RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 TSPY10P0CW01 314 aa15.89■□□□□ 0.13
NEDD9-210ENST00000505589 PIP4K2BP78356 416 aa15.89■□□□□ 0.13
NEDD9-210ENST00000505589 ADGBQ8N7X0 1667 aa15.88■□□□□ 0.13
NEDD9-210ENST00000505589 CPS1P31327 1500 aa15.88■□□□□ 0.13
NEDD9-210ENST00000505589 MYO3AQ8NEV4 1616 aa15.87■□□□□ 0.13
NEDD9-210ENST00000505589 INO80Q9ULG1 1556 aaPredicted RBP15.87■□□□□ 0.13
NEDD9-210ENST00000505589 TNRQ92752 1358 aa15.87■□□□□ 0.13
NEDD9-210ENST00000505589 FAM135AQ9P2D6 1515 aa15.85■□□□□ 0.13
NEDD9-210ENST00000505589 HSPA1LP34931 641 aa15.85■□□□□ 0.13
NEDD9-210ENST00000505589 SHANK2Q9UPX8 1470 aa15.84■□□□□ 0.13
NEDD9-210ENST00000505589 ZNF644Q9H582 1327 aaPredicted RBP15.84■□□□□ 0.13
NEDD9-210ENST00000505589 DNMT1P26358 1616 aaKnown RBP15.83■□□□□ 0.13
NEDD9-210ENST00000505589 FBXO31Q5XUX0 539 aaPredicted RBP15.83■□□□□ 0.12
NEDD9-210ENST00000505589 MBD5Q9P267 1494 aa15.83■□□□□ 0.12
NEDD9-210ENST00000505589 MIA2Q96PC5 1412 aa15.82■□□□□ 0.12
NEDD9-210ENST00000505589 CEP162Q5TB80 1403 aa15.81■□□□□ 0.12
NEDD9-210ENST00000505589 NLRP1Q9C000 1473 aa15.81■□□□□ 0.12
NEDD9-210ENST00000505589 PZPP20742 1482 aa15.8■□□□□ 0.12
NEDD9-210ENST00000505589 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.8■□□□□ 0.12
NEDD9-210ENST00000505589 EHBP1L1Q8N3D4 1523 aa15.78■□□□□ 0.12
NEDD9-210ENST00000505589 KDM5DQ9BY66 1539 aa15.78■□□□□ 0.12
NEDD9-210ENST00000505589 CCDC141Q6ZP82 1450 aa15.78■□□□□ 0.12
NEDD9-210ENST00000505589 MED14O60244 1454 aa15.77■□□□□ 0.11
NEDD9-210ENST00000505589 UGGT1Q9NYU2 1555 aa15.76■□□□□ 0.11
NEDD9-210ENST00000505589 NPHP4O75161 1426 aaPredicted RBP15.76■□□□□ 0.11
NEDD9-210ENST00000505589 TIAM1Q13009 1591 aa15.74■□□□□ 0.11
NEDD9-210ENST00000505589 POLR1AO95602 1720 aaPredicted RBP15.74■□□□□ 0.11
NEDD9-210ENST00000505589 EID1Q9Y6B2 187 aa15.72■□□□□ 0.11
NEDD9-210ENST00000505589 DEPDC5O75140 1603 aa15.72■□□□□ 0.11
NEDD9-210ENST00000505589 MED1Q15648 1581 aaPredicted RBP15.71■□□□□ 0.11
NEDD9-210ENST00000505589 NEURL4Q96JN8 1562 aa15.7■□□□□ 0.1
NEDD9-210ENST00000505589 NCOA2Q15596 1464 aa15.69■□□□□ 0.1
NEDD9-210ENST00000505589 CAMSAP2Q08AD1 1489 aa15.68■□□□□ 0.1
NEDD9-210ENST00000505589 TXNDC2Q86VQ3 553 aa15.68■□□□□ 0.1
NEDD9-210ENST00000505589 VWDEQ8N2E2 1590 aa15.67■□□□□ 0.1
NEDD9-210ENST00000505589 ARHGEF5Q12774 1597 aa15.66■□□□□ 0.1
NEDD9-210ENST00000505589 STAG3Q9UJ98 1225 aa15.65■□□□□ 0.1
NEDD9-210ENST00000505589 LRRC7Q96NW7 1537 aa15.64■□□□□ 0.09
NEDD9-210ENST00000505589 IQGAP1P46940 1657 aa15.64■□□□□ 0.09
NEDD9-210ENST00000505589 ZC3H13Q5T200 1668 aaKnown RBP15.62■□□□□ 0.09
NEDD9-210ENST00000505589 ERVK-7P63135 1459 aa15.6■□□□□ 0.09
NEDD9-210ENST00000505589 SYNMO15061 1565 aa15.6■□□□□ 0.09
NEDD9-210ENST00000505589 MYOM3Q5VTT5 1437 aa15.6■□□□□ 0.09
NEDD9-210ENST00000505589 SCAF11Q99590 1463 aaKnown RBP15.59■□□□□ 0.09
NEDD9-210ENST00000505589 ABCC3O15438 1527 aa15.59■□□□□ 0.09
NEDD9-210ENST00000505589 LTKP29376 864 aa15.59■□□□□ 0.09
NEDD9-210ENST00000505589 KANK1Q14678 1352 aa15.59■□□□□ 0.09
NEDD9-210ENST00000505589 ARHGAP31Q2M1Z3 1444 aa15.59■□□□□ 0.09
NEDD9-210ENST00000505589 FAM135BQ49AJ0 1406 aa15.59■□□□□ 0.09
NEDD9-210ENST00000505589 RNF17Q9BXT8 1623 aaKnown RBP15.58■□□□□ 0.09
NEDD9-210ENST00000505589 HDGFP51858 240 aaKnown RBP15.58■□□□□ 0.08
NEDD9-210ENST00000505589 MAST1Q9Y2H9 1570 aa15.58■□□□□ 0.08
NEDD9-210ENST00000505589 EIF2AK4Q9P2K8 1649 aaKnown RBP15.57■□□□□ 0.08
NEDD9-210ENST00000505589 KCNA6P17658 529 aa15.57■□□□□ 0.08
NEDD9-210ENST00000505589 APLP2Q06481 763 aa15.57■□□□□ 0.08
NEDD9-210ENST00000505589 DUOX2Q9NRD8 1548 aa15.57■□□□□ 0.08
NEDD9-210ENST00000505589 LRRC9Q6ZRR7 1453 aa15.56■□□□□ 0.08
NEDD9-210ENST00000505589 SLIT1O75093 1534 aa15.55■□□□□ 0.08
NEDD9-210ENST00000505589 ARHGAP23Q9P227 1491 aa15.54■□□□□ 0.08
NEDD9-210ENST00000505589 PROSER2Q86WR7 435 aaPredicted RBP15.54■□□□□ 0.08
NEDD9-210ENST00000505589 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.54■□□□□ 0.08
NEDD9-210ENST00000505589 SLC52A1Q9NWF4 448 aa15.54■□□□□ 0.08
NEDD9-210ENST00000505589 ALKQ9UM73 1620 aa15.54■□□□□ 0.08
NEDD9-210ENST00000505589 TMEM2Q9UHN6 1383 aa15.53■□□□□ 0.08
NEDD9-210ENST00000505589 RRP7BPQ9NSQ0 103 aa15.53■□□□□ 0.08
NEDD9-210ENST00000505589 ERBINQ96RT1 1412 aa15.52■□□□□ 0.08
NEDD9-210ENST00000505589 BCANQ96GW7 911 aa15.52■□□□□ 0.08
NEDD9-210ENST00000505589 RGS17Q9UGC6 210 aaPredicted RBP15.52■□□□□ 0.08
NEDD9-210ENST00000505589 MAP3K1Q13233 1512 aa15.52■□□□□ 0.07
NEDD9-210ENST00000505589 UBR1Q8IWV7 1749 aa15.51■□□□□ 0.07
NEDD9-210ENST00000505589 KIF15Q9NS87 1388 aa15.51■□□□□ 0.07
NEDD9-210ENST00000505589 VPS8Q8N3P4 1428 aa15.51■□□□□ 0.07
NEDD9-210ENST00000505589 CFAP65Q6ZU64 1925 aaKnown RBP15.51■□□□□ 0.07
NEDD9-210ENST00000505589 IDI1Q13907 227 aa15.5■□□□□ 0.07
NEDD9-210ENST00000505589 STRCP1A6NGW2 1772 aa15.49■□□□□ 0.07
NEDD9-210ENST00000505589 TMEM94Q12767 1356 aa15.49■□□□□ 0.07
NEDD9-210ENST00000505589 KANK4Q5T7N3 995 aaPredicted RBP15.48■□□□□ 0.07
NEDD9-210ENST00000505589 MSH6P52701 1360 aa15.48■□□□□ 0.07
NEDD9-210ENST00000505589 SLC26A8Q96RN1 970 aa15.47■□□□□ 0.07
NEDD9-210ENST00000505589 SLAIN2Q9P270 581 aa15.47■□□□□ 0.07
NEDD9-210ENST00000505589 ANKRD30AQ9BXX3 1397 aa15.46■□□□□ 0.07
NEDD9-210ENST00000505589 FOXD1Q16676 465 aa15.45■□□□□ 0.06
NEDD9-210ENST00000505589 EFCAB6Q5THR3 1501 aa15.44■□□□□ 0.06
NEDD9-210ENST00000505589 MROH1Q8NDA8 1641 aa15.44■□□□□ 0.06
NEDD9-210ENST00000505589 POTEAQ6S8J7 498 aa15.44■□□□□ 0.06
NEDD9-210ENST00000505589 KDM5AP29375 1690 aaKnown RBP15.44■□□□□ 0.06
NEDD9-210ENST00000505589 PRDM15P57071 1507 aaPredicted RBP15.43■□□□□ 0.06
NEDD9-210ENST00000505589 CEP152O94986 1710 aa15.43■□□□□ 0.06
NEDD9-210ENST00000505589 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.43■□□□□ 0.06
NEDD9-210ENST00000505589 ABCC5O15440 1437 aa15.43■□□□□ 0.06
NEDD9-210ENST00000505589 JCADQ9P266 1359 aa15.42■□□□□ 0.06
NEDD9-210ENST00000505589 PPP1R15AO75807 674 aaPredicted RBP15.42■□□□□ 0.06
NEDD9-210ENST00000505589 ZNF772Q68DY9 489 aaPredicted RBP15.42■□□□□ 0.06
NEDD9-210ENST00000505589 TBX22Q9Y458 520 aa15.41■□□□□ 0.06
NEDD9-210ENST00000505589 NCOA3Q9Y6Q9 1424 aa15.41■□□□□ 0.06
NEDD9-210ENST00000505589 NKTRP30414 1462 aaKnown RBP15.4■□□□□ 0.06
NEDD9-210ENST00000505589 LMTK2Q8IWU2 1503 aa15.4■□□□□ 0.06
NEDD9-210ENST00000505589 CHIC2Q9UKJ5 165 aa15.4■□□□□ 0.06
NEDD9-210ENST00000505589 PIK3C2BO00750 1634 aa15.39■□□□□ 0.05
NEDD9-210ENST00000505589 C14orf37Q86TY3 774 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms