 RNF17Q9BXT8 1623 aaKnown RBP19.05■□□□□ 0.64
LIMCH1-220ENST00000514190 PPP6R1Q9UPN7 881 aa19.05■□□□□ 0.64
LIMCH1-220ENST00000514190 MROH2AA6NES4 1674 aa19.05■□□□□ 0.64
LIMCH1-220ENST00000514190 MROH1Q8NDA8 1641 aa19.04■□□□□ 0.64
LIMCH1-220ENST00000514190 PRDM15P57071 1507 aaPredicted RBP19.04■□□□□ 0.64
LIMCH1-220ENST00000514190 VWDEQ8N2E2 1590 aa19.03■□□□□ 0.64
LIMCH1-220ENST00000514190 IQGAP3Q86VI3 1631 aa19.03■□□□□ 0.64
LIMCH1-220ENST00000514190 FOXD1Q16676 465 aa19.02■□□□□ 0.64
LIMCH1-220ENST00000514190 WASHC2CQ9Y4E1 1318 aa19.01■□□□□ 0.63
LIMCH1-220ENST00000514190 SETD1BQ9UPS6 1966 aaKnown RBP19.01■□□□□ 0.63
LIMCH1-220ENST00000514190 CLTCQ00610 1675 aaKnown RBP19.01■□□□□ 0.63
LIMCH1-220ENST00000514190 HSPA2P54652 639 aa18.99■□□□□ 0.63
LIMCH1-220ENST00000514190 LMTK2Q8IWU2 1503 aa18.99■□□□□ 0.63
LIMCH1-220ENST00000514190 ANKRD30BQ9BXX2 1392 aa18.98■□□□□ 0.63
LIMCH1-220ENST00000514190 UHRF1BP1Q6BDS2 1440 aa18.98■□□□□ 0.63
LIMCH1-220ENST00000514190 ZMYM3Q14202 1370 aa18.97■□□□□ 0.63
LIMCH1-220ENST00000514190 ABCC3O15438 1527 aa18.95■□□□□ 0.62
LIMCH1-220ENST00000514190 NPATQ14207 1427 aa18.95■□□□□ 0.62
LIMCH1-220ENST00000514190 ZEB1P37275 1124 aaPredicted RBP18.95■□□□□ 0.62
LIMCH1-220ENST00000514190 SIN3AQ96ST3 1273 aa18.95■□□□□ 0.62
LIMCH1-220ENST00000514190 TET3O43151 1660 aa18.93■□□□□ 0.62
LIMCH1-220ENST00000514190 NEUROD1Q13562 356 aa18.91■□□□□ 0.62
LIMCH1-220ENST00000514190 ARHGAP31Q2M1Z3 1444 aa18.91■□□□□ 0.62
LIMCH1-220ENST00000514190 PLA2R1Q13018 1463 aa18.9■□□□□ 0.62
LIMCH1-220ENST00000514190 EFCAB6Q5THR3 1501 aa18.9■□□□□ 0.62
LIMCH1-220ENST00000514190 PTPRTO14522 1441 aa18.89■□□□□ 0.61
LIMCH1-220ENST00000514190 RPRD2Q5VT52 1461 aaKnown RBP18.89■□□□□ 0.61
LIMCH1-220ENST00000514190 E9PCH4 1651 aa18.88■□□□□ 0.61
LIMCH1-220ENST00000514190 ZC3H13Q5T200 1668 aaKnown RBP18.88■□□□□ 0.61
LIMCH1-220ENST00000514190 CEP152O94986 1710 aa18.88■□□□□ 0.61
LIMCH1-220ENST00000514190 MYO3AQ8NEV4 1616 aa18.86■□□□□ 0.61
LIMCH1-220ENST00000514190 TIMELESSQ9UNS1 1208 aa18.86■□□□□ 0.61
LIMCH1-220ENST00000514190 STRCQ7RTU9 1775 aa18.85■□□□□ 0.61
LIMCH1-220ENST00000514190 ZNF142P52746 1687 aaPredicted RBP18.85■□□□□ 0.61
LIMCH1-220ENST00000514190 CAMSAP1Q5T5Y3 1602 aa18.85■□□□□ 0.61
LIMCH1-220ENST00000514190 CCDC144AA2RUR9 1427 aa18.82■□□□□ 0.6
LIMCH1-220ENST00000514190 NOS1P29475 1434 aa18.82■□□□□ 0.6
LIMCH1-220ENST00000514190 CEP170BQ9Y4F5 1589 aaPredicted RBP18.81■□□□□ 0.6
LIMCH1-220ENST00000514190 FBXO31Q5XUX0 539 aaPredicted RBP18.81■□□□□ 0.6
LIMCH1-220ENST00000514190 TRPM2O94759 1503 aa18.8■□□□□ 0.6
LIMCH1-220ENST00000514190 DMRT2Q9Y5R5 561 aa18.79■□□□□ 0.6
LIMCH1-220ENST00000514190 TNRQ92752 1358 aa18.78■□□□□ 0.6
LIMCH1-220ENST00000514190 TONSLQ96HA7 1378 aa18.78■□□□□ 0.6
LIMCH1-220ENST00000514190 SLC52A1Q9NWF4 448 aa18.77■□□□□ 0.6
LIMCH1-220ENST00000514190 A2ML1A8K2U0 1454 aa18.77■□□□□ 0.59
LIMCH1-220ENST00000514190 L3MBTL2Q969R5 705 aa18.76■□□□□ 0.59
LIMCH1-220ENST00000514190 SPHKAPQ2M3C7 1700 aa18.76■□□□□ 0.59
LIMCH1-220ENST00000514190 ERVK-7P63135 1459 aa18.76■□□□□ 0.59
LIMCH1-220ENST00000514190 ILDR1Q86SU0 546 aaPredicted RBP18.75■□□□□ 0.59
LIMCH1-220ENST00000514190 IDI1Q13907 227 aa18.74■□□□□ 0.59
LIMCH1-220ENST00000514190 PPP1R15AO75807 674 aaPredicted RBP18.73■□□□□ 0.59
LIMCH1-220ENST00000514190 SPATA31D1Q6ZQQ2 1576 aa18.72■□□□□ 0.59
LIMCH1-220ENST00000514190 CFAP65Q6ZU64 1925 aaKnown RBP18.72■□□□□ 0.59
LIMCH1-220ENST00000514190 SPATA31E1Q6ZUB1 1445 aa18.72■□□□□ 0.59
LIMCH1-220ENST00000514190 SYNMO15061 1565 aa18.72■□□□□ 0.59
LIMCH1-220ENST00000514190 NLRP1Q9C000 1473 aa18.71■□□□□ 0.59
LIMCH1-220ENST00000514190 RGL3Q3MIN7 710 aa18.71■□□□□ 0.59
LIMCH1-220ENST00000514190 UGGT1Q9NYU2 1555 aa18.71■□□□□ 0.59
LIMCH1-220ENST00000514190 CLTCL1P53675 1640 aa18.71■□□□□ 0.58
LIMCH1-220ENST00000514190 NCKAP5LQ9HCH0 1330 aa18.68■□□□□ 0.58
LIMCH1-220ENST00000514190 CHGAP10645 457 aaKnown RBP18.67■□□□□ 0.58
LIMCH1-220ENST00000514190 PIK3C2BO00750 1634 aa18.67■□□□□ 0.58
LIMCH1-220ENST00000514190 DCAF11Q8TEB1 546 aa18.66■□□□□ 0.58
LIMCH1-220ENST00000514190 FBXO41Q8TF61 875 aa18.66■□□□□ 0.58
LIMCH1-220ENST00000514190 NEURL4Q96JN8 1562 aa18.66■□□□□ 0.58
LIMCH1-220ENST00000514190 CERKQ8TCT0 537 aa18.65■□□□□ 0.58
LIMCH1-220ENST00000514190 STAC3Q96MF2 364 aa18.65■□□□□ 0.58
LIMCH1-220ENST00000514190 POLR1AO95602 1720 aaPredicted RBP18.64■□□□□ 0.57
LIMCH1-220ENST00000514190 THEMISQ8N1K5 641 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms