RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 ZC3H13Q5T200 1668 aaKnown RBP18.83■□□□□ 0.61
SNCA-208ENST00000505199 KDM4FA0A1W2PPD8 638 aa18.83■□□□□ 0.6
SNCA-208ENST00000505199 KIF3BO15066 747 aa18.83■□□□□ 0.6
SNCA-208ENST00000505199 MROH2AA6NES4 1674 aa18.82■□□□□ 0.6
SNCA-208ENST00000505199 GCC2Q8IWJ2 1684 aa18.82■□□□□ 0.6
SNCA-208ENST00000505199 MADDQ8WXG6 1647 aa18.82■□□□□ 0.6
SNCA-208ENST00000505199 ESF1Q9H501 851 aaKnown RBP18.8■□□□□ 0.6
SNCA-208ENST00000505199 NAIPQ13075 1403 aa18.8■□□□□ 0.6
SNCA-208ENST00000505199 ITGAEP38570 1179 aa18.79■□□□□ 0.6
SNCA-208ENST00000505199 MROH1Q8NDA8 1641 aa18.78■□□□□ 0.6
SNCA-208ENST00000505199 PTPRMP28827 1452 aa18.77■□□□□ 0.6
SNCA-208ENST00000505199 UNC13BO14795 1591 aa18.77■□□□□ 0.6
SNCA-208ENST00000505199 VWDEQ8N2E2 1590 aa18.77■□□□□ 0.6
SNCA-208ENST00000505199 KANK1Q14678 1352 aa18.77■□□□□ 0.6
SNCA-208ENST00000505199 LMTK2Q8IWU2 1503 aa18.76■□□□□ 0.59
SNCA-208ENST00000505199 GGT6Q6P531 493 aa18.76■□□□□ 0.59
SNCA-208ENST00000505199 MLECQ14165 292 aa18.75■□□□□ 0.59
SNCA-208ENST00000505199 RIMS1Q86UR5 1692 aaKnown RBP18.75■□□□□ 0.59
SNCA-208ENST00000505199 WASHC2CQ9Y4E1 1318 aa18.74■□□□□ 0.59
SNCA-208ENST00000505199 ABCC3O15438 1527 aa18.73■□□□□ 0.59
SNCA-208ENST00000505199 ARHGAP31Q2M1Z3 1444 aa18.73■□□□□ 0.59
SNCA-208ENST00000505199 NPATQ14207 1427 aa18.72■□□□□ 0.59
SNCA-208ENST00000505199 ZMYM3Q14202 1370 aa18.71■□□□□ 0.59
SNCA-208ENST00000505199 CLTCQ00610 1675 aaKnown RBP18.71■□□□□ 0.59
SNCA-208ENST00000505199 HRCP23327 699 aa18.71■□□□□ 0.59
SNCA-208ENST00000505199 IQGAP3Q86VI3 1631 aa18.7■□□□□ 0.58
SNCA-208ENST00000505199 SETD1BQ9UPS6 1966 aaKnown RBP18.7■□□□□ 0.58
SNCA-208ENST00000505199 C3P01024 1663 aa18.69■□□□□ 0.58
SNCA-208ENST00000505199 PZPP20742 1482 aa18.69■□□□□ 0.58
SNCA-208ENST00000505199 RPRD2Q5VT52 1461 aaKnown RBP18.69■□□□□ 0.58
SNCA-208ENST00000505199 SETD5Q9C0A6 1442 aa18.68■□□□□ 0.58
SNCA-208ENST00000505199 TRIM26Q12899 539 aaPredicted RBP18.67■□□□□ 0.58
SNCA-208ENST00000505199 CAMSAP1Q5T5Y3 1602 aa18.67■□□□□ 0.58
SNCA-208ENST00000505199 TET3O43151 1660 aa18.66■□□□□ 0.58
SNCA-208ENST00000505199 EFCAB6Q5THR3 1501 aa18.65■□□□□ 0.58
SNCA-208ENST00000505199 CEP152O94986 1710 aa18.64■□□□□ 0.57
SNCA-208ENST00000505199 NUP155O75694 1391 aa18.64■□□□□ 0.57
SNCA-208ENST00000505199 SPATA31D1Q6ZQQ2 1576 aa18.61■□□□□ 0.57
SNCA-208ENST00000505199 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.61■□□□□ 0.57
SNCA-208ENST00000505199 AEBP2Q6ZN18 517 aaPredicted RBP18.6■□□□□ 0.57
SNCA-208ENST00000505199 PREX1Q8TCU6 1659 aa18.59■□□□□ 0.57
SNCA-208ENST00000505199 RAB3GAP2Q9H2M9 1393 aa18.57■□□□□ 0.56
SNCA-208ENST00000505199 ERVK-7P63135 1459 aa18.57■□□□□ 0.56
SNCA-208ENST00000505199 NLRP1Q9C000 1473 aa18.57■□□□□ 0.56
SNCA-208ENST00000505199 CEBPAP49715 358 aaPredicted RBP18.55■□□□□ 0.56
SNCA-208ENST00000505199 NOS1P29475 1434 aa18.55■□□□□ 0.56
SNCA-208ENST00000505199 UHRF1BP1Q6BDS2 1440 aa18.55■□□□□ 0.56
SNCA-208ENST00000505199 TNRQ92752 1358 aa18.54■□□□□ 0.56
SNCA-208ENST00000505199 E9PCH4 1651 aa18.54■□□□□ 0.56
SNCA-208ENST00000505199 ZNF142P52746 1687 aaPredicted RBP18.54■□□□□ 0.56
SNCA-208ENST00000505199 SLC52A1Q9NWF4 448 aa18.52■□□□□ 0.56
SNCA-208ENST00000505199 KDM5AP29375 1690 aaKnown RBP18.52■□□□□ 0.56
SNCA-208ENST00000505199 MYO3AQ8NEV4 1616 aa18.52■□□□□ 0.55
SNCA-208ENST00000505199 TRIM52Q96A61 297 aa18.51■□□□□ 0.55
SNCA-208ENST00000505199 PTPRTO14522 1441 aa18.5■□□□□ 0.55
SNCA-208ENST00000505199 A2ML1A8K2U0 1454 aa18.5■□□□□ 0.55
SNCA-208ENST00000505199 LMTK3Q96Q04 1460 aa18.5■□□□□ 0.55
SNCA-208ENST00000505199 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
SNCA-208ENST00000505199 CEP170BQ9Y4F5 1589 aaPredicted RBP18.49■□□□□ 0.55
SNCA-208ENST00000505199 FBXO31Q5XUX0 539 aaPredicted RBP18.48■□□□□ 0.55
SNCA-208ENST00000505199 SPHKAPQ2M3C7 1700 aa18.46■□□□□ 0.55
SNCA-208ENST00000505199 PIK3C2BO00750 1634 aa18.46■□□□□ 0.55
SNCA-208ENST00000505199 MPHOSPH9Q99550 1183 aa18.46■□□□□ 0.55
SNCA-208ENST00000505199 SYNMO15061 1565 aa18.46■□□□□ 0.55
SNCA-208ENST00000505199 TRPM2O94759 1503 aa18.45■□□□□ 0.54
SNCA-208ENST00000505199 PKD2Q13563 968 aa18.44■□□□□ 0.54
SNCA-208ENST00000505199 CFAP65Q6ZU64 1925 aaKnown RBP18.44■□□□□ 0.54
SNCA-208ENST00000505199 PLA2R1Q13018 1463 aa18.44■□□□□ 0.54
SNCA-208ENST00000505199 UGGT1Q9NYU2 1555 aa18.42■□□□□ 0.54
SNCA-208ENST00000505199 THEMISQ8N1K5 641 aaPredicted RBP18.41■□□□□ 0.54
SNCA-208ENST00000505199 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
SNCA-208ENST00000505199 UBR1Q8IWV7 1749 aa18.39■□□□□ 0.53
SNCA-208ENST00000505199 ADGRB3O60242 1522 aa18.39■□□□□ 0.53
SNCA-208ENST00000505199 NEURL4Q96JN8 1562 aa18.38■□□□□ 0.53
SNCA-208ENST00000505199 IDI1Q13907 227 aa18.38■□□□□ 0.53
SNCA-208ENST00000505199 SLIT1O75093 1534 aa18.36■□□□□ 0.53
SNCA-208ENST00000505199 ARHGAP23Q9P227 1491 aa18.35■□□□□ 0.53
SNCA-208ENST00000505199 TMEM131LA2VDJ0 1609 aa18.34■□□□□ 0.53
SNCA-208ENST00000505199 CCDC144AA2RUR9 1427 aa18.34■□□□□ 0.53
SNCA-208ENST00000505199 ANKRD30BQ9BXX2 1392 aa18.32■□□□□ 0.52
SNCA-208ENST00000505199 CLTCL1P53675 1640 aa18.32■□□□□ 0.52
SNCA-208ENST00000505199 HDGFP51858 240 aaKnown RBP18.32■□□□□ 0.52
SNCA-208ENST00000505199 DMRT2Q9Y5R5 561 aa18.32■□□□□ 0.52
SNCA-208ENST00000505199 KIF1BO60333 1816 aa18.32■□□□□ 0.52
SNCA-208ENST00000505199 TMEM2Q9UHN6 1383 aa18.31■□□□□ 0.52
SNCA-208ENST00000505199 STAG3Q9UJ98 1225 aa18.31■□□□□ 0.52
SNCA-208ENST00000505199 MED14O60244 1454 aa18.3■□□□□ 0.52
SNCA-208ENST00000505199 PCGF6Q9BYE7 350 aa18.29■□□□□ 0.52
SNCA-208ENST00000505199 POLR1AO95602 1720 aaPredicted RBP18.29■□□□□ 0.52
SNCA-208ENST00000505199 ANKLE2Q86XL3 938 aa18.28■□□□□ 0.52
SNCA-208ENST00000505199 STRCQ7RTU9 1775 aa18.27■□□□□ 0.52
SNCA-208ENST00000505199 RPGRIP1LQ68CZ1 1315 aa18.27■□□□□ 0.52
SNCA-208ENST00000505199 HSPA2P54652 639 aa18.27■□□□□ 0.52
SNCA-208ENST00000505199 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.27■□□□□ 0.52
SNCA-208ENST00000505199 SCAF11Q99590 1463 aaKnown RBP18.26■□□□□ 0.51
SNCA-208ENST00000505199 ZFYVE9O95405 1425 aa18.26■□□□□ 0.51
SNCA-208ENST00000505199 EID1Q9Y6B2 187 aa18.26■□□□□ 0.51
SNCA-208ENST00000505199 DHX57Q6P158 1386 aaKnown RBP18.26■□□□□ 0.51
SNCA-208ENST00000505199 SPATA31E1Q6ZUB1 1445 aa18.25■□□□□ 0.51
SNCA-208ENST00000505199 FOXD1Q16676 465 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms