RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 MYOM3Q5VTT5 1437 aa24.1■■□□□ 1.45
TPM3-219ENST00000509409 MIA2Q96PC5 1412 aa24.09■■□□□ 1.45
TPM3-219ENST00000509409 TNRQ92752 1358 aa24.07■■□□□ 1.44
TPM3-219ENST00000509409 CEP170BQ9Y4F5 1589 aaPredicted RBP24.04■■□□□ 1.44
TPM3-219ENST00000509409 KDM5DQ9BY66 1539 aa24.04■■□□□ 1.44
TPM3-219ENST00000509409 MYO3AQ8NEV4 1616 aa24.03■■□□□ 1.44
TPM3-219ENST00000509409 A2ML1A8K2U0 1454 aa24.02■■□□□ 1.44
TPM3-219ENST00000509409 PLA2R1Q13018 1463 aa24.01■■□□□ 1.43
TPM3-219ENST00000509409 ZNF335Q9H4Z2 1342 aaPredicted RBP24.01■■□□□ 1.43
TPM3-219ENST00000509409 PZPP20742 1482 aa24■■□□□ 1.43
TPM3-219ENST00000509409 RRP7BPQ9NSQ0 103 aa24■■□□□ 1.43
TPM3-219ENST00000509409 THEMISQ8N1K5 641 aaPredicted RBP23.99■■□□□ 1.43
TPM3-219ENST00000509409 FAM135AQ9P2D6 1515 aa23.98■■□□□ 1.43
TPM3-219ENST00000509409 ZNF142P52746 1687 aaPredicted RBP23.97■■□□□ 1.43
TPM3-219ENST00000509409 TCOF1Q13428 1488 aaKnown RBP23.97■■□□□ 1.43
TPM3-219ENST00000509409 LTBP4Q8N2S1 1624 aa23.97■■□□□ 1.43
TPM3-219ENST00000509409 MAST1Q9Y2H9 1570 aa23.97■■□□□ 1.43
TPM3-219ENST00000509409 ANKLE2Q86XL3 938 aa23.96■■□□□ 1.43
TPM3-219ENST00000509409 DNMT1P26358 1616 aaKnown RBP23.94■■□□□ 1.42
TPM3-219ENST00000509409 ABCC5O15440 1437 aa23.93■■□□□ 1.42
TPM3-219ENST00000509409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.93■■□□□ 1.425e-9■■■■■ 27.9
TPM3-219ENST00000509409 CHIC2Q9UKJ5 165 aa23.93■■□□□ 1.42
TPM3-219ENST00000509409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.92■■□□□ 1.423e-7■■□□□ 11.8
TPM3-219ENST00000509409 KIF15Q9NS87 1388 aa23.92■■□□□ 1.42
TPM3-219ENST00000509409 DUOX2Q9NRD8 1548 aa23.9■■□□□ 1.42
TPM3-219ENST00000509409 UBAP1LF5GYI3 381 aa23.9■■□□□ 1.42
TPM3-219ENST00000509409 NLRP1Q9C000 1473 aa23.89■■□□□ 1.42
TPM3-219ENST00000509409 PTPN23Q9H3S7 1636 aa23.89■■□□□ 1.42
TPM3-219ENST00000509409 FGD6Q6ZV73 1430 aa23.89■■□□□ 1.41
TPM3-219ENST00000509409 ABCC3O15438 1527 aa23.89■■□□□ 1.41
TPM3-219ENST00000509409 IQSEC2Q5JU85 1478 aa23.88■■□□□ 1.41
TPM3-219ENST00000509409 DAPK1P53355 1430 aa23.87■■□□□ 1.41
TPM3-219ENST00000509409 RNF17Q9BXT8 1623 aaKnown RBP23.87■■□□□ 1.41
TPM3-219ENST00000509409 FAM50AQ14320 339 aaKnown RBP23.86■■□□□ 1.41
TPM3-219ENST00000509409 UGGT1Q9NYU2 1555 aa23.86■■□□□ 1.41
TPM3-219ENST00000509409 EIF2AK4Q9P2K8 1649 aaKnown RBP23.85■■□□□ 1.41
TPM3-219ENST00000509409 SHANK2Q9UPX8 1470 aa23.85■■□□□ 1.41
TPM3-219ENST00000509409 ANKRD30AQ9BXX3 1397 aa23.84■■□□□ 1.41
TPM3-219ENST00000509409 ERBINQ96RT1 1412 aa23.83■■□□□ 1.4
TPM3-219ENST00000509409 KANK1Q14678 1352 aa23.82■■□□□ 1.4
TPM3-219ENST00000509409 ERVK-7P63135 1459 aa23.81■■□□□ 1.4
TPM3-219ENST00000509409 ZC3H13Q5T200 1668 aaKnown RBP23.79■■□□□ 1.4
TPM3-219ENST00000509409 NPHP4O75161 1426 aaPredicted RBP23.79■■□□□ 1.4
TPM3-219ENST00000509409 SPATA31D1Q6ZQQ2 1576 aa23.78■■□□□ 1.4
TPM3-219ENST00000509409 MROH1Q8NDA8 1641 aa23.78■■□□□ 1.4
TPM3-219ENST00000509409 DISP3Q9P2K9 1392 aa23.78■■□□□ 1.4
TPM3-219ENST00000509409 STAG3Q9UJ98 1225 aa23.77■■□□□ 1.4
TPM3-219ENST00000509409 SCAF1Q9H7N4 1312 aaKnown RBP23.77■■□□□ 1.4
TPM3-219ENST00000509409 NEURL4Q96JN8 1562 aa23.75■■□□□ 1.39
TPM3-219ENST00000509409 CEP152O94986 1710 aa23.74■■□□□ 1.39
TPM3-219ENST00000509409 TOM1O60784 492 aa23.74■■□□□ 1.39
TPM3-219ENST00000509409 TXNDC2Q86VQ3 553 aa23.74■■□□□ 1.39
TPM3-219ENST00000509409 ARHGAP31Q2M1Z3 1444 aa23.74■■□□□ 1.39
TPM3-219ENST00000509409 CROCC2H7BZ55 1655 aa23.73■■□□□ 1.39
TPM3-219ENST00000509409 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
TPM3-219ENST00000509409 CFAP65Q6ZU64 1925 aaKnown RBP23.73■■□□□ 1.39
TPM3-219ENST00000509409 PIP4K2BP78356 416 aa23.73■■□□□ 1.39
TPM3-219ENST00000509409 EID1Q9Y6B2 187 aa23.72■■□□□ 1.39
TPM3-219ENST00000509409 MED14O60244 1454 aa23.72■■□□□ 1.39
TPM3-219ENST00000509409 PRDM15P57071 1507 aaPredicted RBP23.71■■□□□ 1.39
TPM3-219ENST00000509409 CPS1P31327 1500 aa23.7■■□□□ 1.38
TPM3-219ENST00000509409 LTKP29376 864 aa23.69■■□□□ 1.38
TPM3-219ENST00000509409 DEPDC5O75140 1603 aa23.68■■□□□ 1.38
TPM3-219ENST00000509409 IDI1Q13907 227 aa23.67■■□□□ 1.38
TPM3-219ENST00000509409 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
TPM3-219ENST00000509409 ADGRL2O95490 1459 aa23.64■■□□□ 1.38
TPM3-219ENST00000509409 VWDEQ8N2E2 1590 aa23.64■■□□□ 1.37
TPM3-219ENST00000509409 SCAF11Q99590 1463 aaKnown RBP23.63■■□□□ 1.37
TPM3-219ENST00000509409 ANKRD50Q9ULJ7 1429 aa23.63■■□□□ 1.37
TPM3-219ENST00000509409 IQGAP1P46940 1657 aa23.62■■□□□ 1.37
TPM3-219ENST00000509409 LMTK2Q8IWU2 1503 aa23.61■■□□□ 1.37
TPM3-219ENST00000509409 ITGAEP38570 1179 aa23.61■■□□□ 1.37
TPM3-219ENST00000509409 UBR1Q8IWV7 1749 aa23.61■■□□□ 1.37
TPM3-219ENST00000509409 HSPA1LP34931 641 aa23.6■■□□□ 1.37
TPM3-219ENST00000509409 ILDR2Q71H61 639 aa23.6■■□□□ 1.37
TPM3-219ENST00000509409 TMEM2Q9UHN6 1383 aa23.6■■□□□ 1.37
TPM3-219ENST00000509409 SLC52A1Q9NWF4 448 aa23.59■■□□□ 1.37
TPM3-219ENST00000509409 ARHGAP23Q9P227 1491 aa23.58■■□□□ 1.37
TPM3-219ENST00000509409 SLIT1O75093 1534 aa23.58■■□□□ 1.36
TPM3-219ENST00000509409 BCANQ96GW7 911 aa23.57■■□□□ 1.36
TPM3-219ENST00000509409 PIK3C2BO00750 1634 aa23.55■■□□□ 1.36
TPM3-219ENST00000509409 NOS1P29475 1434 aa23.54■■□□□ 1.36
TPM3-219ENST00000509409 SENP3Q9H4L4 574 aaPredicted RBP23.54■■□□□ 1.36
TPM3-219ENST00000509409 LRRC7Q96NW7 1537 aa23.54■■□□□ 1.36
TPM3-219ENST00000509409 SLC26A8Q96RN1 970 aa23.52■■□□□ 1.36
TPM3-219ENST00000509409 EFCAB6Q5THR3 1501 aa23.52■■□□□ 1.36
TPM3-219ENST00000509409 CHGAP10645 457 aaKnown RBP23.51■■□□□ 1.35
TPM3-219ENST00000509409 ROCK1Q13464 1354 aa23.5■■□□□ 1.35
TPM3-219ENST00000509409 HDGFP51858 240 aaKnown RBP23.49■■□□□ 1.35
TPM3-219ENST00000509409 SYNMO15061 1565 aa23.48■■□□□ 1.35
TPM3-219ENST00000509409 PPP1R15AO75807 674 aaPredicted RBP23.47■■□□□ 1.35
TPM3-219ENST00000509409 KCNA6P17658 529 aa23.47■■□□□ 1.35
TPM3-219ENST00000509409 RPRD2Q5VT52 1461 aaKnown RBP23.47■■□□□ 1.35
TPM3-219ENST00000509409 STRCP1A6NGW2 1772 aa23.46■■□□□ 1.35
TPM3-219ENST00000509409 SOCS7O14512 581 aa23.45■■□□□ 1.34
TPM3-219ENST00000509409 PROSER2Q86WR7 435 aaPredicted RBP23.45■■□□□ 1.34
TPM3-219ENST00000509409 NUP155O75694 1391 aa23.44■■□□□ 1.34
TPM3-219ENST00000509409 ADGRB3O60242 1522 aa23.43■■□□□ 1.34
TPM3-219ENST00000509409 RBM33Q96EV2 1170 aaKnown RBP23.41■■□□□ 1.34
TPM3-219ENST00000509409 KDM5AP29375 1690 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms