RNA–Protein interactions for RNA: ENST00000505886.5

PDLIM3-206, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4

Gene PDLIM3, Length 571 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-206ENST00000505886 CROCC2H7BZ55 1655 aa23.81■■□□□ 1.4
PDLIM3-206ENST00000505886 KDM5DQ9BY66 1539 aa23.8■■□□□ 1.4
PDLIM3-206ENST00000505886 ROCK1Q13464 1354 aa23.79■■□□□ 1.4
PDLIM3-206ENST00000505886 UHRF1BP1Q6BDS2 1440 aa23.79■■□□□ 1.4
PDLIM3-206ENST00000505886 CEBPAP49715 358 aaPredicted RBP23.79■■□□□ 1.4
PDLIM3-206ENST00000505886 RRP7BPQ9NSQ0 103 aa23.79■■□□□ 1.4
PDLIM3-206ENST00000505886 RNF17Q9BXT8 1623 aaKnown RBP23.77■■□□□ 1.4
PDLIM3-206ENST00000505886 RRBP1Q9P2E9 1410 aaKnown RBP23.75■■□□□ 1.39
PDLIM3-206ENST00000505886 C3P01024 1663 aa23.73■■□□□ 1.39
PDLIM3-206ENST00000505886 PLPPR3Q6T4P5 718 aa23.73■■□□□ 1.39
PDLIM3-206ENST00000505886 KANK1Q14678 1352 aa23.73■■□□□ 1.39
PDLIM3-206ENST00000505886 CHIC2Q9UKJ5 165 aa23.72■■□□□ 1.39
PDLIM3-206ENST00000505886 PTPRKQ15262 1439 aa23.72■■□□□ 1.39
PDLIM3-206ENST00000505886 PZPP20742 1482 aa23.72■■□□□ 1.39
PDLIM3-206ENST00000505886 PREX1Q8TCU6 1659 aa23.72■■□□□ 1.39
PDLIM3-206ENST00000505886 SETD1BQ9UPS6 1966 aaKnown RBP23.72■■□□□ 1.39
PDLIM3-206ENST00000505886 ZC3H13Q5T200 1668 aaKnown RBP23.7■■□□□ 1.39
PDLIM3-206ENST00000505886 PRDM15P57071 1507 aaPredicted RBP23.69■■□□□ 1.38
PDLIM3-206ENST00000505886 ANKRD50Q9ULJ7 1429 aa23.68■■□□□ 1.38
PDLIM3-206ENST00000505886 CLTCQ00610 1675 aaKnown RBP23.68■■□□□ 1.38
PDLIM3-206ENST00000505886 DMRT2Q9Y5R5 561 aa23.67■■□□□ 1.38
PDLIM3-206ENST00000505886 ABCC3O15438 1527 aa23.67■■□□□ 1.38
PDLIM3-206ENST00000505886 ARHGAP31Q2M1Z3 1444 aa23.67■■□□□ 1.38
PDLIM3-206ENST00000505886 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
PDLIM3-206ENST00000505886 DEPDC5O75140 1603 aa23.62■■□□□ 1.37
PDLIM3-206ENST00000505886 MROH1Q8NDA8 1641 aa23.62■■□□□ 1.37
PDLIM3-206ENST00000505886 LMTK2Q8IWU2 1503 aa23.62■■□□□ 1.37
PDLIM3-206ENST00000505886 TNRQ92752 1358 aa23.62■■□□□ 1.37
PDLIM3-206ENST00000505886 NLRP1Q9C000 1473 aa23.61■■□□□ 1.37
PDLIM3-206ENST00000505886 HSPA2P54652 639 aa23.59■■□□□ 1.37
PDLIM3-206ENST00000505886 VWDEQ8N2E2 1590 aa23.57■■□□□ 1.36
PDLIM3-206ENST00000505886 A2ML1A8K2U0 1454 aa23.57■■□□□ 1.36
PDLIM3-206ENST00000505886 PLA2R1Q13018 1463 aa23.56■■□□□ 1.36
PDLIM3-206ENST00000505886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.55■■□□□ 1.36
PDLIM3-206ENST00000505886 SPATA31D1Q6ZQQ2 1576 aa23.55■■□□□ 1.36
PDLIM3-206ENST00000505886 PKD2Q13563 968 aa23.54■■□□□ 1.36
PDLIM3-206ENST00000505886 FBXO31Q5XUX0 539 aaPredicted RBP23.54■■□□□ 1.36
PDLIM3-206ENST00000505886 RPRD2Q5VT52 1461 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-206ENST00000505886 ACIN1Q9UKV3 1341 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-206ENST00000505886 CEP170BQ9Y4F5 1589 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-206ENST00000505886 ITGAEP38570 1179 aa23.53■■□□□ 1.36
PDLIM3-206ENST00000505886 ILDR1Q86SU0 546 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-206ENST00000505886 THEMISQ8N1K5 641 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-206ENST00000505886 ZNF142P52746 1687 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-206ENST00000505886 ERVK-7P63135 1459 aa23.52■■□□□ 1.36
PDLIM3-206ENST00000505886 MYO3AQ8NEV4 1616 aa23.51■■□□□ 1.35
PDLIM3-206ENST00000505886 PTPRTO14522 1441 aa23.5■■□□□ 1.35
PDLIM3-206ENST00000505886 CAMSAP1Q5T5Y3 1602 aa23.5■■□□□ 1.35
PDLIM3-206ENST00000505886 HFM1A2PYH4 1435 aa23.47■■□□□ 1.35
PDLIM3-206ENST00000505886 UNC13BO14795 1591 aa23.47■■□□□ 1.35
PDLIM3-206ENST00000505886 EFCAB6Q5THR3 1501 aa23.46■■□□□ 1.35
PDLIM3-206ENST00000505886 SLC52A1Q9NWF4 448 aa23.46■■□□□ 1.35
PDLIM3-206ENST00000505886 NAIPQ13075 1403 aa23.43■■□□□ 1.34
PDLIM3-206ENST00000505886 UGGT1Q9NYU2 1555 aa23.43■■□□□ 1.34
PDLIM3-206ENST00000505886 NOS1P29475 1434 aa23.42■■□□□ 1.34
PDLIM3-206ENST00000505886 NUP155O75694 1391 aa23.42■■□□□ 1.34
PDLIM3-206ENST00000505886 ANKLE2Q86XL3 938 aa23.41■■□□□ 1.34
PDLIM3-206ENST00000505886 CEP152O94986 1710 aa23.4■■□□□ 1.34
PDLIM3-206ENST00000505886 TET3O43151 1660 aa23.38■■□□□ 1.33
PDLIM3-206ENST00000505886 FBXO41Q8TF61 875 aa23.38■■□□□ 1.33
PDLIM3-206ENST00000505886 IQGAP3Q86VI3 1631 aa23.37■■□□□ 1.33
PDLIM3-206ENST00000505886 STRCQ7RTU9 1775 aa23.35■■□□□ 1.33
PDLIM3-206ENST00000505886 KDM5AP29375 1690 aaKnown RBP23.32■■□□□ 1.32
PDLIM3-206ENST00000505886 MED14O60244 1454 aa23.32■■□□□ 1.32
PDLIM3-206ENST00000505886 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
PDLIM3-206ENST00000505886 NCKAP5LQ9HCH0 1330 aa23.32■■□□□ 1.32
PDLIM3-206ENST00000505886 GCC2Q8IWJ2 1684 aa23.32■■□□□ 1.32
PDLIM3-206ENST00000505886 IDI1Q13907 227 aa23.31■■□□□ 1.32
PDLIM3-206ENST00000505886 HDGFP51858 240 aaKnown RBP23.3■■□□□ 1.32
PDLIM3-206ENST00000505886 EID1Q9Y6B2 187 aa23.3■■□□□ 1.32
PDLIM3-206ENST00000505886 SLIT1O75093 1534 aa23.29■■□□□ 1.32
PDLIM3-206ENST00000505886 ARHGAP23Q9P227 1491 aa23.28■■□□□ 1.32
PDLIM3-206ENST00000505886 TMEM2Q9UHN6 1383 aa23.27■■□□□ 1.32
PDLIM3-206ENST00000505886 CERKQ8TCT0 537 aa23.26■■□□□ 1.31
PDLIM3-206ENST00000505886 SYNMO15061 1565 aa23.26■■□□□ 1.31
PDLIM3-206ENST00000505886 NPHP4O75161 1426 aaPredicted RBP23.24■■□□□ 1.31
PDLIM3-206ENST00000505886 SCAF11Q99590 1463 aaKnown RBP23.24■■□□□ 1.31
PDLIM3-206ENST00000505886 UBR1Q8IWV7 1749 aa23.23■■□□□ 1.31
PDLIM3-206ENST00000505886 TXNDC2Q86VQ3 553 aa23.22■■□□□ 1.31
PDLIM3-206ENST00000505886 TRIM52Q96A61 297 aa23.22■■□□□ 1.31
PDLIM3-206ENST00000505886 IQSEC2Q5JU85 1478 aa23.22■■□□□ 1.31
PDLIM3-206ENST00000505886 ADGRB3O60242 1522 aa23.22■■□□□ 1.31
PDLIM3-206ENST00000505886 HRCP23327 699 aa23.21■■□□□ 1.31
PDLIM3-206ENST00000505886 SETD5Q9C0A6 1442 aa23.2■■□□□ 1.3
PDLIM3-206ENST00000505886 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.2■■□□□ 1.3
PDLIM3-206ENST00000505886 E9PCH4 1651 aa23.19■■□□□ 1.3
PDLIM3-206ENST00000505886 PIK3C2BO00750 1634 aa23.19■■□□□ 1.3
PDLIM3-206ENST00000505886 NEURL4Q96JN8 1562 aa23.19■■□□□ 1.3
PDLIM3-206ENST00000505886 SLC4A1APQ9BWU0 796 aaKnown RBP23.19■■□□□ 1.3
PDLIM3-206ENST00000505886 POLR1AO95602 1720 aaPredicted RBP23.18■■□□□ 1.3
PDLIM3-206ENST00000505886 LTKP29376 864 aa23.15■■□□□ 1.3
PDLIM3-206ENST00000505886 LTBP4Q8N2S1 1624 aa23.14■■□□□ 1.29
PDLIM3-206ENST00000505886 CPS1P31327 1500 aa23.13■■□□□ 1.29
PDLIM3-206ENST00000505886 TRPM2O94759 1503 aa23.12■■□□□ 1.29
PDLIM3-206ENST00000505886 ZFYVE9O95405 1425 aa23.11■■□□□ 1.29
PDLIM3-206ENST00000505886 ZNF335Q9H4Z2 1342 aaPredicted RBP23.1■■□□□ 1.29
PDLIM3-206ENST00000505886 IQGAP1P46940 1657 aa23.1■■□□□ 1.29
PDLIM3-206ENST00000505886 TMEM131LA2VDJ0 1609 aa23.1■■□□□ 1.29
PDLIM3-206ENST00000505886 MPHOSPH9Q99550 1183 aa23.09■■□□□ 1.29
PDLIM3-206ENST00000505886 PLEKHG1Q9ULL1 1385 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms