RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SAMD9LQ8IVG5 1584 aa15.43■□□□□ 0.06
NUP54-203ENST00000504173 MIA2Q96PC5 1412 aa15.43■□□□□ 0.06
NUP54-203ENST00000504173 MYT1LQ9UL68 1186 aa15.42■□□□□ 0.06
NUP54-203ENST00000504173 ABCC1P33527 1531 aa15.42■□□□□ 0.06
NUP54-203ENST00000504173 FGD6Q6ZV73 1430 aa15.42■□□□□ 0.06
NUP54-203ENST00000504173 A2ML1A8K2U0 1454 aa15.41■□□□□ 0.06
NUP54-203ENST00000504173 PLEKHH2Q8IVE3 1493 aa15.41■□□□□ 0.06
NUP54-203ENST00000504173 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
NUP54-203ENST00000504173 ZNF644Q9H582 1327 aaPredicted RBP15.4■□□□□ 0.06
NUP54-203ENST00000504173 CAMSAP2Q08AD1 1489 aa15.4■□□□□ 0.06
NUP54-203ENST00000504173 DNMT1P26358 1616 aaKnown RBP15.39■□□□□ 0.05
NUP54-203ENST00000504173 POLR1AO95602 1720 aaPredicted RBP15.39■□□□□ 0.05
NUP54-203ENST00000504173 RNF17Q9BXT8 1623 aaKnown RBP15.39■□□□□ 0.05
NUP54-203ENST00000504173 PTPN23Q9H3S7 1636 aa15.39■□□□□ 0.05
NUP54-203ENST00000504173 SYCP2Q9BX26 1530 aa15.38■□□□□ 0.05
NUP54-203ENST00000504173 SETD1AO15047 1707 aaKnown RBP15.38■□□□□ 0.05
NUP54-203ENST00000504173 KIAA1107Q9UPP5 1409 aa15.38■□□□□ 0.05
NUP54-203ENST00000504173 KIDINS220Q9ULH0 1771 aa15.36■□□□□ 0.05
NUP54-203ENST00000504173 HNRNPMP52272 730 aaKnown RBP eCLIP15.36■□□□□ 0.051e-7■■■■□ 25.9
NUP54-203ENST00000504173 UPF1Q92900 1129 aaKnown RBP eCLIP15.36■□□□□ 0.05
NUP54-203ENST00000504173 LRRC7Q96NW7 1537 aa15.34■□□□□ 0.05
NUP54-203ENST00000504173 FAM50AQ14320 339 aaKnown RBP15.34■□□□□ 0.05
NUP54-203ENST00000504173 MED14O60244 1454 aa15.33■□□□□ 0.05
NUP54-203ENST00000504173 SYNMO15061 1565 aa15.33■□□□□ 0.05
NUP54-203ENST00000504173 CLTCQ00610 1675 aaKnown RBP15.33■□□□□ 0.04
NUP54-203ENST00000504173 MBD5Q9P267 1494 aa15.33■□□□□ 0.04
NUP54-203ENST00000504173 CCDC141Q6ZP82 1450 aa15.32■□□□□ 0.04
NUP54-203ENST00000504173 ARHGEF5Q12774 1597 aa15.32■□□□□ 0.04
NUP54-203ENST00000504173 RRBP1Q9P2E9 1410 aaKnown RBP15.31■□□□□ 0.04
NUP54-203ENST00000504173 RSPH4AQ5TD94 716 aa15.3■□□□□ 0.04
NUP54-203ENST00000504173 DEPDC5O75140 1603 aa15.29■□□□□ 0.04
NUP54-203ENST00000504173 ANKLE2Q86XL3 938 aa15.29■□□□□ 0.04
NUP54-203ENST00000504173 NPHP4O75161 1426 aaPredicted RBP15.28■□□□□ 0.04
NUP54-203ENST00000504173 SPAG9O60271 1321 aaKnown RBP15.28■□□□□ 0.04
NUP54-203ENST00000504173 PLXNC1O60486 1568 aa15.28■□□□□ 0.04
NUP54-203ENST00000504173 FAM135BQ49AJ0 1406 aa15.27■□□□□ 0.04
NUP54-203ENST00000504173 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.27■□□□□ 0.04
NUP54-203ENST00000504173 ABCC5O15440 1437 aa15.26■□□□□ 0.03
NUP54-203ENST00000504173 DAPK1P53355 1430 aa15.26■□□□□ 0.03
NUP54-203ENST00000504173 TSPY4P0CV99 314 aa15.26■□□□□ 0.03
NUP54-203ENST00000504173 TSPY10P0CW01 314 aa15.26■□□□□ 0.03
NUP54-203ENST00000504173 STRCP1A6NGW2 1772 aa15.26■□□□□ 0.03
NUP54-203ENST00000504173 CROCC2H7BZ55 1655 aa15.25■□□□□ 0.03
NUP54-203ENST00000504173 INO80Q9ULG1 1556 aaPredicted RBP15.24■□□□□ 0.03
NUP54-203ENST00000504173 ATP7AQ04656 1500 aa15.24■□□□□ 0.03
NUP54-203ENST00000504173 ITGAEP38570 1179 aa15.23■□□□□ 0.03
NUP54-203ENST00000504173 MAST1Q9Y2H9 1570 aa15.23■□□□□ 0.03
NUP54-203ENST00000504173 IQGAP1P46940 1657 aa15.22■□□□□ 0.03
NUP54-203ENST00000504173 RTEL1-TNFRSF6BF6WH68 1400 aa15.22■□□□□ 0.03
NUP54-203ENST00000504173 TNRQ92752 1358 aa15.22■□□□□ 0.03
NUP54-203ENST00000504173 THEMISQ8N1K5 641 aaPredicted RBP15.21■□□□□ 0.03
NUP54-203ENST00000504173 CHIC2Q9UKJ5 165 aa15.2■□□□□ 0.02
NUP54-203ENST00000504173 A2MP01023 1474 aa15.2■□□□□ 0.02
NUP54-203ENST00000504173 GGT6Q6P531 493 aa15.18■□□□□ 0.02
NUP54-203ENST00000504173 NLRP1Q9C000 1473 aa15.18■□□□□ 0.02
NUP54-203ENST00000504173 ADGBQ8N7X0 1667 aa15.17■□□□□ 0.02
NUP54-203ENST00000504173 PZPP20742 1482 aa15.17■□□□□ 0.02
NUP54-203ENST00000504173 ANKRD30AQ9BXX3 1397 aa15.17■□□□□ 0.02
NUP54-203ENST00000504173 FAM135AQ9P2D6 1515 aa15.17■□□□□ 0.02
NUP54-203ENST00000504173 UGGT1Q9NYU2 1555 aa15.16■□□□□ 0.02
NUP54-203ENST00000504173 ADGRL2O95490 1459 aa15.15■□□□□ 0.02
NUP54-203ENST00000504173 KIF15Q9NS87 1388 aa15.14■□□□□ 0.01
NUP54-203ENST00000504173 RRP7BPQ9NSQ0 103 aa15.14■□□□□ 0.01
NUP54-203ENST00000504173 CDK12Q9NYV4 1490 aaPredicted RBP15.14■□□□□ 0.01
NUP54-203ENST00000504173 ROCK1Q13464 1354 aa15.13■□□□□ 0.01
NUP54-203ENST00000504173 KDM5DQ9BY66 1539 aa15.13■□□□□ 0.01
NUP54-203ENST00000504173 FBXO31Q5XUX0 539 aaPredicted RBP15.13■□□□□ 0.01
NUP54-203ENST00000504173 XIRP1Q702N8 1843 aaKnown RBP15.13■□□□□ 0.01
NUP54-203ENST00000504173 ZNF772Q68DY9 489 aaPredicted RBP15.12■□□□□ 0.01
NUP54-203ENST00000504173 ZC3H13Q5T200 1668 aaKnown RBP15.12■□□□□ 0.01
NUP54-203ENST00000504173 DUOX2Q9NRD8 1548 aa15.12■□□□□ 0.01
NUP54-203ENST00000504173 DHX29Q7Z478 1369 aaKnown RBP15.11■□□□□ 0.01
NUP54-203ENST00000504173 JCADQ9P266 1359 aa15.11■□□□□ 0.01
NUP54-203ENST00000504173 ROBO1Q9Y6N7 1651 aa15.11■□□□□ 0.01
NUP54-203ENST00000504173 TRIM52Q96A61 297 aa15.1■□□□□ 0.01
NUP54-203ENST00000504173 ERBINQ96RT1 1412 aa15.08■□□□□ 0
NUP54-203ENST00000504173 TRIM26Q12899 539 aaPredicted RBP15.07■□□□□ 0
NUP54-203ENST00000504173 ANKRD50Q9ULJ7 1429 aa15.07■□□□□ 0
NUP54-203ENST00000504173 KIF3BO15066 747 aa15.06■□□□□ 0
NUP54-203ENST00000504173 EIF2AK4Q9P2K8 1649 aaKnown RBP15.06■□□□□ 0
NUP54-203ENST00000504173 RXRBP28702 533 aa15.05■□□□□ -0
NUP54-203ENST00000504173 LRP6O75581 1613 aa15.05■□□□□ -0
NUP54-203ENST00000504173 HFM1A2PYH4 1435 aa15.04■□□□□ -0
NUP54-203ENST00000504173 NAIPQ13075 1403 aa15.04■□□□□ -0
NUP54-203ENST00000504173 SPATA31A6Q5VVP1 1343 aa15.04■□□□□ -0
NUP54-203ENST00000504173 GCC2Q8IWJ2 1684 aa15.03■□□□□ -0
NUP54-203ENST00000504173 SCAF11Q99590 1463 aaKnown RBP15.02■□□□□ -0
NUP54-203ENST00000504173 TMEM94Q12767 1356 aa15.01□□□□□ -0.01
NUP54-203ENST00000504173 FOXD1Q16676 465 aa15.01□□□□□ -0.01
NUP54-203ENST00000504173 PHLPP1O60346 1717 aa15□□□□□ -0.01
NUP54-203ENST00000504173 COL16A1Q07092 1604 aaPredicted RBP14.99□□□□□ -0.01
NUP54-203ENST00000504173 ZRANB1Q9UGI0 708 aa14.99□□□□□ -0.01
NUP54-203ENST00000504173 ARHGAP23Q9P227 1491 aa14.98□□□□□ -0.01
NUP54-203ENST00000504173 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.98□□□□□ -0.01
NUP54-203ENST00000504173 SETD5Q9C0A6 1442 aa14.98□□□□□ -0.01
NUP54-203ENST00000504173 MROH1Q8NDA8 1641 aa14.97□□□□□ -0.01
NUP54-203ENST00000504173 MEX3CQ5U5Q3 659 aaKnown RBP14.97□□□□□ -0.01
NUP54-203ENST00000504173 SETBP1Q9Y6X0 1596 aa14.97□□□□□ -0.01
NUP54-203ENST00000504173 SLIT1O75093 1534 aa14.97□□□□□ -0.01
NUP54-203ENST00000504173 PRDM15P57071 1507 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms