RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 MEX3CQ5U5Q3 659 aaKnown RBP12.06□□□□□ -0.48
VCAN-207ENST00000507162 POLR1AO95602 1720 aaPredicted RBP12.06□□□□□ -0.48
VCAN-207ENST00000507162 FAM135BQ49AJ0 1406 aa12.05□□□□□ -0.48
VCAN-207ENST00000507162 SAMD9LQ8IVG5 1584 aa12.05□□□□□ -0.48
VCAN-207ENST00000507162 FMN1Q68DA7 1419 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 ITSN2Q9NZM3 1697 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 MED14O60244 1454 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 KIF3BO15066 747 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 FAM135AQ9P2D6 1515 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 WASHC2CQ9Y4E1 1318 aa12.04□□□□□ -0.48
VCAN-207ENST00000507162 RNF17Q9BXT8 1623 aaKnown RBP12.04□□□□□ -0.48
VCAN-207ENST00000507162 UBTFP17480 764 aaKnown RBP12.03□□□□□ -0.48
VCAN-207ENST00000507162 RXRBP28702 533 aa12.03□□□□□ -0.48
VCAN-207ENST00000507162 ZNF772Q68DY9 489 aaPredicted RBP12.03□□□□□ -0.48
VCAN-207ENST00000507162 MIA2Q96PC5 1412 aa12.03□□□□□ -0.48
VCAN-207ENST00000507162 STRCP1A6NGW2 1772 aa12.02□□□□□ -0.48
VCAN-207ENST00000507162 RBM33Q96EV2 1170 aaKnown RBP12.02□□□□□ -0.49
VCAN-207ENST00000507162 UGGT1Q9NYU2 1555 aa12.01□□□□□ -0.49
VCAN-207ENST00000507162 CFDP1Q9UEE9 299 aaPredicted RBP12□□□□□ -0.49
VCAN-207ENST00000507162 TXNDC2Q86VQ3 553 aa11.99□□□□□ -0.49
VCAN-207ENST00000507162 PROSER2Q86WR7 435 aaPredicted RBP11.99□□□□□ -0.49
VCAN-207ENST00000507162 ATP7AQ04656 1500 aa11.99□□□□□ -0.49
VCAN-207ENST00000507162 IQGAP1P46940 1657 aa11.98□□□□□ -0.49
VCAN-207ENST00000507162 PREX2Q70Z35 1606 aa11.98□□□□□ -0.49
VCAN-207ENST00000507162 SYCP2Q9BX26 1530 aa11.98□□□□□ -0.49
VCAN-207ENST00000507162 JCADQ9P266 1359 aa11.98□□□□□ -0.49
VCAN-207ENST00000507162 ZRANB1Q9UGI0 708 aa11.97□□□□□ -0.49
VCAN-207ENST00000507162 DEPDC5O75140 1603 aa11.97□□□□□ -0.49
VCAN-207ENST00000507162 NLRP1Q9C000 1473 aa11.96□□□□□ -0.49
VCAN-207ENST00000507162 TMEM94Q12767 1356 aa11.96□□□□□ -0.49
VCAN-207ENST00000507162 NUTM2BA6NNL0 878 aaPredicted RBP11.96□□□□□ -0.49
VCAN-207ENST00000507162 NUTM2EB1AL46 878 aaPredicted RBP11.96□□□□□ -0.49
VCAN-207ENST00000507162 LTKP29376 864 aa11.96□□□□□ -0.49
VCAN-207ENST00000507162 NUTM2DQ5VT03 806 aaPredicted RBP11.96□□□□□ -0.49
VCAN-207ENST00000507162 NUTM2AQ8IVF1 878 aaPredicted RBP11.96□□□□□ -0.49
VCAN-207ENST00000507162 PLXNC1O60486 1568 aa11.96□□□□□ -0.5
VCAN-207ENST00000507162 PZPP20742 1482 aa11.95□□□□□ -0.5
VCAN-207ENST00000507162 DHX29Q7Z478 1369 aaKnown RBP11.95□□□□□ -0.5
VCAN-207ENST00000507162 SLAIN2Q9P270 581 aa11.95□□□□□ -0.5
VCAN-207ENST00000507162 SYNMO15061 1565 aa11.95□□□□□ -0.5
VCAN-207ENST00000507162 EID1Q9Y6B2 187 aa11.94□□□□□ -0.5
VCAN-207ENST00000507162 KIAA1107Q9UPP5 1409 aa11.94□□□□□ -0.5
VCAN-207ENST00000507162 ZNF644Q9H582 1327 aaPredicted RBP11.93□□□□□ -0.5
VCAN-207ENST00000507162 KCNA6P17658 529 aa11.92□□□□□ -0.5
VCAN-207ENST00000507162 GPATCH8Q9UKJ3 1502 aaKnown RBP11.91□□□□□ -0.5
VCAN-207ENST00000507162 SPATA31A6Q5VVP1 1343 aa11.91□□□□□ -0.5
VCAN-207ENST00000507162 ROBO1Q9Y6N7 1651 aa11.91□□□□□ -0.5
VCAN-207ENST00000507162 ARHGAP35Q9NRY4 1499 aa11.91□□□□□ -0.5
VCAN-207ENST00000507162 CDC42BPAQ5VT25 1732 aa11.91□□□□□ -0.5
VCAN-207ENST00000507162 PLEKHH2Q8IVE3 1493 aa11.9□□□□□ -0.5
VCAN-207ENST00000507162 KDM5DQ9BY66 1539 aa11.9□□□□□ -0.5
VCAN-207ENST00000507162 CCNB3Q8WWL7 1395 aa11.9□□□□□ -0.5
VCAN-207ENST00000507162 SCAF11Q99590 1463 aaKnown RBP11.89□□□□□ -0.51
VCAN-207ENST00000507162 INO80Q9ULG1 1556 aaPredicted RBP11.89□□□□□ -0.51
VCAN-207ENST00000507162 SLC26A8Q96RN1 970 aa11.89□□□□□ -0.51
VCAN-207ENST00000507162 QTRT2Q9H974 415 aaKnown RBP11.89□□□□□ -0.51
VCAN-207ENST00000507162 EEA1Q15075 1411 aa11.88□□□□□ -0.51
VCAN-207ENST00000507162 BCANQ96GW7 911 aa11.88□□□□□ -0.51
VCAN-207ENST00000507162 STAG3Q9UJ98 1225 aa11.88□□□□□ -0.51
VCAN-207ENST00000507162 XIRP1Q702N8 1843 aaKnown RBP11.88□□□□□ -0.51
VCAN-207ENST00000507162 AFF2P51816 1311 aa11.87□□□□□ -0.51
VCAN-207ENST00000507162 LRP6O75581 1613 aa11.87□□□□□ -0.51
VCAN-207ENST00000507162 MSH6P52701 1360 aa11.87□□□□□ -0.51
VCAN-207ENST00000507162 ADGBQ8N7X0 1667 aa11.87□□□□□ -0.51
VCAN-207ENST00000507162 PHLPP1O60346 1717 aa11.86□□□□□ -0.51
VCAN-207ENST00000507162 LRRIQ1Q96JM4 1722 aa11.86□□□□□ -0.51
VCAN-207ENST00000507162 CCDC18Q5T9S5 1454 aa11.85□□□□□ -0.51
VCAN-207ENST00000507162 RBM6P78332 1123 aaKnown RBP11.85□□□□□ -0.51
VCAN-207ENST00000507162 ZC3H13Q5T200 1668 aaKnown RBP11.84□□□□□ -0.51
VCAN-207ENST00000507162 LRRC9Q6ZRR7 1453 aa11.84□□□□□ -0.51
VCAN-207ENST00000507162 C14orf37Q86TY3 774 aa11.84□□□□□ -0.51
VCAN-207ENST00000507162 RTEL1-TNFRSF6BF6WH68 1400 aa11.84□□□□□ -0.51
VCAN-207ENST00000507162 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
VCAN-207ENST00000507162 MAPK8IP2Q13387 824 aaPredicted RBP11.83□□□□□ -0.52
VCAN-207ENST00000507162 C8orf37Q96NL8 207 aa11.83□□□□□ -0.52
VCAN-207ENST00000507162 CASKIN1Q8WXD9 1431 aa11.83□□□□□ -0.52
VCAN-207ENST00000507162 CFAP65Q6ZU64 1925 aaKnown RBP11.82□□□□□ -0.52
VCAN-207ENST00000507162 SETBP1Q9Y6X0 1596 aa11.81□□□□□ -0.52
VCAN-207ENST00000507162 FGD6Q6ZV73 1430 aa11.81□□□□□ -0.52
VCAN-207ENST00000507162 NCOA2Q15596 1464 aa11.81□□□□□ -0.52
VCAN-207ENST00000507162 RGS12O14924 1447 aa11.8□□□□□ -0.52
VCAN-207ENST00000507162 TSPY4P0CV99 314 aa11.8□□□□□ -0.52
VCAN-207ENST00000507162 TSPY10P0CW01 314 aa11.8□□□□□ -0.52
VCAN-207ENST00000507162 NGLY1Q96IV0 654 aa11.8□□□□□ -0.52
VCAN-207ENST00000507162 MBD5Q9P267 1494 aa11.8□□□□□ -0.52
VCAN-207ENST00000507162 ATAD2Q6PL18 1390 aa11.79□□□□□ -0.52
VCAN-207ENST00000507162 ERVK-7P63135 1459 aa11.79□□□□□ -0.52
VCAN-207ENST00000507162 ARHGAP23Q9P227 1491 aa11.78□□□□□ -0.52
VCAN-207ENST00000507162 MAP3K1Q13233 1512 aa11.78□□□□□ -0.52
VCAN-207ENST00000507162 ATF3P18847 181 aa11.78□□□□□ -0.52
VCAN-207ENST00000507162 TMEM2Q9UHN6 1383 aa11.78□□□□□ -0.52
VCAN-207ENST00000507162 COL16A1Q07092 1604 aaPredicted RBP11.77□□□□□ -0.53
VCAN-207ENST00000507162 MTUS2Q5JR59 1369 aa11.77□□□□□ -0.53
VCAN-207ENST00000507162 SLIT1O75093 1534 aa11.76□□□□□ -0.53
VCAN-207ENST00000507162 PRDM15P57071 1507 aaPredicted RBP11.76□□□□□ -0.53
VCAN-207ENST00000507162 RSPH4AQ5TD94 716 aa11.76□□□□□ -0.53
VCAN-207ENST00000507162 UBR1Q8IWV7 1749 aa11.76□□□□□ -0.53
VCAN-207ENST00000507162 ADAMTS2O95450 1211 aa11.75□□□□□ -0.53
VCAN-207ENST00000507162 CADPS2Q86UW7 1296 aa11.75□□□□□ -0.53
VCAN-207ENST00000507162 CCDC125Q86Z20 511 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms