RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 ANKRD50Q9ULJ7 1429 aa23.25■■□□□ 1.31
SQSTM1-214ENST00000512234 CLTCQ00610 1675 aaKnown RBP23.24■■□□□ 1.31
SQSTM1-214ENST00000512234 ROCK1Q13464 1354 aa23.24■■□□□ 1.31
SQSTM1-214ENST00000512234 ERBINQ96RT1 1412 aa23.24■■□□□ 1.31
SQSTM1-214ENST00000512234 WASHC2CQ9Y4E1 1318 aa23.24■■□□□ 1.31
SQSTM1-214ENST00000512234 MROH1Q8NDA8 1641 aa23.22■■□□□ 1.31
SQSTM1-214ENST00000512234 ZMYM3Q14202 1370 aa23.21■■□□□ 1.31
SQSTM1-214ENST00000512234 EIF2AK4Q9P2K8 1649 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-214ENST00000512234 FBXO31Q5XUX0 539 aaPredicted RBP23.19■■□□□ 1.3
SQSTM1-214ENST00000512234 RNF17Q9BXT8 1623 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-214ENST00000512234 NAIPQ13075 1403 aa23.17■■□□□ 1.3
SQSTM1-214ENST00000512234 C3P01024 1663 aa23.17■■□□□ 1.3
SQSTM1-214ENST00000512234 CNTLNQ9NXG0 1405 aa23.15■■□□□ 1.3
SQSTM1-214ENST00000512234 ABCC3O15438 1527 aa23.14■■□□□ 1.3
SQSTM1-214ENST00000512234 KDM5DQ9BY66 1539 aa23.14■■□□□ 1.3
SQSTM1-214ENST00000512234 PPP6R1Q9UPN7 881 aa23.14■■□□□ 1.3
SQSTM1-214ENST00000512234 CEP152O94986 1710 aa23.14■■□□□ 1.29
SQSTM1-214ENST00000512234 PRDM15P57071 1507 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-214ENST00000512234 DEPDC5O75140 1603 aa23.11■■□□□ 1.29
SQSTM1-214ENST00000512234 HFM1A2PYH4 1435 aa23.09■■□□□ 1.29
SQSTM1-214ENST00000512234 MROH2AA6NES4 1674 aa23.08■■□□□ 1.29
SQSTM1-214ENST00000512234 KANK1Q14678 1352 aa23.08■■□□□ 1.28
SQSTM1-214ENST00000512234 HSPA2P54652 639 aa23.08■■□□□ 1.28
SQSTM1-214ENST00000512234 NUP155O75694 1391 aa23.07■■□□□ 1.28
SQSTM1-214ENST00000512234 GCC2Q8IWJ2 1684 aa23.06■■□□□ 1.28
SQSTM1-214ENST00000512234 TRIM52Q96A61 297 aa23.05■■□□□ 1.28
SQSTM1-214ENST00000512234 CFAP65Q6ZU64 1925 aaKnown RBP23.05■■□□□ 1.28
SQSTM1-214ENST00000512234 VWDEQ8N2E2 1590 aa23.05■■□□□ 1.28
SQSTM1-214ENST00000512234 CAMSAP1Q5T5Y3 1602 aa23.03■■□□□ 1.28
SQSTM1-214ENST00000512234 UNC13BO14795 1591 aa23.03■■□□□ 1.28
SQSTM1-214ENST00000512234 PZPP20742 1482 aa23.02■■□□□ 1.28
SQSTM1-214ENST00000512234 NPATQ14207 1427 aa23.01■■□□□ 1.27
SQSTM1-214ENST00000512234 LMTK3Q96Q04 1460 aa23.01■■□□□ 1.27
SQSTM1-214ENST00000512234 ZC3H13Q5T200 1668 aaKnown RBP23.01■■□□□ 1.27
SQSTM1-214ENST00000512234 FAM135AQ9P2D6 1515 aa22.98■■□□□ 1.27
SQSTM1-214ENST00000512234 SETD5Q9C0A6 1442 aa22.98■■□□□ 1.27
SQSTM1-214ENST00000512234 TNRQ92752 1358 aa22.97■■□□□ 1.27
SQSTM1-214ENST00000512234 LMTK2Q8IWU2 1503 aa22.97■■□□□ 1.27
SQSTM1-214ENST00000512234 RAB3GAP2Q9H2M9 1393 aa22.96■■□□□ 1.27
SQSTM1-214ENST00000512234 ERVK-7P63135 1459 aa22.96■■□□□ 1.27
SQSTM1-214ENST00000512234 UHRF1BP1Q6BDS2 1440 aa22.95■■□□□ 1.27
SQSTM1-214ENST00000512234 EFCAB6Q5THR3 1501 aa22.94■■□□□ 1.26
SQSTM1-214ENST00000512234 IQGAP3Q86VI3 1631 aa22.94■■□□□ 1.26
SQSTM1-214ENST00000512234 FOXD1Q16676 465 aa22.94■■□□□ 1.26
SQSTM1-214ENST00000512234 PREX1Q8TCU6 1659 aa22.93■■□□□ 1.26
SQSTM1-214ENST00000512234 ARHGAP31Q2M1Z3 1444 aa22.93■■□□□ 1.26
SQSTM1-214ENST00000512234 SETD1BQ9UPS6 1966 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-214ENST00000512234 MYO3AQ8NEV4 1616 aa22.91■■□□□ 1.26
SQSTM1-214ENST00000512234 TET3O43151 1660 aa22.91■■□□□ 1.26
SQSTM1-214ENST00000512234 SPATA31D1Q6ZQQ2 1576 aa22.9■■□□□ 1.26
SQSTM1-214ENST00000512234 E9PCH4 1651 aa22.9■■□□□ 1.26
SQSTM1-214ENST00000512234 SLC4A1APQ9BWU0 796 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-214ENST00000512234 TRIM26Q12899 539 aaPredicted RBP22.89■■□□□ 1.26
SQSTM1-214ENST00000512234 PKD2Q13563 968 aa22.89■■□□□ 1.26
SQSTM1-214ENST00000512234 SYNMO15061 1565 aa22.86■■□□□ 1.25
SQSTM1-214ENST00000512234 IDI1Q13907 227 aa22.86■■□□□ 1.25
SQSTM1-214ENST00000512234 UGGT1Q9NYU2 1555 aa22.86■■□□□ 1.25
SQSTM1-214ENST00000512234 CEP170BQ9Y4F5 1589 aaPredicted RBP22.85■■□□□ 1.25
SQSTM1-214ENST00000512234 NOS1P29475 1434 aa22.85■■□□□ 1.25
SQSTM1-214ENST00000512234 MPHOSPH9Q99550 1183 aa22.85■■□□□ 1.25
SQSTM1-214ENST00000512234 A2ML1A8K2U0 1454 aa22.83■■□□□ 1.24
SQSTM1-214ENST00000512234 NCKAP5LQ9HCH0 1330 aa22.82■■□□□ 1.24
SQSTM1-214ENST00000512234 RPRD2Q5VT52 1461 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-214ENST00000512234 NLRP1Q9C000 1473 aa22.79■■□□□ 1.24
SQSTM1-214ENST00000512234 CHGAP10645 457 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-214ENST00000512234 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
SQSTM1-214ENST00000512234 ZNF142P52746 1687 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-214ENST00000512234 PIK3C2BO00750 1634 aa22.78■■□□□ 1.24
SQSTM1-214ENST00000512234 STAG3Q9UJ98 1225 aa22.77■■□□□ 1.24
SQSTM1-214ENST00000512234 PLA2R1Q13018 1463 aa22.77■■□□□ 1.24
SQSTM1-214ENST00000512234 PCGF6Q9BYE7 350 aa22.75■■□□□ 1.23
SQSTM1-214ENST00000512234 THEMISQ8N1K5 641 aaPredicted RBP22.74■■□□□ 1.23
SQSTM1-214ENST00000512234 STRCQ7RTU9 1775 aa22.73■■□□□ 1.23
SQSTM1-214ENST00000512234 PTPRTO14522 1441 aa22.73■■□□□ 1.23
SQSTM1-214ENST00000512234 SLC52A1Q9NWF4 448 aa22.73■■□□□ 1.23
SQSTM1-214ENST00000512234 UBR1Q8IWV7 1749 aa22.72■■□□□ 1.23
SQSTM1-214ENST00000512234 NUTM2DQ5VT03 806 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-214ENST00000512234 SPHKAPQ2M3C7 1700 aa22.71■■□□□ 1.23
SQSTM1-214ENST00000512234 LTKP29376 864 aa22.7■■□□□ 1.22
SQSTM1-214ENST00000512234 HRCP23327 699 aa22.69■■□□□ 1.22
SQSTM1-214ENST00000512234 CLTCL1P53675 1640 aa22.68■■□□□ 1.22
SQSTM1-214ENST00000512234 MYO5BQ9ULV0 1848 aa22.67■■□□□ 1.22
SQSTM1-214ENST00000512234 ADGRB3O60242 1522 aa22.65■■□□□ 1.22
SQSTM1-214ENST00000512234 TRPM2O94759 1503 aa22.65■■□□□ 1.22
SQSTM1-214ENST00000512234 TXNDC2Q86VQ3 553 aa22.65■■□□□ 1.22
SQSTM1-214ENST00000512234 ANKLE2Q86XL3 938 aa22.65■■□□□ 1.22
SQSTM1-214ENST00000512234 TMEM131LA2VDJ0 1609 aa22.64■■□□□ 1.21
SQSTM1-214ENST00000512234 TMEM2Q9UHN6 1383 aa22.64■■□□□ 1.21
SQSTM1-214ENST00000512234 ZNF326Q5BKZ1 582 aaKnown RBP22.62■■□□□ 1.21
SQSTM1-214ENST00000512234 NEURL4Q96JN8 1562 aa22.61■■□□□ 1.21
SQSTM1-214ENST00000512234 ARHGAP23Q9P227 1491 aa22.6■■□□□ 1.21
SQSTM1-214ENST00000512234 RGL3Q3MIN7 710 aa22.6■■□□□ 1.21
SQSTM1-214ENST00000512234 ACIN1Q9UKV3 1341 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-214ENST00000512234 SLIT1O75093 1534 aa22.58■■□□□ 1.21
SQSTM1-214ENST00000512234 RIMS2Q9UQ26 1411 aa22.58■■□□□ 1.2
SQSTM1-214ENST00000512234 EID1Q9Y6B2 187 aa22.57■■□□□ 1.2
SQSTM1-214ENST00000512234 CCDC144AA2RUR9 1427 aa22.57■■□□□ 1.2
SQSTM1-214ENST00000512234 ANKRD30BQ9BXX2 1392 aa22.57■■□□□ 1.2
SQSTM1-214ENST00000512234 SCAF11Q99590 1463 aaKnown RBP22.56■■□□□ 1.2
SQSTM1-214ENST00000512234 NPHP4O75161 1426 aaPredicted RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms