RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 NPATQ14207 1427 aa23.99■■□□□ 1.43
MED28-204ENST00000506409 PPARGC1BQ86YN6 1023 aaKnown RBP23.98■■□□□ 1.43
MED28-204ENST00000506409 FAM135AQ9P2D6 1515 aa23.98■■□□□ 1.43
MED28-204ENST00000506409 EIF2AK4Q9P2K8 1649 aaKnown RBP23.98■■□□□ 1.43
MED28-204ENST00000506409 KDM5DQ9BY66 1539 aa23.97■■□□□ 1.43
MED28-204ENST00000506409 RRP7BPQ9NSQ0 103 aa23.96■■□□□ 1.43
MED28-204ENST00000506409 RNF17Q9BXT8 1623 aaKnown RBP23.95■■□□□ 1.43
MED28-204ENST00000506409 WASHC2CQ9Y4E1 1318 aa23.95■■□□□ 1.42
MED28-204ENST00000506409 CHIC2Q9UKJ5 165 aa23.95■■□□□ 1.42
MED28-204ENST00000506409 PTPRKQ15262 1439 aa23.94■■□□□ 1.42
MED28-204ENST00000506409 ANKRD30AQ9BXX3 1397 aa23.94■■□□□ 1.42
MED28-204ENST00000506409 ERBINQ96RT1 1412 aa23.93■■□□□ 1.42
MED28-204ENST00000506409 NCOA1Q15788 1441 aa23.89■■□□□ 1.41
MED28-204ENST00000506409 ADGRL2O95490 1459 aa23.88■■□□□ 1.41
MED28-204ENST00000506409 MROH1Q8NDA8 1641 aa23.88■■□□□ 1.41
MED28-204ENST00000506409 PZPP20742 1482 aa23.87■■□□□ 1.41
MED28-204ENST00000506409 ABCC3O15438 1527 aa23.87■■□□□ 1.41
MED28-204ENST00000506409 ZC3H13Q5T200 1668 aaKnown RBP23.86■■□□□ 1.41
MED28-204ENST00000506409 MYO3AQ8NEV4 1616 aa23.85■■□□□ 1.41
MED28-204ENST00000506409 FBXO31Q5XUX0 539 aaPredicted RBP23.83■■□□□ 1.41
MED28-204ENST00000506409 PRDM15P57071 1507 aaPredicted RBP23.83■■□□□ 1.41
MED28-204ENST00000506409 TNRQ92752 1358 aa23.81■■□□□ 1.4
MED28-204ENST00000506409 ZNF142P52746 1687 aaPredicted RBP23.81■■□□□ 1.4
MED28-204ENST00000506409 CEP170BQ9Y4F5 1589 aaPredicted RBP23.81■■□□□ 1.4
MED28-204ENST00000506409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.8■■□□□ 1.4
MED28-204ENST00000506409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.8■■□□□ 1.4
MED28-204ENST00000506409 DEPDC5O75140 1603 aa23.8■■□□□ 1.4
MED28-204ENST00000506409 CEP152O94986 1710 aa23.79■■□□□ 1.4
MED28-204ENST00000506409 STRCQ7RTU9 1775 aa23.79■■□□□ 1.4
MED28-204ENST00000506409 KANK1Q14678 1352 aa23.78■■□□□ 1.4
MED28-204ENST00000506409 CAMSAP1Q5T5Y3 1602 aa23.77■■□□□ 1.4
MED28-204ENST00000506409 ANKRD50Q9ULJ7 1429 aa23.77■■□□□ 1.4
MED28-204ENST00000506409 ITGAEP38570 1179 aa23.76■■□□□ 1.39
MED28-204ENST00000506409 DMRT2Q9Y5R5 561 aa23.76■■□□□ 1.39
MED28-204ENST00000506409 A2ML1A8K2U0 1454 aa23.75■■□□□ 1.39
MED28-204ENST00000506409 ROCK1Q13464 1354 aa23.75■■□□□ 1.39
MED28-204ENST00000506409 RRBP1Q9P2E9 1410 aaKnown RBP23.74■■□□□ 1.39
MED28-204ENST00000506409 ERVK-7P63135 1459 aa23.72■■□□□ 1.39
MED28-204ENST00000506409 SPATA31D1Q6ZQQ2 1576 aa23.72■■□□□ 1.39
MED28-204ENST00000506409 NLRP1Q9C000 1473 aa23.71■■□□□ 1.39
MED28-204ENST00000506409 PLA2R1Q13018 1463 aa23.7■■□□□ 1.38
MED28-204ENST00000506409 ARHGAP31Q2M1Z3 1444 aa23.7■■□□□ 1.38
MED28-204ENST00000506409 VWDEQ8N2E2 1590 aa23.69■■□□□ 1.38
MED28-204ENST00000506409 LMTK2Q8IWU2 1503 aa23.69■■□□□ 1.38
MED28-204ENST00000506409 PTPRTO14522 1441 aa23.68■■□□□ 1.38
MED28-204ENST00000506409 NCKAP5LQ9HCH0 1330 aa23.66■■□□□ 1.38
MED28-204ENST00000506409 CFAP65Q6ZU64 1925 aaKnown RBP23.66■■□□□ 1.38
MED28-204ENST00000506409 PKD2Q13563 968 aa23.65■■□□□ 1.38
MED28-204ENST00000506409 UGGT1Q9NYU2 1555 aa23.64■■□□□ 1.37
MED28-204ENST00000506409 THEMISQ8N1K5 641 aaPredicted RBP23.62■■□□□ 1.37
MED28-204ENST00000506409 EFCAB6Q5THR3 1501 aa23.62■■□□□ 1.37
MED28-204ENST00000506409 UNC13BO14795 1591 aa23.61■■□□□ 1.37
MED28-204ENST00000506409 ILDR1Q86SU0 546 aaPredicted RBP23.59■■□□□ 1.37
MED28-204ENST00000506409 TET3O43151 1660 aa23.56■■□□□ 1.36
MED28-204ENST00000506409 ANKLE2Q86XL3 938 aa23.55■■□□□ 1.36
MED28-204ENST00000506409 POLR1AO95602 1720 aaPredicted RBP23.55■■□□□ 1.36
MED28-204ENST00000506409 RPRD2Q5VT52 1461 aaKnown RBP23.55■■□□□ 1.36
MED28-204ENST00000506409 CERKQ8TCT0 537 aa23.54■■□□□ 1.36
MED28-204ENST00000506409 UBR1Q8IWV7 1749 aa23.53■■□□□ 1.36
MED28-204ENST00000506409 NOS1P29475 1434 aa23.53■■□□□ 1.36
MED28-204ENST00000506409 NUP155O75694 1391 aa23.52■■□□□ 1.36
MED28-204ENST00000506409 NEURL4Q96JN8 1562 aa23.52■■□□□ 1.36
MED28-204ENST00000506409 IQGAP3Q86VI3 1631 aa23.52■■□□□ 1.36
MED28-204ENST00000506409 SYNMO15061 1565 aa23.52■■□□□ 1.36
MED28-204ENST00000506409 GCC2Q8IWJ2 1684 aa23.51■■□□□ 1.35
MED28-204ENST00000506409 FBXO41Q8TF61 875 aa23.51■■□□□ 1.35
MED28-204ENST00000506409 PIK3C2BO00750 1634 aa23.5■■□□□ 1.35
MED28-204ENST00000506409 NAIPQ13075 1403 aa23.5■■□□□ 1.35
MED28-204ENST00000506409 STAG3Q9UJ98 1225 aa23.49■■□□□ 1.35
MED28-204ENST00000506409 IDI1Q13907 227 aa23.48■■□□□ 1.35
MED28-204ENST00000506409 SLC52A1Q9NWF4 448 aa23.47■■□□□ 1.35
MED28-204ENST00000506409 LTBP4Q8N2S1 1624 aa23.47■■□□□ 1.35
MED28-204ENST00000506409 HFM1A2PYH4 1435 aa23.46■■□□□ 1.35
MED28-204ENST00000506409 MED14O60244 1454 aa23.46■■□□□ 1.35
MED28-204ENST00000506409 NPHP4O75161 1426 aaPredicted RBP23.46■■□□□ 1.35
MED28-204ENST00000506409 ZNF335Q9H4Z2 1342 aaPredicted RBP23.46■■□□□ 1.35
MED28-204ENST00000506409 E9PCH4 1651 aa23.45■■□□□ 1.34
MED28-204ENST00000506409 SLIT1O75093 1534 aa23.44■■□□□ 1.34
MED28-204ENST00000506409 ARHGAP23Q9P227 1491 aa23.44■■□□□ 1.34
MED28-204ENST00000506409 KDM5AP29375 1690 aaKnown RBP23.44■■□□□ 1.34
MED28-204ENST00000506409 SCAF11Q99590 1463 aaKnown RBP23.43■■□□□ 1.34
MED28-204ENST00000506409 IQGAP1P46940 1657 aa23.41■■□□□ 1.34
MED28-204ENST00000506409 TMEM2Q9UHN6 1383 aa23.41■■□□□ 1.34
MED28-204ENST00000506409 ADGRB3O60242 1522 aa23.41■■□□□ 1.34
MED28-204ENST00000506409 TXNDC2Q86VQ3 553 aa23.4■■□□□ 1.34
MED28-204ENST00000506409 EID1Q9Y6B2 187 aa23.4■■□□□ 1.34
MED28-204ENST00000506409 LTKP29376 864 aa23.39■■□□□ 1.33
MED28-204ENST00000506409 TRIM52Q96A61 297 aa23.35■■□□□ 1.33
MED28-204ENST00000506409 IQSEC2Q5JU85 1478 aa23.35■■□□□ 1.33
MED28-204ENST00000506409 TMEM131LA2VDJ0 1609 aa23.32■■□□□ 1.32
MED28-204ENST00000506409 CHGAP10645 457 aaKnown RBP23.31■■□□□ 1.32
MED28-204ENST00000506409 CPS1P31327 1500 aa23.31■■□□□ 1.32
MED28-204ENST00000506409 SPHKAPQ2M3C7 1700 aa23.3■■□□□ 1.32
MED28-204ENST00000506409 MYO5BQ9ULV0 1848 aa23.29■■□□□ 1.32
MED28-204ENST00000506409 ZFYVE9O95405 1425 aa23.26■■□□□ 1.31
MED28-204ENST00000506409 RIMS2Q9UQ26 1411 aa23.26■■□□□ 1.31
MED28-204ENST00000506409 HDGFP51858 240 aaKnown RBP23.26■■□□□ 1.31
MED28-204ENST00000506409 SLC4A1APQ9BWU0 796 aaKnown RBP23.26■■□□□ 1.31
MED28-204ENST00000506409 PPP1R15AO75807 674 aaPredicted RBP23.24■■□□□ 1.31
MED28-204ENST00000506409 TRPM2O94759 1503 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms