RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 GGT6Q6P531 493 aa14.32□□□□□ -0.12
PDGFC-209ENST00000513664 RNF17Q9BXT8 1623 aaKnown RBP14.32□□□□□ -0.12
PDGFC-209ENST00000513664 ANKRD50Q9ULJ7 1429 aa14.31□□□□□ -0.12
PDGFC-209ENST00000513664 PTPRMP28827 1452 aa14.31□□□□□ -0.12
PDGFC-209ENST00000513664 RIMS1Q86UR5 1692 aaKnown RBP14.3□□□□□ -0.12
PDGFC-209ENST00000513664 MROH2AA6NES4 1674 aa14.3□□□□□ -0.12
PDGFC-209ENST00000513664 DEPDC5O75140 1603 aa14.28□□□□□ -0.12
PDGFC-209ENST00000513664 KANK1Q14678 1352 aa14.28□□□□□ -0.12
PDGFC-209ENST00000513664 ZC3H13Q5T200 1668 aaKnown RBP14.28□□□□□ -0.12
PDGFC-209ENST00000513664 KDM5DQ9BY66 1539 aa14.28□□□□□ -0.12
PDGFC-209ENST00000513664 WASHC2CQ9Y4E1 1318 aa14.28□□□□□ -0.12
PDGFC-209ENST00000513664 PRDM15P57071 1507 aaPredicted RBP14.27□□□□□ -0.12
PDGFC-209ENST00000513664 HFM1A2PYH4 1435 aa14.26□□□□□ -0.13
PDGFC-209ENST00000513664 CLTCQ00610 1675 aaKnown RBP14.26□□□□□ -0.13
PDGFC-209ENST00000513664 ZMYM3Q14202 1370 aa14.24□□□□□ -0.13
PDGFC-209ENST00000513664 GCC2Q8IWJ2 1684 aa14.24□□□□□ -0.13
PDGFC-209ENST00000513664 ACIN1Q9UKV3 1341 aaKnown RBP14.24□□□□□ -0.13
PDGFC-209ENST00000513664 MROH1Q8NDA8 1641 aa14.24□□□□□ -0.13
PDGFC-209ENST00000513664 NAIPQ13075 1403 aa14.24□□□□□ -0.13
PDGFC-209ENST00000513664 ABCC3O15438 1527 aa14.23□□□□□ -0.13
PDGFC-209ENST00000513664 C3P01024 1663 aa14.23□□□□□ -0.13
PDGFC-209ENST00000513664 UNC13BO14795 1591 aa14.22□□□□□ -0.13
PDGFC-209ENST00000513664 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.13
PDGFC-209ENST00000513664 NPATQ14207 1427 aa14.22□□□□□ -0.13
PDGFC-209ENST00000513664 VWDEQ8N2E2 1590 aa14.21□□□□□ -0.14
PDGFC-209ENST00000513664 LMTK2Q8IWU2 1503 aa14.2□□□□□ -0.14
PDGFC-209ENST00000513664 PZPP20742 1482 aa14.19□□□□□ -0.14
PDGFC-209ENST00000513664 CAMSAP1Q5T5Y3 1602 aa14.19□□□□□ -0.14
PDGFC-209ENST00000513664 ARHGAP31Q2M1Z3 1444 aa14.18□□□□□ -0.14
PDGFC-209ENST00000513664 CEBPAP49715 358 aaPredicted RBP14.18□□□□□ -0.14
PDGFC-209ENST00000513664 CEP152O94986 1710 aa14.18□□□□□ -0.14
PDGFC-209ENST00000513664 PLPPR3Q6T4P5 718 aa14.17□□□□□ -0.14
PDGFC-209ENST00000513664 NUP155O75694 1391 aa14.17□□□□□ -0.14
PDGFC-209ENST00000513664 IQGAP3Q86VI3 1631 aa14.16□□□□□ -0.14
PDGFC-209ENST00000513664 SETD5Q9C0A6 1442 aa14.15□□□□□ -0.14
PDGFC-209ENST00000513664 SETD1BQ9UPS6 1966 aaKnown RBP14.15□□□□□ -0.14
PDGFC-209ENST00000513664 TET3O43151 1660 aa14.15□□□□□ -0.14
PDGFC-209ENST00000513664 PREX1Q8TCU6 1659 aa14.15□□□□□ -0.14
PDGFC-209ENST00000513664 RPRD2Q5VT52 1461 aaKnown RBP14.15□□□□□ -0.14
PDGFC-209ENST00000513664 EFCAB6Q5THR3 1501 aa14.15□□□□□ -0.14
PDGFC-209ENST00000513664 UHRF1BP1Q6BDS2 1440 aa14.14□□□□□ -0.15
PDGFC-209ENST00000513664 HRCP23327 699 aa14.12□□□□□ -0.15
PDGFC-209ENST00000513664 TRIM26Q12899 539 aaPredicted RBP14.12□□□□□ -0.15
PDGFC-209ENST00000513664 SPATA31D1Q6ZQQ2 1576 aa14.12□□□□□ -0.15
PDGFC-209ENST00000513664 ERVK-7P63135 1459 aa14.12□□□□□ -0.15
PDGFC-209ENST00000513664 TNRQ92752 1358 aa14.11□□□□□ -0.15
PDGFC-209ENST00000513664 TRIM52Q96A61 297 aa14.11□□□□□ -0.15
PDGFC-209ENST00000513664 FBXO31Q5XUX0 539 aaPredicted RBP14.1□□□□□ -0.15
PDGFC-209ENST00000513664 NLRP1Q9C000 1473 aa14.1□□□□□ -0.15
PDGFC-209ENST00000513664 LMTK3Q96Q04 1460 aa14.09□□□□□ -0.15
PDGFC-209ENST00000513664 RAB3GAP2Q9H2M9 1393 aa14.09□□□□□ -0.15
PDGFC-209ENST00000513664 MYO3AQ8NEV4 1616 aa14.08□□□□□ -0.15
PDGFC-209ENST00000513664 ZNF142P52746 1687 aaPredicted RBP14.07□□□□□ -0.16
PDGFC-209ENST00000513664 NOS1P29475 1434 aa14.07□□□□□ -0.16
PDGFC-209ENST00000513664 A2ML1A8K2U0 1454 aa14.06□□□□□ -0.16
PDGFC-209ENST00000513664 CEP170BQ9Y4F5 1589 aaPredicted RBP14.06□□□□□ -0.16
PDGFC-209ENST00000513664 SLC4A1APQ9BWU0 796 aaKnown RBP14.06□□□□□ -0.16
PDGFC-209ENST00000513664 SLC52A1Q9NWF4 448 aa14.06□□□□□ -0.16
PDGFC-209ENST00000513664 E9PCH4 1651 aa14.06□□□□□ -0.16
PDGFC-209ENST00000513664 THEMISQ8N1K5 641 aaPredicted RBP14.03□□□□□ -0.16
PDGFC-209ENST00000513664 CFAP65Q6ZU64 1925 aaKnown RBP14.02□□□□□ -0.16
PDGFC-209ENST00000513664 PKD2Q13563 968 aa14.02□□□□□ -0.17
PDGFC-209ENST00000513664 MPHOSPH9Q99550 1183 aa14.02□□□□□ -0.17
PDGFC-209ENST00000513664 KDM5AP29375 1690 aaKnown RBP14.01□□□□□ -0.17
PDGFC-209ENST00000513664 SYNMO15061 1565 aa14.01□□□□□ -0.17
PDGFC-209ENST00000513664 UGGT1Q9NYU2 1555 aa14.01□□□□□ -0.17
PDGFC-209ENST00000513664 PTPRTO14522 1441 aa14.01□□□□□ -0.17
PDGFC-209ENST00000513664 SPHKAPQ2M3C7 1700 aa14.01□□□□□ -0.17
PDGFC-209ENST00000513664 PLA2R1Q13018 1463 aa13.99□□□□□ -0.17
PDGFC-209ENST00000513664 IDI1Q13907 227 aa13.99□□□□□ -0.17
PDGFC-209ENST00000513664 STAG3Q9UJ98 1225 aa13.99□□□□□ -0.17
PDGFC-209ENST00000513664 PIK3C2BO00750 1634 aa13.99□□□□□ -0.17
PDGFC-209ENST00000513664 TRPM2O94759 1503 aa13.99□□□□□ -0.17
PDGFC-209ENST00000513664 HSPA2P54652 639 aa13.98□□□□□ -0.17
PDGFC-209ENST00000513664 DMRT2Q9Y5R5 561 aa13.98□□□□□ -0.17
PDGFC-209ENST00000513664 UBR1Q8IWV7 1749 aa13.98□□□□□ -0.17
PDGFC-209ENST00000513664 ADGRB3O60242 1522 aa13.96□□□□□ -0.17
PDGFC-209ENST00000513664 ANKLE2Q86XL3 938 aa13.94□□□□□ -0.18
PDGFC-209ENST00000513664 HDGFP51858 240 aaKnown RBP13.93□□□□□ -0.18
PDGFC-209ENST00000513664 EID1Q9Y6B2 187 aa13.93□□□□□ -0.18
PDGFC-209ENST00000513664 SLIT1O75093 1534 aa13.93□□□□□ -0.18
PDGFC-209ENST00000513664 TMEM131LA2VDJ0 1609 aa13.93□□□□□ -0.18
PDGFC-209ENST00000513664 CCDC144AA2RUR9 1427 aa13.92□□□□□ -0.18
PDGFC-209ENST00000513664 TMEM2Q9UHN6 1383 aa13.92□□□□□ -0.18
PDGFC-209ENST00000513664 ARHGAP23Q9P227 1491 aa13.92□□□□□ -0.18
PDGFC-209ENST00000513664 STRCQ7RTU9 1775 aa13.91□□□□□ -0.18
PDGFC-209ENST00000513664 CLTCL1P53675 1640 aa13.91□□□□□ -0.18
PDGFC-209ENST00000513664 POLR1AO95602 1720 aaPredicted RBP13.91□□□□□ -0.18
PDGFC-209ENST00000513664 CHGAP10645 457 aaKnown RBP13.9□□□□□ -0.18
PDGFC-209ENST00000513664 FOXD1Q16676 465 aa13.9□□□□□ -0.18
PDGFC-209ENST00000513664 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.9□□□□□ -0.18
PDGFC-209ENST00000513664 KIF1BO60333 1816 aa13.9□□□□□ -0.18
PDGFC-209ENST00000513664 MED14O60244 1454 aa13.89□□□□□ -0.19
PDGFC-209ENST00000513664 SCAF11Q99590 1463 aaKnown RBP13.89□□□□□ -0.19
PDGFC-209ENST00000513664 TXNDC2Q86VQ3 553 aa13.88□□□□□ -0.19
PDGFC-209ENST00000513664 NCKAP5LQ9HCH0 1330 aa13.88□□□□□ -0.19
PDGFC-209ENST00000513664 NEURL4Q96JN8 1562 aa13.88□□□□□ -0.19
PDGFC-209ENST00000513664 ANKRD30BQ9BXX2 1392 aa13.87□□□□□ -0.19
PDGFC-209ENST00000513664 PCGF6Q9BYE7 350 aa13.87□□□□□ -0.19
PDGFC-209ENST00000513664 ZFYVE9O95405 1425 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms