RNA–Protein interactions for RNA: ENST00000495677.1

COL1A1-209, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 594 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-209ENST00000495677 MTUS2Q5JR59 1369 aa21.87■■□□□ 1.09
COL1A1-209ENST00000495677 TIAM1Q13009 1591 aa21.87■■□□□ 1.09
COL1A1-209ENST00000495677 MED1Q15648 1581 aaPredicted RBP21.87■■□□□ 1.09
COL1A1-209ENST00000495677 HSPA1LP34931 641 aa21.86■■□□□ 1.09
COL1A1-209ENST00000495677 PZPP20742 1482 aa21.85■■□□□ 1.09
COL1A1-209ENST00000495677 TNRQ92752 1358 aa21.85■■□□□ 1.09
COL1A1-209ENST00000495677 ZNF644Q9H582 1327 aaPredicted RBP21.84■■□□□ 1.09
COL1A1-209ENST00000495677 DEPDC5O75140 1603 aa21.84■■□□□ 1.09
COL1A1-209ENST00000495677 RSPH4AQ5TD94 716 aa21.83■■□□□ 1.09
COL1A1-209ENST00000495677 MED14O60244 1454 aa21.83■■□□□ 1.08
COL1A1-209ENST00000495677 KDM5DQ9BY66 1539 aa21.82■■□□□ 1.08
COL1A1-209ENST00000495677 FBXO31Q5XUX0 539 aaPredicted RBP21.82■■□□□ 1.08
COL1A1-209ENST00000495677 ANKLE2Q86XL3 938 aa21.82■■□□□ 1.08
COL1A1-209ENST00000495677 THEMISQ8N1K5 641 aaPredicted RBP21.82■■□□□ 1.08
COL1A1-209ENST00000495677 VWDEQ8N2E2 1590 aa21.82■■□□□ 1.08
COL1A1-209ENST00000495677 EHBP1L1Q8N3D4 1523 aa21.8■■□□□ 1.08
COL1A1-209ENST00000495677 KIF3BO15066 747 aa21.8■■□□□ 1.08
COL1A1-209ENST00000495677 PIP4K2BP78356 416 aa21.8■■□□□ 1.08
COL1A1-209ENST00000495677 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
COL1A1-209ENST00000495677 NLRP1Q9C000 1473 aa21.79■■□□□ 1.08
COL1A1-209ENST00000495677 MIA2Q96PC5 1412 aa21.79■■□□□ 1.08
COL1A1-209ENST00000495677 SCAF1Q9H7N4 1312 aaKnown RBP21.78■■□□□ 1.08
COL1A1-209ENST00000495677 ALKQ9UM73 1620 aa21.77■■□□□ 1.08
COL1A1-209ENST00000495677 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.77■■□□□ 1.08
COL1A1-209ENST00000495677 UGGT1Q9NYU2 1555 aa21.77■■□□□ 1.08
COL1A1-209ENST00000495677 WASHC2CQ9Y4E1 1318 aa21.77■■□□□ 1.07
COL1A1-209ENST00000495677 CCDC141Q6ZP82 1450 aa21.76■■□□□ 1.07
COL1A1-209ENST00000495677 IQGAP1P46940 1657 aa21.75■■□□□ 1.07
COL1A1-209ENST00000495677 NPHP4O75161 1426 aaPredicted RBP21.74■■□□□ 1.07
COL1A1-209ENST00000495677 STRCP1A6NGW2 1772 aa21.74■■□□□ 1.07
COL1A1-209ENST00000495677 ARHGEF5Q12774 1597 aa21.7■■□□□ 1.06
COL1A1-209ENST00000495677 ZC3H13Q5T200 1668 aaKnown RBP21.69■■□□□ 1.06
COL1A1-209ENST00000495677 CFAP65Q6ZU64 1925 aaKnown RBP21.69■■□□□ 1.06
COL1A1-209ENST00000495677 CAMSAP2Q08AD1 1489 aa21.69■■□□□ 1.06
COL1A1-209ENST00000495677 RNF17Q9BXT8 1623 aaKnown RBP21.68■■□□□ 1.06
COL1A1-209ENST00000495677 SYNMO15061 1565 aa21.67■■□□□ 1.06
COL1A1-209ENST00000495677 LRRC7Q96NW7 1537 aa21.66■■□□□ 1.06
COL1A1-209ENST00000495677 TSPY4P0CV99 314 aa21.66■■□□□ 1.06
COL1A1-209ENST00000495677 TSPY10P0CW01 314 aa21.66■■□□□ 1.06
COL1A1-209ENST00000495677 NCOA2Q15596 1464 aa21.65■■□□□ 1.06
COL1A1-209ENST00000495677 PHF23Q9BUL5 403 aaPredicted RBP21.65■■□□□ 1.06
COL1A1-209ENST00000495677 EIF2AK4Q9P2K8 1649 aaKnown RBP21.62■■□□□ 1.05
COL1A1-209ENST00000495677 UBR1Q8IWV7 1749 aa21.62■■□□□ 1.05
COL1A1-209ENST00000495677 MAST1Q9Y2H9 1570 aa21.61■■□□□ 1.05
COL1A1-209ENST00000495677 ABCC3O15438 1527 aa21.61■■□□□ 1.05
COL1A1-209ENST00000495677 XIRP1Q702N8 1843 aaKnown RBP21.61■■□□□ 1.05
COL1A1-209ENST00000495677 ERVK-7P63135 1459 aa21.58■■□□□ 1.05
COL1A1-209ENST00000495677 MROH1Q8NDA8 1641 aa21.56■■□□□ 1.04
COL1A1-209ENST00000495677 CEP152O94986 1710 aa21.56■■□□□ 1.04
COL1A1-209ENST00000495677 SLIT1O75093 1534 aa21.55■■□□□ 1.04
COL1A1-209ENST00000495677 ARHGAP23Q9P227 1491 aa21.54■■□□□ 1.04
COL1A1-209ENST00000495677 SCAF11Q99590 1463 aaKnown RBP21.53■■□□□ 1.04
COL1A1-209ENST00000495677 RGS17Q9UGC6 210 aaPredicted RBP21.52■■□□□ 1.04
COL1A1-209ENST00000495677 ARHGAP31Q2M1Z3 1444 aa21.5■■□□□ 1.03
COL1A1-209ENST00000495677 LTKP29376 864 aa21.49■■□□□ 1.03
COL1A1-209ENST00000495677 KDM5AP29375 1690 aaKnown RBP21.48■■□□□ 1.03
COL1A1-209ENST00000495677 TXNDC2Q86VQ3 553 aa21.48■■□□□ 1.03
COL1A1-209ENST00000495677 FAM135BQ49AJ0 1406 aa21.47■■□□□ 1.03
COL1A1-209ENST00000495677 DUOX2Q9NRD8 1548 aa21.47■■□□□ 1.03
COL1A1-209ENST00000495677 LRRC9Q6ZRR7 1453 aa21.46■■□□□ 1.03
COL1A1-209ENST00000495677 EID1Q9Y6B2 187 aa21.44■■□□□ 1.02
COL1A1-209ENST00000495677 PRDM15P57071 1507 aaPredicted RBP21.43■■□□□ 1.02
COL1A1-209ENST00000495677 PIK3C2BO00750 1634 aa21.42■■□□□ 1.02
COL1A1-209ENST00000495677 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
COL1A1-209ENST00000495677 MYOM3Q5VTT5 1437 aa21.41■■□□□ 1.02
COL1A1-209ENST00000495677 MAP3K1Q13233 1512 aa21.4■■□□□ 1.02
COL1A1-209ENST00000495677 TMEM2Q9UHN6 1383 aa21.39■■□□□ 1.02
COL1A1-209ENST00000495677 ERBINQ96RT1 1412 aa21.38■■□□□ 1.01
COL1A1-209ENST00000495677 TET3O43151 1660 aa21.37■■□□□ 1.01
COL1A1-209ENST00000495677 ROBO1Q9Y6N7 1651 aa21.37■■□□□ 1.01
COL1A1-209ENST00000495677 KCNA6P17658 529 aa21.36■■□□□ 1.01
COL1A1-209ENST00000495677 CROCC2H7BZ55 1655 aa21.36■■□□□ 1.01
COL1A1-209ENST00000495677 VPS8Q8N3P4 1428 aa21.36■■□□□ 1.01
COL1A1-209ENST00000495677 POTEAQ6S8J7 498 aa21.34■■□□□ 1.01
COL1A1-209ENST00000495677 TMEM94Q12767 1356 aa21.34■■□□□ 1.01
COL1A1-209ENST00000495677 KIF15Q9NS87 1388 aa21.34■■□□□ 1.01
COL1A1-209ENST00000495677 EFCAB6Q5THR3 1501 aa21.33■■□□□ 1
COL1A1-209ENST00000495677 KANK4Q5T7N3 995 aaPredicted RBP21.32■■□□□ 1
COL1A1-209ENST00000495677 LMTK2Q8IWU2 1503 aa21.32■■□□□ 1
COL1A1-209ENST00000495677 IDI1Q13907 227 aa21.31■■□□□ 1
COL1A1-209ENST00000495677 STAG3Q9UJ98 1225 aa21.3■■□□□ 1
COL1A1-209ENST00000495677 NWD1Q149M9 1564 aa21.29■■□□□ 1
COL1A1-209ENST00000495677 KANK1Q14678 1352 aa21.29■■□□□ 1
COL1A1-209ENST00000495677 PROSER2Q86WR7 435 aaPredicted RBP21.29■■□□□ 1
COL1A1-209ENST00000495677 CHD2O14647 1828 aaKnown RBP21.29■■□□□ 1
COL1A1-209ENST00000495677 ABCC5O15440 1437 aa21.29■■□□□ 1
COL1A1-209ENST00000495677 NKTRP30414 1462 aaKnown RBP21.28■■□□□ 1
COL1A1-209ENST00000495677 RRP7BPQ9NSQ0 103 aa21.27■■□□□ 1
COL1A1-209ENST00000495677 PHLPP1O60346 1717 aa21.26■□□□□ 0.99
COL1A1-209ENST00000495677 PTPN23Q9H3S7 1636 aa21.26■□□□□ 0.99
COL1A1-209ENST00000495677 NOS1P29475 1434 aa21.25■□□□□ 0.99
COL1A1-209ENST00000495677 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.25■□□□□ 0.99
COL1A1-209ENST00000495677 SLC26A8Q96RN1 970 aa21.24■□□□□ 0.99
COL1A1-209ENST00000495677 SLC52A1Q9NWF4 448 aa21.23■□□□□ 0.99
COL1A1-209ENST00000495677 DAPK1P53355 1430 aa21.22■□□□□ 0.99
COL1A1-209ENST00000495677 SLAIN2Q9P270 581 aa21.22■□□□□ 0.99
COL1A1-209ENST00000495677 ADGRB3O60242 1522 aa21.22■□□□□ 0.99
COL1A1-209ENST00000495677 MYO5BQ9ULV0 1848 aa21.22■□□□□ 0.99
COL1A1-209ENST00000495677 MSH6P52701 1360 aa21.22■□□□□ 0.99
COL1A1-209ENST00000495677 JCADQ9P266 1359 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms