RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 A2ML1A8K2U0 1454 aa15.28■□□□□ 0.04
UBR4-216ENST00000494503 IQSEC2Q5JU85 1478 aa15.28■□□□□ 0.04
UBR4-216ENST00000494503 TSPY4P0CV99 314 aa15.28■□□□□ 0.04
UBR4-216ENST00000494503 TSPY10P0CW01 314 aa15.28■□□□□ 0.04
UBR4-216ENST00000494503 POLR1AO95602 1720 aaPredicted RBP15.28■□□□□ 0.04
UBR4-216ENST00000494503 DNMT1P26358 1616 aaKnown RBP15.28■□□□□ 0.04
UBR4-216ENST00000494503 TNRQ92752 1358 aa15.27■□□□□ 0.04
UBR4-216ENST00000494503 FBXO31Q5XUX0 539 aaPredicted RBP15.27■□□□□ 0.04
UBR4-216ENST00000494503 TCOF1Q13428 1488 aaKnown RBP15.26■□□□□ 0.03
UBR4-216ENST00000494503 RSPH4AQ5TD94 716 aa15.25■□□□□ 0.03
UBR4-216ENST00000494503 ILDR2Q71H61 639 aa15.25■□□□□ 0.03
UBR4-216ENST00000494503 PZPP20742 1482 aa15.23■□□□□ 0.03
UBR4-216ENST00000494503 LOC105371045A0A1W2PR82 267 aa15.23■□□□□ 0.03
UBR4-216ENST00000494503 ARHGEF5Q12774 1597 aa15.23■□□□□ 0.03
UBR4-216ENST00000494503 LRRC9Q6ZRR7 1453 aa15.22■□□□□ 0.03
UBR4-216ENST00000494503 CFAP65Q6ZU64 1925 aaKnown RBP15.22■□□□□ 0.03
UBR4-216ENST00000494503 VPS8Q8N3P4 1428 aa15.22■□□□□ 0.03
UBR4-216ENST00000494503 PIP4K2BP78356 416 aa15.21■□□□□ 0.03
UBR4-216ENST00000494503 FAM135AQ9P2D6 1515 aa15.21■□□□□ 0.03
UBR4-216ENST00000494503 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.21■□□□□ 0.02
UBR4-216ENST00000494503 ANKLE2Q86XL3 938 aa15.2■□□□□ 0.02
UBR4-216ENST00000494503 UGGT1Q9NYU2 1555 aa15.19■□□□□ 0.02
UBR4-216ENST00000494503 THEMISQ8N1K5 641 aaPredicted RBP15.18■□□□□ 0.02
UBR4-216ENST00000494503 NEURL4Q96JN8 1562 aa15.18■□□□□ 0.02
UBR4-216ENST00000494503 MIA2Q96PC5 1412 aa15.17■□□□□ 0.02
UBR4-216ENST00000494503 CEP152O94986 1710 aa15.17■□□□□ 0.02
UBR4-216ENST00000494503 ZC3H13Q5T200 1668 aaKnown RBP15.17■□□□□ 0.02
UBR4-216ENST00000494503 NLRP1Q9C000 1473 aa15.17■□□□□ 0.02
UBR4-216ENST00000494503 SOCS7O14512 581 aa15.17■□□□□ 0.02
UBR4-216ENST00000494503 APLP2Q06481 763 aa15.16■□□□□ 0.02
UBR4-216ENST00000494503 KANK4Q5T7N3 995 aaPredicted RBP15.16■□□□□ 0.02
UBR4-216ENST00000494503 SENP3Q9H4L4 574 aaPredicted RBP15.16■□□□□ 0.02
UBR4-216ENST00000494503 RNF17Q9BXT8 1623 aaKnown RBP15.16■□□□□ 0.02
UBR4-216ENST00000494503 SHANK2Q9UPX8 1470 aa15.15■□□□□ 0.02
UBR4-216ENST00000494503 ABCC3O15438 1527 aa15.15■□□□□ 0.02
UBR4-216ENST00000494503 CPS1P31327 1500 aa15.15■□□□□ 0.02
UBR4-216ENST00000494503 MYOM3Q5VTT5 1437 aa15.15■□□□□ 0.02
UBR4-216ENST00000494503 MAST1Q9Y2H9 1570 aa15.15■□□□□ 0.02
UBR4-216ENST00000494503 EIF2AK4Q9P2K8 1649 aaKnown RBP15.14■□□□□ 0.01
UBR4-216ENST00000494503 IQGAP1P46940 1657 aa15.14■□□□□ 0.01
UBR4-216ENST00000494503 TOM1O60784 492 aa15.14■□□□□ 0.01
UBR4-216ENST00000494503 NPHP4O75161 1426 aaPredicted RBP15.14■□□□□ 0.01
UBR4-216ENST00000494503 HSPA1LP34931 641 aa15.11■□□□□ 0.01
UBR4-216ENST00000494503 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.11■□□□□ 0.015e-8■■■■□ 19.9
UBR4-216ENST00000494503 ERVK-7P63135 1459 aa15.11■□□□□ 0.01
UBR4-216ENST00000494503 DUOX2Q9NRD8 1548 aa15.11■□□□□ 0.01
UBR4-216ENST00000494503 DEPDC5O75140 1603 aa15.1■□□□□ 0.01
UBR4-216ENST00000494503 RRP7BPQ9NSQ0 103 aa15.1■□□□□ 0.01
UBR4-216ENST00000494503 VWDEQ8N2E2 1590 aa15.1■□□□□ 0.01
UBR4-216ENST00000494503 CROCC2H7BZ55 1655 aa15.09■□□□□ 0.01
UBR4-216ENST00000494503 MAP3K1Q13233 1512 aa15.09■□□□□ 0.01
UBR4-216ENST00000494503 KIF15Q9NS87 1388 aa15.09■□□□□ 0.01
UBR4-216ENST00000494503 MROH1Q8NDA8 1641 aa15.08■□□□□ 0
UBR4-216ENST00000494503 PTPN23Q9H3S7 1636 aa15.08■□□□□ 0
UBR4-216ENST00000494503 UBR1Q8IWV7 1749 aa15.07■□□□□ 0
UBR4-216ENST00000494503 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
UBR4-216ENST00000494503 MED14O60244 1454 aa15.07■□□□□ 0
UBR4-216ENST00000494503 PHF23Q9BUL5 403 aaPredicted RBP15.05■□□□□ -0
UBR4-216ENST00000494503 CHIC2Q9UKJ5 165 aa15.05■□□□□ -0
UBR4-216ENST00000494503 MED1Q15648 1581 aaPredicted RBP15.05■□□□□ -0
UBR4-216ENST00000494503 STRCP1A6NGW2 1772 aa15.04■□□□□ -0
UBR4-216ENST00000494503 KANK1Q14678 1352 aa15.04■□□□□ -0
UBR4-216ENST00000494503 PRDM15P57071 1507 aaPredicted RBP15.03■□□□□ -0
UBR4-216ENST00000494503 SCAF11Q99590 1463 aaKnown RBP15.03■□□□□ -0
UBR4-216ENST00000494503 ABCC5O15440 1437 aa15.03■□□□□ -0
UBR4-216ENST00000494503 ERBINQ96RT1 1412 aa15.03■□□□□ -0
UBR4-216ENST00000494503 TXNDC2Q86VQ3 553 aa15.03■□□□□ -0
UBR4-216ENST00000494503 EID1Q9Y6B2 187 aa15.03■□□□□ -0
UBR4-216ENST00000494503 SYNMO15061 1565 aa15.02■□□□□ -0
UBR4-216ENST00000494503 DAPK1P53355 1430 aa15.02■□□□□ -0
UBR4-216ENST00000494503 LRRC7Q96NW7 1537 aa15.01□□□□□ -0.01
UBR4-216ENST00000494503 PIK3C2BO00750 1634 aa15□□□□□ -0.01
UBR4-216ENST00000494503 FGD6Q6ZV73 1430 aa15□□□□□ -0.01
UBR4-216ENST00000494503 ANKRD30AQ9BXX3 1397 aa14.99□□□□□ -0.01
UBR4-216ENST00000494503 BCANQ96GW7 911 aa14.99□□□□□ -0.01
UBR4-216ENST00000494503 LTKP29376 864 aa14.98□□□□□ -0.01
UBR4-216ENST00000494503 FAM50AQ14320 339 aaKnown RBP14.98□□□□□ -0.01
UBR4-216ENST00000494503 ARHGAP31Q2M1Z3 1444 aa14.97□□□□□ -0.01
UBR4-216ENST00000494503 ALKQ9UM73 1620 aa14.96□□□□□ -0.01
UBR4-216ENST00000494503 SLIT1O75093 1534 aa14.96□□□□□ -0.02
UBR4-216ENST00000494503 EFCAB6Q5THR3 1501 aa14.95□□□□□ -0.02
UBR4-216ENST00000494503 ARHGAP23Q9P227 1491 aa14.95□□□□□ -0.02
UBR4-216ENST00000494503 TMEM2Q9UHN6 1383 aa14.94□□□□□ -0.02
UBR4-216ENST00000494503 XIRP1Q702N8 1843 aaKnown RBP14.92□□□□□ -0.02
UBR4-216ENST00000494503 IDI1Q13907 227 aa14.91□□□□□ -0.02
UBR4-216ENST00000494503 SLC26A8Q96RN1 970 aa14.91□□□□□ -0.02
UBR4-216ENST00000494503 RBM33Q96EV2 1170 aaKnown RBP14.9□□□□□ -0.02
UBR4-216ENST00000494503 ADGRB3O60242 1522 aa14.89□□□□□ -0.03
UBR4-216ENST00000494503 LMTK2Q8IWU2 1503 aa14.89□□□□□ -0.03
UBR4-216ENST00000494503 PPP1R15AO75807 674 aaPredicted RBP14.89□□□□□ -0.03
UBR4-216ENST00000494503 KDM5AP29375 1690 aaKnown RBP14.89□□□□□ -0.03
UBR4-216ENST00000494503 MYO5BQ9ULV0 1848 aa14.88□□□□□ -0.03
UBR4-216ENST00000494503 CHGAP10645 457 aaKnown RBP14.88□□□□□ -0.03
UBR4-216ENST00000494503 PROSER2Q86WR7 435 aaPredicted RBP14.88□□□□□ -0.03
UBR4-216ENST00000494503 TMEM94Q12767 1356 aa14.87□□□□□ -0.03
UBR4-216ENST00000494503 ANKRD50Q9ULJ7 1429 aa14.86□□□□□ -0.03
UBR4-216ENST00000494503 GCC2Q8IWJ2 1684 aa14.86□□□□□ -0.03
UBR4-216ENST00000494503 ADGRL2O95490 1459 aa14.85□□□□□ -0.03
UBR4-216ENST00000494503 KCNA6P17658 529 aa14.85□□□□□ -0.03
UBR4-216ENST00000494503 NOS1P29475 1434 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms