RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 CEBPAP49715 358 aaPredicted RBP29.47■■■□□ 2.31
HDAC4-212ENST00000495497 EIF2AK4Q9P2K8 1649 aaKnown RBP29.44■■■□□ 2.3
HDAC4-212ENST00000495497 ANKRD50Q9ULJ7 1429 aa29.43■■■□□ 2.3
HDAC4-212ENST00000495497 PPP6R1Q9UPN7 881 aa29.42■■■□□ 2.3
HDAC4-212ENST00000495497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.41■■■□□ 2.3
HDAC4-212ENST00000495497 CNTLNQ9NXG0 1405 aa29.4■■■□□ 2.3
HDAC4-212ENST00000495497 RNF17Q9BXT8 1623 aaKnown RBP29.4■■■□□ 2.3
HDAC4-212ENST00000495497 WASHC2CQ9Y4E1 1318 aa29.4■■■□□ 2.3
HDAC4-212ENST00000495497 CLTCQ00610 1675 aaKnown RBP29.38■■■□□ 2.29
HDAC4-212ENST00000495497 MROH1Q8NDA8 1641 aa29.38■■■□□ 2.29
HDAC4-212ENST00000495497 ZMYM3Q14202 1370 aa29.37■■■□□ 2.29
HDAC4-212ENST00000495497 KDM5DQ9BY66 1539 aa29.34■■■□□ 2.29
HDAC4-212ENST00000495497 NAIPQ13075 1403 aa29.32■■■□□ 2.28
HDAC4-212ENST00000495497 C3P01024 1663 aa29.31■■■□□ 2.28
HDAC4-212ENST00000495497 ABCC3O15438 1527 aa29.3■■■□□ 2.28
HDAC4-212ENST00000495497 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
HDAC4-212ENST00000495497 DEPDC5O75140 1603 aa29.29■■■□□ 2.28
HDAC4-212ENST00000495497 MROH2AA6NES4 1674 aa29.28■■■□□ 2.28
HDAC4-212ENST00000495497 HFM1A2PYH4 1435 aa29.27■■■□□ 2.28
HDAC4-212ENST00000495497 KANK1Q14678 1352 aa29.26■■■□□ 2.28
HDAC4-212ENST00000495497 FAM135AQ9P2D6 1515 aa29.26■■■□□ 2.27
HDAC4-212ENST00000495497 FBXO31Q5XUX0 539 aaPredicted RBP29.24■■■□□ 2.27
HDAC4-212ENST00000495497 CEP152O94986 1710 aa29.23■■■□□ 2.27
HDAC4-212ENST00000495497 VWDEQ8N2E2 1590 aa29.21■■■□□ 2.27
HDAC4-212ENST00000495497 GCC2Q8IWJ2 1684 aa29.21■■■□□ 2.27
HDAC4-212ENST00000495497 ZC3H13Q5T200 1668 aaKnown RBP29.2■■■□□ 2.26
HDAC4-212ENST00000495497 UNC13BO14795 1591 aa29.18■■■□□ 2.26
HDAC4-212ENST00000495497 PZPP20742 1482 aa29.18■■■□□ 2.26
HDAC4-212ENST00000495497 NUP155O75694 1391 aa29.18■■■□□ 2.26
HDAC4-212ENST00000495497 CAMSAP1Q5T5Y3 1602 aa29.16■■■□□ 2.26
HDAC4-212ENST00000495497 LMTK2Q8IWU2 1503 aa29.15■■■□□ 2.26
HDAC4-212ENST00000495497 NPATQ14207 1427 aa29.15■■■□□ 2.26
HDAC4-212ENST00000495497 TRIM52Q96A61 297 aa29.12■■■□□ 2.25
HDAC4-212ENST00000495497 ARHGAP31Q2M1Z3 1444 aa29.11■■■□□ 2.25
HDAC4-212ENST00000495497 LMTK3Q96Q04 1460 aa29.1■■■□□ 2.25
HDAC4-212ENST00000495497 TNRQ92752 1358 aa29.1■■■□□ 2.25
HDAC4-212ENST00000495497 SETD5Q9C0A6 1442 aa29.1■■■□□ 2.25
HDAC4-212ENST00000495497 HSPA2P54652 639 aa29.08■■■□□ 2.25
HDAC4-212ENST00000495497 UHRF1BP1Q6BDS2 1440 aa29.08■■■□□ 2.25
HDAC4-212ENST00000495497 ERVK-7P63135 1459 aa29.07■■■□□ 2.24
HDAC4-212ENST00000495497 IQGAP3Q86VI3 1631 aa29.07■■■□□ 2.24
HDAC4-212ENST00000495497 PREX1Q8TCU6 1659 aa29.06■■■□□ 2.24
HDAC4-212ENST00000495497 EFCAB6Q5THR3 1501 aa29.06■■■□□ 2.24
HDAC4-212ENST00000495497 SETD1BQ9UPS6 1966 aaKnown RBP29.04■■■□□ 2.24
HDAC4-212ENST00000495497 TET3O43151 1660 aa29.03■■■□□ 2.24
HDAC4-212ENST00000495497 CFAP65Q6ZU64 1925 aaKnown RBP29.03■■■□□ 2.24
HDAC4-212ENST00000495497 SPATA31D1Q6ZQQ2 1576 aa29.03■■■□□ 2.24
HDAC4-212ENST00000495497 RAB3GAP2Q9H2M9 1393 aa29.02■■■□□ 2.24
HDAC4-212ENST00000495497 MYO3AQ8NEV4 1616 aa29■■■□□ 2.23
HDAC4-212ENST00000495497 TRIM26Q12899 539 aaPredicted RBP28.97■■■□□ 2.23
HDAC4-212ENST00000495497 E9PCH4 1651 aa28.96■■■□□ 2.23
HDAC4-212ENST00000495497 SLC4A1APQ9BWU0 796 aaKnown RBP28.95■■■□□ 2.22
HDAC4-212ENST00000495497 RPRD2Q5VT52 1461 aaKnown RBP28.95■■■□□ 2.22
HDAC4-212ENST00000495497 NOS1P29475 1434 aa28.94■■■□□ 2.22
HDAC4-212ENST00000495497 CEP170BQ9Y4F5 1589 aaPredicted RBP28.94■■■□□ 2.22
HDAC4-212ENST00000495497 A2ML1A8K2U0 1454 aa28.94■■■□□ 2.22
HDAC4-212ENST00000495497 PKD2Q13563 968 aa28.93■■■□□ 2.22
HDAC4-212ENST00000495497 NLRP1Q9C000 1473 aa28.92■■■□□ 2.22
HDAC4-212ENST00000495497 SYNMO15061 1565 aa28.91■■■□□ 2.22
HDAC4-212ENST00000495497 IDI1Q13907 227 aa28.9■■■□□ 2.22
HDAC4-212ENST00000495497 MPHOSPH9Q99550 1183 aa28.89■■■□□ 2.22
HDAC4-212ENST00000495497 ZNF142P52746 1687 aaPredicted RBP28.89■■■□□ 2.21
HDAC4-212ENST00000495497 FOXD1Q16676 465 aa28.88■■■□□ 2.21
HDAC4-212ENST00000495497 UGGT1Q9NYU2 1555 aa28.84■■■□□ 2.21
HDAC4-212ENST00000495497 HRCP23327 699 aa28.84■■■□□ 2.21
HDAC4-212ENST00000495497 SLC52A1Q9NWF4 448 aa28.84■■■□□ 2.21
HDAC4-212ENST00000495497 ACIN1Q9UKV3 1341 aaKnown RBP28.83■■■□□ 2.21
HDAC4-212ENST00000495497 PTPRTO14522 1441 aa28.81■■■□□ 2.2
HDAC4-212ENST00000495497 THEMISQ8N1K5 641 aaPredicted RBP28.81■■■□□ 2.2
HDAC4-212ENST00000495497 STAG3Q9UJ98 1225 aa28.81■■■□□ 2.2
HDAC4-212ENST00000495497 PIK3C2BO00750 1634 aa28.8■■■□□ 2.2
HDAC4-212ENST00000495497 NCKAP5LQ9HCH0 1330 aa28.8■■■□□ 2.2
HDAC4-212ENST00000495497 PLA2R1Q13018 1463 aa28.78■■■□□ 2.2
HDAC4-212ENST00000495497 CHGAP10645 457 aaKnown RBP28.76■■■□□ 2.19
HDAC4-212ENST00000495497 SPHKAPQ2M3C7 1700 aa28.75■■■□□ 2.19
HDAC4-212ENST00000495497 UBR1Q8IWV7 1749 aa28.75■■■□□ 2.19
HDAC4-212ENST00000495497 STRCQ7RTU9 1775 aa28.73■■■□□ 2.19
HDAC4-212ENST00000495497 ADGRB3O60242 1522 aa28.71■■■□□ 2.19
HDAC4-212ENST00000495497 TRPM2O94759 1503 aa28.7■■■□□ 2.19
HDAC4-212ENST00000495497 ANKLE2Q86XL3 938 aa28.69■■■□□ 2.18
HDAC4-212ENST00000495497 CLTCL1P53675 1640 aa28.67■■■□□ 2.18
HDAC4-212ENST00000495497 TMEM2Q9UHN6 1383 aa28.66■■■□□ 2.18
HDAC4-212ENST00000495497 LTKP29376 864 aa28.66■■■□□ 2.18
HDAC4-212ENST00000495497 PCGF6Q9BYE7 350 aa28.66■■■□□ 2.18
HDAC4-212ENST00000495497 ARHGAP23Q9P227 1491 aa28.65■■■□□ 2.18
HDAC4-212ENST00000495497 TMEM131LA2VDJ0 1609 aa28.65■■■□□ 2.18
HDAC4-212ENST00000495497 TXNDC2Q86VQ3 553 aa28.64■■■□□ 2.18
HDAC4-212ENST00000495497 DMRT2Q9Y5R5 561 aa28.63■■■□□ 2.17
HDAC4-212ENST00000495497 SLIT1O75093 1534 aa28.63■■■□□ 2.17
HDAC4-212ENST00000495497 KDM5AP29375 1690 aaKnown RBP28.62■■■□□ 2.17
HDAC4-212ENST00000495497 MYO5BQ9ULV0 1848 aa28.6■■■□□ 2.17
HDAC4-212ENST00000495497 NEURL4Q96JN8 1562 aa28.6■■■□□ 2.17
HDAC4-212ENST00000495497 EID1Q9Y6B2 187 aa28.6■■■□□ 2.17
HDAC4-212ENST00000495497 ZNF326Q5BKZ1 582 aaKnown RBP28.59■■■□□ 2.17
HDAC4-212ENST00000495497 NUTM2DQ5VT03 806 aaPredicted RBP28.59■■■□□ 2.17
HDAC4-212ENST00000495497 CCDC144AA2RUR9 1427 aa28.59■■■□□ 2.17
HDAC4-212ENST00000495497 RIMS2Q9UQ26 1411 aa28.58■■■□□ 2.17
HDAC4-212ENST00000495497 SCAF11Q99590 1463 aaKnown RBP28.58■■■□□ 2.17
HDAC4-212ENST00000495497 SENP3Q9H4L4 574 aaPredicted RBP28.57■■■□□ 2.16
HDAC4-212ENST00000495497 ANKRD30BQ9BXX2 1392 aa28.57■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms