RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 ATP7AQ04656 1500 aa11.46□□□□□ -0.57
TOPBP1-207ENST00000509162 MYOM3Q5VTT5 1437 aa11.46□□□□□ -0.57
TOPBP1-207ENST00000509162 FKBP8Q14318 412 aa11.46□□□□□ -0.57
TOPBP1-207ENST00000509162 CROCC2H7BZ55 1655 aa11.46□□□□□ -0.58
TOPBP1-207ENST00000509162 AFAP1Q8N556 730 aa11.45□□□□□ -0.58
TOPBP1-207ENST00000509162 SSUH2Q9Y2M2 353 aa11.45□□□□□ -0.58
TOPBP1-207ENST00000509162 C9orf84Q5VXU9 1444 aa11.44□□□□□ -0.58
TOPBP1-207ENST00000509162 PITPNM1O00562 1244 aa11.44□□□□□ -0.58
TOPBP1-207ENST00000509162 PTPN23Q9H3S7 1636 aa11.44□□□□□ -0.58
TOPBP1-207ENST00000509162 TCOF1Q13428 1488 aaKnown RBP11.44□□□□□ -0.58
TOPBP1-207ENST00000509162 PLEKHH2Q8IVE3 1493 aa11.44□□□□□ -0.58
TOPBP1-207ENST00000509162 ZNF692Q9BU19 519 aaPredicted RBP11.43□□□□□ -0.58
TOPBP1-207ENST00000509162 CCDC141Q6ZP82 1450 aa11.43□□□□□ -0.58
TOPBP1-207ENST00000509162 FGD6Q6ZV73 1430 aa11.43□□□□□ -0.58
TOPBP1-207ENST00000509162 MAST1Q9Y2H9 1570 aa11.42□□□□□ -0.58
TOPBP1-207ENST00000509162 RIMS1Q86UR5 1692 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 ATP10AO60312 1499 aa11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 HNRNPMP52272 730 aaKnown RBP eCLIP11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 CFDP1Q9UEE9 299 aaPredicted RBP11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 ZNF777Q9ULD5 760 aaPredicted RBP11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 MIA2Q96PC5 1412 aa11.41□□□□□ -0.58
TOPBP1-207ENST00000509162 AGLP35573 1532 aa11.4□□□□□ -0.58
TOPBP1-207ENST00000509162 DNMT1P26358 1616 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-207ENST00000509162 FER1L4A9Z1Z3 1794 aa11.39□□□□□ -0.59
TOPBP1-207ENST00000509162 ABCC5O15440 1437 aa11.38□□□□□ -0.59
TOPBP1-207ENST00000509162 MROH1Q8NDA8 1641 aa11.38□□□□□ -0.59
TOPBP1-207ENST00000509162 PTPRMP28827 1452 aa11.37□□□□□ -0.59
TOPBP1-207ENST00000509162 SHANK2Q9UPX8 1470 aa11.37□□□□□ -0.59
TOPBP1-207ENST00000509162 PTPRKQ15262 1439 aa11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 PIP4P2Q8N4L2 257 aa11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 SPDYE1Q8NFV5 336 aaPredicted RBP11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 A2MP01023 1474 aa11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 RTEL1-TNFRSF6BF6WH68 1400 aa11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 DAPK1P53355 1430 aa11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 SPAG9O60271 1321 aaKnown RBP11.35□□□□□ -0.59
TOPBP1-207ENST00000509162 FXR2P51116 673 aaKnown RBP eCLIP11.33□□□□□ -0.6
TOPBP1-207ENST00000509162 PPARGC1BQ86YN6 1023 aaKnown RBP11.33□□□□□ -0.6
TOPBP1-207ENST00000509162 PLSCR2Q9NRY7 297 aa11.33□□□□□ -0.6
TOPBP1-207ENST00000509162 RNF17Q9BXT8 1623 aaKnown RBP11.33□□□□□ -0.6
TOPBP1-207ENST00000509162 C3P01024 1663 aa11.31□□□□□ -0.6
TOPBP1-207ENST00000509162 ADGRL2O95490 1459 aa11.31□□□□□ -0.6
TOPBP1-207ENST00000509162 EIF2AK4Q9P2K8 1649 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-207ENST00000509162 CLTCQ00610 1675 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-207ENST00000509162 DEPDC5O75140 1603 aa11.29□□□□□ -0.6
TOPBP1-207ENST00000509162 MROH2AA6NES4 1674 aa11.29□□□□□ -0.6
TOPBP1-207ENST00000509162 RRBP1Q9P2E9 1410 aaKnown RBP11.28□□□□□ -0.6
TOPBP1-207ENST00000509162 LMTK3Q96Q04 1460 aa11.28□□□□□ -0.6
TOPBP1-207ENST00000509162 PRDM15P57071 1507 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-207ENST00000509162 MLECQ14165 292 aa11.27□□□□□ -0.61
TOPBP1-207ENST00000509162 ARID4BQ4LE39 1312 aaPredicted RBP11.27□□□□□ -0.61
TOPBP1-207ENST00000509162 DHX29Q7Z478 1369 aaKnown RBP11.27□□□□□ -0.61
TOPBP1-207ENST00000509162 ABCC3O15438 1527 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 DUOX2Q9NRD8 1548 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 VWDEQ8N2E2 1590 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 CLEC11AQ9Y240 323 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 CEP152O94986 1710 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 KIF15Q9NS87 1388 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 KDM5DQ9BY66 1539 aa11.25□□□□□ -0.61
TOPBP1-207ENST00000509162 NCOA1Q15788 1441 aa11.24□□□□□ -0.61
TOPBP1-207ENST00000509162 ERBINQ96RT1 1412 aa11.23□□□□□ -0.61
TOPBP1-207ENST00000509162 MYO3AQ8NEV4 1616 aa11.23□□□□□ -0.61
TOPBP1-207ENST00000509162 ZC3H13Q5T200 1668 aaKnown RBP11.22□□□□□ -0.61
TOPBP1-207ENST00000509162 PREX1Q8TCU6 1659 aa11.22□□□□□ -0.61
TOPBP1-207ENST00000509162 FAM135AQ9P2D6 1515 aa11.22□□□□□ -0.61
TOPBP1-207ENST00000509162 CAMSAP1Q5T5Y3 1602 aa11.21□□□□□ -0.61
TOPBP1-207ENST00000509162 UNC13BO14795 1591 aa11.21□□□□□ -0.61
TOPBP1-207ENST00000509162 CEBPAP49715 358 aaPredicted RBP11.21□□□□□ -0.61
TOPBP1-207ENST00000509162 MYT1LQ9UL68 1186 aa11.21□□□□□ -0.61
TOPBP1-207ENST00000509162 ZNF142P52746 1687 aaPredicted RBP11.2□□□□□ -0.62
TOPBP1-207ENST00000509162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.2□□□□□ -0.62
TOPBP1-207ENST00000509162 GCC2Q8IWJ2 1684 aa11.2□□□□□ -0.62
TOPBP1-207ENST00000509162 CNTLNQ9NXG0 1405 aa11.19□□□□□ -0.62
TOPBP1-207ENST00000509162 RSPH4AQ5TD94 716 aa11.19□□□□□ -0.62
TOPBP1-207ENST00000509162 FAM50AQ14320 339 aaKnown RBP11.18□□□□□ -0.62
TOPBP1-207ENST00000509162 CHIC2Q9UKJ5 165 aa11.18□□□□□ -0.62
TOPBP1-207ENST00000509162 LMTK2Q8IWU2 1503 aa11.18□□□□□ -0.62
TOPBP1-207ENST00000509162 PZPP20742 1482 aa11.18□□□□□ -0.62
TOPBP1-207ENST00000509162 SPATA31D1Q6ZQQ2 1576 aa11.17□□□□□ -0.62
TOPBP1-207ENST00000509162 ROCK1Q13464 1354 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 EFCAB6Q5THR3 1501 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 KIF3BO15066 747 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 RRP7BPQ9NSQ0 103 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 ZMYM3Q14202 1370 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 ANKRD30AQ9BXX3 1397 aa11.16□□□□□ -0.62
TOPBP1-207ENST00000509162 ERVK-7P63135 1459 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 SPDYE4A6NLX3 237 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 TSPY4P0CV99 314 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 TSPY10P0CW01 314 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 GGT6Q6P531 493 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 NPATQ14207 1427 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 ANKRD50Q9ULJ7 1429 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 SYNMO15061 1565 aa11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 CEP170BQ9Y4F5 1589 aaPredicted RBP11.15□□□□□ -0.62
TOPBP1-207ENST00000509162 IQGAP3Q86VI3 1631 aa11.14□□□□□ -0.63
TOPBP1-207ENST00000509162 STRCQ7RTU9 1775 aa11.14□□□□□ -0.63
TOPBP1-207ENST00000509162 PRKAR2AP13861 404 aaKnown RBP11.14□□□□□ -0.63
TOPBP1-207ENST00000509162 NAIPQ13075 1403 aa11.13□□□□□ -0.63
TOPBP1-207ENST00000509162 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
TOPBP1-207ENST00000509162 TET3O43151 1660 aa11.11□□□□□ -0.63
TOPBP1-207ENST00000509162 HSPA2P54652 639 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms