RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 RRP7BPQ9NSQ0 103 aa15□□□□□ -0.01
RNF4-221ENST00000513643 ERBINQ96RT1 1412 aa15□□□□□ -0.01
RNF4-221ENST00000513643 RNF17Q9BXT8 1623 aaKnown RBP14.99□□□□□ -0.01
RNF4-221ENST00000513643 ANKRD30AQ9BXX3 1397 aa14.99□□□□□ -0.01
RNF4-221ENST00000513643 PLPPR3Q6T4P5 718 aa14.99□□□□□ -0.01
RNF4-221ENST00000513643 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
RNF4-221ENST00000513643 EIF2AK4Q9P2K8 1649 aaKnown RBP14.99□□□□□ -0.01
RNF4-221ENST00000513643 FAM50AQ14320 339 aaKnown RBP14.98□□□□□ -0.01
RNF4-221ENST00000513643 MROH1Q8NDA8 1641 aa14.98□□□□□ -0.01
RNF4-221ENST00000513643 KDM5DQ9BY66 1539 aa14.97□□□□□ -0.01
RNF4-221ENST00000513643 HSPA2P54652 639 aa14.97□□□□□ -0.01
RNF4-221ENST00000513643 CHIC2Q9UKJ5 165 aa14.97□□□□□ -0.01
RNF4-221ENST00000513643 CLTCQ00610 1675 aaKnown RBP14.97□□□□□ -0.01
RNF4-221ENST00000513643 WASHC2CQ9Y4E1 1318 aa14.96□□□□□ -0.01
RNF4-221ENST00000513643 RRBP1Q9P2E9 1410 aaKnown RBP14.96□□□□□ -0.01
RNF4-221ENST00000513643 ROCK1Q13464 1354 aa14.96□□□□□ -0.02
RNF4-221ENST00000513643 UHRF1BP1Q6BDS2 1440 aa14.95□□□□□ -0.02
RNF4-221ENST00000513643 PREX1Q8TCU6 1659 aa14.95□□□□□ -0.02
RNF4-221ENST00000513643 PZPP20742 1482 aa14.95□□□□□ -0.02
RNF4-221ENST00000513643 ABCC3O15438 1527 aa14.94□□□□□ -0.02
RNF4-221ENST00000513643 FBXO31Q5XUX0 539 aaPredicted RBP14.93□□□□□ -0.02
RNF4-221ENST00000513643 PRDM15P57071 1507 aaPredicted RBP14.92□□□□□ -0.02
RNF4-221ENST00000513643 ARHGAP31Q2M1Z3 1444 aa14.92□□□□□ -0.02
RNF4-221ENST00000513643 VWDEQ8N2E2 1590 aa14.91□□□□□ -0.02
RNF4-221ENST00000513643 DEPDC5O75140 1603 aa14.91□□□□□ -0.02
RNF4-221ENST00000513643 ANKRD50Q9ULJ7 1429 aa14.91□□□□□ -0.02
RNF4-221ENST00000513643 LMTK2Q8IWU2 1503 aa14.89□□□□□ -0.03
RNF4-221ENST00000513643 TNRQ92752 1358 aa14.88□□□□□ -0.03
RNF4-221ENST00000513643 ZC3H13Q5T200 1668 aaKnown RBP14.87□□□□□ -0.03
RNF4-221ENST00000513643 SPATA31D1Q6ZQQ2 1576 aa14.86□□□□□ -0.03
RNF4-221ENST00000513643 A2ML1A8K2U0 1454 aa14.86□□□□□ -0.03
RNF4-221ENST00000513643 STRCQ7RTU9 1775 aa14.85□□□□□ -0.03
RNF4-221ENST00000513643 MYO3AQ8NEV4 1616 aa14.84□□□□□ -0.03
RNF4-221ENST00000513643 ZNF142P52746 1687 aaPredicted RBP14.84□□□□□ -0.03
RNF4-221ENST00000513643 ERVK-7P63135 1459 aa14.84□□□□□ -0.03
RNF4-221ENST00000513643 PLA2R1Q13018 1463 aa14.84□□□□□ -0.03
RNF4-221ENST00000513643 NLRP1Q9C000 1473 aa14.83□□□□□ -0.03
RNF4-221ENST00000513643 CEP170BQ9Y4F5 1589 aaPredicted RBP14.83□□□□□ -0.04
RNF4-221ENST00000513643 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.044e-7■■□□□ 12.7
RNF4-221ENST00000513643 DMRT2Q9Y5R5 561 aa14.83□□□□□ -0.04
RNF4-221ENST00000513643 KANK1Q14678 1352 aa14.83□□□□□ -0.04
RNF4-221ENST00000513643 PTPRTO14522 1441 aa14.83□□□□□ -0.04
RNF4-221ENST00000513643 CAMSAP1Q5T5Y3 1602 aa14.81□□□□□ -0.04
RNF4-221ENST00000513643 ITGAEP38570 1179 aa14.8□□□□□ -0.04
RNF4-221ENST00000513643 NOS1P29475 1434 aa14.8□□□□□ -0.04
RNF4-221ENST00000513643 CEP152O94986 1710 aa14.8□□□□□ -0.04
RNF4-221ENST00000513643 NAIPQ13075 1403 aa14.79□□□□□ -0.04
RNF4-221ENST00000513643 PKD2Q13563 968 aa14.79□□□□□ -0.04
RNF4-221ENST00000513643 UNC13BO14795 1591 aa14.78□□□□□ -0.04
RNF4-221ENST00000513643 EFCAB6Q5THR3 1501 aa14.77□□□□□ -0.04
RNF4-221ENST00000513643 RPRD2Q5VT52 1461 aaKnown RBP14.77□□□□□ -0.04
RNF4-221ENST00000513643 NCKAP5LQ9HCH0 1330 aa14.77□□□□□ -0.04
RNF4-221ENST00000513643 THEMISQ8N1K5 641 aaPredicted RBP14.77□□□□□ -0.05
RNF4-221ENST00000513643 HFM1A2PYH4 1435 aa14.76□□□□□ -0.05
RNF4-221ENST00000513643 UGGT1Q9NYU2 1555 aa14.75□□□□□ -0.05
RNF4-221ENST00000513643 IDI1Q13907 227 aa14.74□□□□□ -0.05
RNF4-221ENST00000513643 NUP155O75694 1391 aa14.73□□□□□ -0.05
RNF4-221ENST00000513643 SLC52A1Q9NWF4 448 aa14.73□□□□□ -0.05
RNF4-221ENST00000513643 MED14O60244 1454 aa14.73□□□□□ -0.05
RNF4-221ENST00000513643 TET3O43151 1660 aa14.72□□□□□ -0.05
RNF4-221ENST00000513643 ARHGAP23Q9P227 1491 aa14.72□□□□□ -0.05
RNF4-221ENST00000513643 ANKLE2Q86XL3 938 aa14.72□□□□□ -0.05
RNF4-221ENST00000513643 IQGAP3Q86VI3 1631 aa14.72□□□□□ -0.05
RNF4-221ENST00000513643 SYNMO15061 1565 aa14.72□□□□□ -0.05
RNF4-221ENST00000513643 CFAP65Q6ZU64 1925 aaKnown RBP14.71□□□□□ -0.05
RNF4-221ENST00000513643 NEURL4Q96JN8 1562 aa14.7□□□□□ -0.06
RNF4-221ENST00000513643 SLIT1O75093 1534 aa14.7□□□□□ -0.06
RNF4-221ENST00000513643 LTBP4Q8N2S1 1624 aa14.69□□□□□ -0.06
RNF4-221ENST00000513643 UBR1Q8IWV7 1749 aa14.69□□□□□ -0.06
RNF4-221ENST00000513643 LTKP29376 864 aa14.68□□□□□ -0.06
RNF4-221ENST00000513643 CERKQ8TCT0 537 aa14.68□□□□□ -0.06
RNF4-221ENST00000513643 KDM5AP29375 1690 aaKnown RBP14.68□□□□□ -0.06
RNF4-221ENST00000513643 TMEM2Q9UHN6 1383 aa14.67□□□□□ -0.06
RNF4-221ENST00000513643 GCC2Q8IWJ2 1684 aa14.67□□□□□ -0.06
RNF4-221ENST00000513643 E9PCH4 1651 aa14.66□□□□□ -0.06
RNF4-221ENST00000513643 ILDR1Q86SU0 546 aaPredicted RBP14.66□□□□□ -0.06
RNF4-221ENST00000513643 PIK3C2BO00750 1634 aa14.66□□□□□ -0.06
RNF4-221ENST00000513643 NPHP4O75161 1426 aaPredicted RBP14.65□□□□□ -0.06
RNF4-221ENST00000513643 FBXO41Q8TF61 875 aa14.64□□□□□ -0.07
RNF4-221ENST00000513643 ZNF335Q9H4Z2 1342 aaPredicted RBP14.64□□□□□ -0.07
RNF4-221ENST00000513643 TXNDC2Q86VQ3 553 aa14.63□□□□□ -0.07
RNF4-221ENST00000513643 SCAF11Q99590 1463 aaKnown RBP14.63□□□□□ -0.07
RNF4-221ENST00000513643 POLR1AO95602 1720 aaPredicted RBP14.62□□□□□ -0.07
RNF4-221ENST00000513643 ADGRB3O60242 1522 aa14.61□□□□□ -0.07
RNF4-221ENST00000513643 ZFYVE9O95405 1425 aa14.61□□□□□ -0.07
RNF4-221ENST00000513643 IQSEC2Q5JU85 1478 aa14.6□□□□□ -0.07
RNF4-221ENST00000513643 TMEM131LA2VDJ0 1609 aa14.59□□□□□ -0.07
RNF4-221ENST00000513643 STAG3Q9UJ98 1225 aa14.59□□□□□ -0.07
RNF4-221ENST00000513643 EID1Q9Y6B2 187 aa14.59□□□□□ -0.07
RNF4-221ENST00000513643 ACIN1Q9UKV3 1341 aaKnown RBP14.59□□□□□ -0.07
RNF4-221ENST00000513643 SETD5Q9C0A6 1442 aa14.58□□□□□ -0.07
RNF4-221ENST00000513643 HRCP23327 699 aa14.57□□□□□ -0.08
RNF4-221ENST00000513643 IQGAP1P46940 1657 aa14.57□□□□□ -0.08
RNF4-221ENST00000513643 TRIM52Q96A61 297 aa14.56□□□□□ -0.08
RNF4-221ENST00000513643 SLC4A1APQ9BWU0 796 aaKnown RBP14.56□□□□□ -0.08
RNF4-221ENST00000513643 MPHOSPH9Q99550 1183 aa14.55□□□□□ -0.08
RNF4-221ENST00000513643 RIMS2Q9UQ26 1411 aa14.55□□□□□ -0.08
RNF4-221ENST00000513643 TRPM2O94759 1503 aa14.55□□□□□ -0.08
RNF4-221ENST00000513643 PLEKHG1Q9ULL1 1385 aa14.54□□□□□ -0.08
RNF4-221ENST00000513643 CPS1P31327 1500 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms