RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 NCOA1Q15788 1441 aa24.31■■□□□ 1.48
LIME1-209ENST00000494776 MROH2AA6NES4 1674 aa24.3■■□□□ 1.48
LIME1-209ENST00000494776 ERBINQ96RT1 1412 aa24.3■■□□□ 1.48
LIME1-209ENST00000494776 EIF2AK4Q9P2K8 1649 aaKnown RBP24.3■■□□□ 1.48
LIME1-209ENST00000494776 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.29■■□□□ 1.48
LIME1-209ENST00000494776 ADGRL2O95490 1459 aa24.28■■□□□ 1.48
LIME1-209ENST00000494776 KDM5DQ9BY66 1539 aa24.27■■□□□ 1.48
LIME1-209ENST00000494776 LMTK3Q96Q04 1460 aa24.26■■□□□ 1.47
LIME1-209ENST00000494776 PTPRKQ15262 1439 aa24.26■■□□□ 1.47
LIME1-209ENST00000494776 RRBP1Q9P2E9 1410 aaKnown RBP24.26■■□□□ 1.47
LIME1-209ENST00000494776 RNF17Q9BXT8 1623 aaKnown RBP24.25■■□□□ 1.47
LIME1-209ENST00000494776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.25■■□□□ 1.47
LIME1-209ENST00000494776 UHRF1BP1Q6BDS2 1440 aa24.25■■□□□ 1.47
LIME1-209ENST00000494776 FAM135AQ9P2D6 1515 aa24.25■■□□□ 1.47
LIME1-209ENST00000494776 PREX1Q8TCU6 1659 aa24.22■■□□□ 1.47
LIME1-209ENST00000494776 NPATQ14207 1427 aa24.22■■□□□ 1.47
LIME1-209ENST00000494776 HSPA2P54652 639 aa24.22■■□□□ 1.47
LIME1-209ENST00000494776 SETD1BQ9UPS6 1966 aaKnown RBP24.2■■□□□ 1.46
LIME1-209ENST00000494776 ROCK1Q13464 1354 aa24.2■■□□□ 1.46
LIME1-209ENST00000494776 KANK1Q14678 1352 aa24.2■■□□□ 1.46
LIME1-209ENST00000494776 ANKRD50Q9ULJ7 1429 aa24.19■■□□□ 1.46
LIME1-209ENST00000494776 ABCC3O15438 1527 aa24.17■■□□□ 1.46
LIME1-209ENST00000494776 MROH1Q8NDA8 1641 aa24.17■■□□□ 1.46
LIME1-209ENST00000494776 ZC3H13Q5T200 1668 aaKnown RBP24.16■■□□□ 1.46
LIME1-209ENST00000494776 FBXO31Q5XUX0 539 aaPredicted RBP24.16■■□□□ 1.46
LIME1-209ENST00000494776 PZPP20742 1482 aa24.15■■□□□ 1.46
LIME1-209ENST00000494776 PRDM15P57071 1507 aaPredicted RBP24.15■■□□□ 1.46
LIME1-209ENST00000494776 ILDR1Q86SU0 546 aaPredicted RBP24.12■■□□□ 1.45
LIME1-209ENST00000494776 DEPDC5O75140 1603 aa24.12■■□□□ 1.45
LIME1-209ENST00000494776 CEP152O94986 1710 aa24.12■■□□□ 1.45
LIME1-209ENST00000494776 TNRQ92752 1358 aa24.11■■□□□ 1.45
LIME1-209ENST00000494776 CAMSAP1Q5T5Y3 1602 aa24.08■■□□□ 1.45
LIME1-209ENST00000494776 MYO3AQ8NEV4 1616 aa24.06■■□□□ 1.44
LIME1-209ENST00000494776 CEP170BQ9Y4F5 1589 aaPredicted RBP24.03■■□□□ 1.44
LIME1-209ENST00000494776 ARHGAP31Q2M1Z3 1444 aa24.02■■□□□ 1.44
LIME1-209ENST00000494776 VWDEQ8N2E2 1590 aa24.02■■□□□ 1.44
LIME1-209ENST00000494776 ERVK-7P63135 1459 aa24.01■■□□□ 1.43
LIME1-209ENST00000494776 LMTK2Q8IWU2 1503 aa24.01■■□□□ 1.43
LIME1-209ENST00000494776 A2ML1A8K2U0 1454 aa24■■□□□ 1.43
LIME1-209ENST00000494776 SPATA31D1Q6ZQQ2 1576 aa23.99■■□□□ 1.43
LIME1-209ENST00000494776 ZNF142P52746 1687 aaPredicted RBP23.99■■□□□ 1.43
LIME1-209ENST00000494776 NLRP1Q9C000 1473 aa23.99■■□□□ 1.43
LIME1-209ENST00000494776 UNC13BO14795 1591 aa23.99■■□□□ 1.43
LIME1-209ENST00000494776 CFAP65Q6ZU64 1925 aaKnown RBP23.98■■□□□ 1.43
LIME1-209ENST00000494776 DMRT2Q9Y5R5 561 aa23.98■■□□□ 1.43
LIME1-209ENST00000494776 NUP155O75694 1391 aa23.98■■□□□ 1.43
LIME1-209ENST00000494776 NAIPQ13075 1403 aa23.97■■□□□ 1.43
LIME1-209ENST00000494776 EFCAB6Q5THR3 1501 aa23.94■■□□□ 1.42
LIME1-209ENST00000494776 THEMISQ8N1K5 641 aaPredicted RBP23.94■■□□□ 1.42
LIME1-209ENST00000494776 FBXO41Q8TF61 875 aa23.94■■□□□ 1.42
LIME1-209ENST00000494776 HFM1A2PYH4 1435 aa23.93■■□□□ 1.42
LIME1-209ENST00000494776 UGGT1Q9NYU2 1555 aa23.92■■□□□ 1.42
LIME1-209ENST00000494776 GCC2Q8IWJ2 1684 aa23.92■■□□□ 1.42
LIME1-209ENST00000494776 STRCQ7RTU9 1775 aa23.91■■□□□ 1.42
LIME1-209ENST00000494776 NCKAP5LQ9HCH0 1330 aa23.91■■□□□ 1.42
LIME1-209ENST00000494776 TET3O43151 1660 aa23.91■■□□□ 1.42
LIME1-209ENST00000494776 PLA2R1Q13018 1463 aa23.9■■□□□ 1.42
LIME1-209ENST00000494776 RPRD2Q5VT52 1461 aaKnown RBP23.9■■□□□ 1.42
LIME1-209ENST00000494776 PKD2Q13563 968 aa23.9■■□□□ 1.42
LIME1-209ENST00000494776 TRIM52Q96A61 297 aa23.9■■□□□ 1.42
LIME1-209ENST00000494776 STAG3Q9UJ98 1225 aa23.9■■□□□ 1.42
LIME1-209ENST00000494776 IQGAP3Q86VI3 1631 aa23.89■■□□□ 1.42
LIME1-209ENST00000494776 ANKLE2Q86XL3 938 aa23.86■■□□□ 1.41
LIME1-209ENST00000494776 PTPRTO14522 1441 aa23.85■■□□□ 1.41
LIME1-209ENST00000494776 NOS1P29475 1434 aa23.85■■□□□ 1.41
LIME1-209ENST00000494776 IDI1Q13907 227 aa23.84■■□□□ 1.41
LIME1-209ENST00000494776 SLC52A1Q9NWF4 448 aa23.84■■□□□ 1.41
LIME1-209ENST00000494776 SYNMO15061 1565 aa23.82■■□□□ 1.4
LIME1-209ENST00000494776 E9PCH4 1651 aa23.81■■□□□ 1.4
LIME1-209ENST00000494776 CERKQ8TCT0 537 aa23.8■■□□□ 1.4
LIME1-209ENST00000494776 PIK3C2BO00750 1634 aa23.79■■□□□ 1.4
LIME1-209ENST00000494776 UBR1Q8IWV7 1749 aa23.79■■□□□ 1.4
LIME1-209ENST00000494776 SLC4A1APQ9BWU0 796 aaKnown RBP23.77■■□□□ 1.4
LIME1-209ENST00000494776 CHGAP10645 457 aaKnown RBP23.76■■□□□ 1.39
LIME1-209ENST00000494776 EID1Q9Y6B2 187 aa23.76■■□□□ 1.39
LIME1-209ENST00000494776 SETD5Q9C0A6 1442 aa23.76■■□□□ 1.39
LIME1-209ENST00000494776 POLR1AO95602 1720 aaPredicted RBP23.75■■□□□ 1.39
LIME1-209ENST00000494776 TXNDC2Q86VQ3 553 aa23.74■■□□□ 1.39
LIME1-209ENST00000494776 ACIN1Q9UKV3 1341 aaKnown RBP23.72■■□□□ 1.39
LIME1-209ENST00000494776 TMEM2Q9UHN6 1383 aa23.72■■□□□ 1.39
LIME1-209ENST00000494776 ADGRB3O60242 1522 aa23.71■■□□□ 1.39
LIME1-209ENST00000494776 NPHP4O75161 1426 aaPredicted RBP23.71■■□□□ 1.39
LIME1-209ENST00000494776 SLIT1O75093 1534 aa23.7■■□□□ 1.38
LIME1-209ENST00000494776 KDM5AP29375 1690 aaKnown RBP23.7■■□□□ 1.38
LIME1-209ENST00000494776 NEURL4Q96JN8 1562 aa23.69■■□□□ 1.38
LIME1-209ENST00000494776 SCAF11Q99590 1463 aaKnown RBP23.69■■□□□ 1.38
LIME1-209ENST00000494776 LTKP29376 864 aa23.69■■□□□ 1.38
LIME1-209ENST00000494776 ARHGAP23Q9P227 1491 aa23.68■■□□□ 1.38
LIME1-209ENST00000494776 MED14O60244 1454 aa23.68■■□□□ 1.38
LIME1-209ENST00000494776 SPHKAPQ2M3C7 1700 aa23.67■■□□□ 1.38
LIME1-209ENST00000494776 RAB3GAP2Q9H2M9 1393 aa23.66■■□□□ 1.38
LIME1-209ENST00000494776 ZNF335Q9H4Z2 1342 aaPredicted RBP23.66■■□□□ 1.38
LIME1-209ENST00000494776 HDGFP51858 240 aaKnown RBP23.66■■□□□ 1.38
LIME1-209ENST00000494776 MPHOSPH9Q99550 1183 aa23.65■■□□□ 1.38
LIME1-209ENST00000494776 IQGAP1P46940 1657 aa23.64■■□□□ 1.37
LIME1-209ENST00000494776 PPP1R15AO75807 674 aaPredicted RBP23.63■■□□□ 1.37
LIME1-209ENST00000494776 BCANQ96GW7 911 aa23.63■■□□□ 1.37
LIME1-209ENST00000494776 TMEM131LA2VDJ0 1609 aa23.62■■□□□ 1.37
LIME1-209ENST00000494776 FOXD1Q16676 465 aa23.62■■□□□ 1.37
LIME1-209ENST00000494776 RIMS2Q9UQ26 1411 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms