RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PTPRKQ15262 1439 aa18.27■□□□□ 0.52
COL6A3-213ENST00000493475 VPS8Q8N3P4 1428 aa18.27■□□□□ 0.52
COL6A3-213ENST00000493475 KIF3BO15066 747 aa18.27■□□□□ 0.52
COL6A3-213ENST00000493475 PLA2R1Q13018 1463 aa18.26■□□□□ 0.51
COL6A3-213ENST00000493475 WASHC2CQ9Y4E1 1318 aa18.25■□□□□ 0.51
COL6A3-213ENST00000493475 MYO3AQ8NEV4 1616 aa18.25■□□□□ 0.51
COL6A3-213ENST00000493475 CEP170BQ9Y4F5 1589 aaPredicted RBP18.25■□□□□ 0.51
COL6A3-213ENST00000493475 HOXD11P31277 338 aaPredicted RBP18.24■□□□□ 0.51
COL6A3-213ENST00000493475 APLP2Q06481 763 aa18.24■□□□□ 0.51
COL6A3-213ENST00000493475 PPP4R3CPQ6ZMV5 832 aa18.24■□□□□ 0.51
COL6A3-213ENST00000493475 ZNF142P52746 1687 aaPredicted RBP18.24■□□□□ 0.51
COL6A3-213ENST00000493475 KDM5DQ9BY66 1539 aa18.23■□□□□ 0.51
COL6A3-213ENST00000493475 ARHGEF5Q12774 1597 aa18.22■□□□□ 0.51
COL6A3-213ENST00000493475 LRRC9Q6ZRR7 1453 aa18.22■□□□□ 0.51
COL6A3-213ENST00000493475 DCAF8L1A6NGE4 600 aa18.22■□□□□ 0.51
COL6A3-213ENST00000493475 NCKAP5LQ9HCH0 1330 aa18.22■□□□□ 0.51
COL6A3-213ENST00000493475 A2ML1A8K2U0 1454 aa18.2■□□□□ 0.5
COL6A3-213ENST00000493475 TNRQ92752 1358 aa18.19■□□□□ 0.5
COL6A3-213ENST00000493475 MAP3K1Q13233 1512 aa18.19■□□□□ 0.5
COL6A3-213ENST00000493475 PZPP20742 1482 aa18.18■□□□□ 0.5
COL6A3-213ENST00000493475 TCOF1Q13428 1488 aaKnown RBP18.18■□□□□ 0.5
COL6A3-213ENST00000493475 MIA2Q96PC5 1412 aa18.17■□□□□ 0.5
COL6A3-213ENST00000493475 LTBP4Q8N2S1 1624 aa18.17■□□□□ 0.5
COL6A3-213ENST00000493475 THEMISQ8N1K5 641 aaPredicted RBP18.16■□□□□ 0.5
COL6A3-213ENST00000493475 RNF39Q9H2S5 420 aa18.16■□□□□ 0.5
COL6A3-213ENST00000493475 MYOM3Q5VTT5 1437 aa18.15■□□□□ 0.5
COL6A3-213ENST00000493475 NLRP1Q9C000 1473 aa18.14■□□□□ 0.5
COL6A3-213ENST00000493475 LOC105371045A0A1W2PR82 267 aa18.14■□□□□ 0.49
COL6A3-213ENST00000493475 ANKLE2Q86XL3 938 aa18.14■□□□□ 0.49
COL6A3-213ENST00000493475 ZNF335Q9H4Z2 1342 aaPredicted RBP18.14■□□□□ 0.49
COL6A3-213ENST00000493475 DISP3Q9P2K9 1392 aa18.13■□□□□ 0.49
COL6A3-213ENST00000493475 UBAP1LF5GYI3 381 aa18.12■□□□□ 0.49
COL6A3-213ENST00000493475 MAST1Q9Y2H9 1570 aa18.12■□□□□ 0.49
COL6A3-213ENST00000493475 DNMT1P26358 1616 aaKnown RBP18.12■□□□□ 0.49
COL6A3-213ENST00000493475 FBXO31Q5XUX0 539 aaPredicted RBP18.11■□□□□ 0.49
COL6A3-213ENST00000493475 ZC3H13Q5T200 1668 aaKnown RBP18.09■□□□□ 0.49
COL6A3-213ENST00000493475 EIF2AK4Q9P2K8 1649 aaKnown RBP18.09■□□□□ 0.49
COL6A3-213ENST00000493475 UGGT1Q9NYU2 1555 aa18.08■□□□□ 0.48
COL6A3-213ENST00000493475 DUOX2Q9NRD8 1548 aa18.07■□□□□ 0.48
COL6A3-213ENST00000493475 RNF17Q9BXT8 1623 aaKnown RBP18.06■□□□□ 0.48
COL6A3-213ENST00000493475 KANK4Q5T7N3 995 aaPredicted RBP18.06■□□□□ 0.48
COL6A3-213ENST00000493475 CPS1P31327 1500 aa18.06■□□□□ 0.48
COL6A3-213ENST00000493475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.05■□□□□ 0.48
COL6A3-213ENST00000493475 TOM1O60784 492 aa18.05■□□□□ 0.48
COL6A3-213ENST00000493475 POLR1AO95602 1720 aaPredicted RBP18.05■□□□□ 0.48
COL6A3-213ENST00000493475 ABCC3O15438 1527 aa18.04■□□□□ 0.48
COL6A3-213ENST00000493475 KANK1Q14678 1352 aa18.04■□□□□ 0.48
COL6A3-213ENST00000493475 SHANK2Q9UPX8 1470 aa18.03■□□□□ 0.48
COL6A3-213ENST00000493475 KIF15Q9NS87 1388 aa18.03■□□□□ 0.48
COL6A3-213ENST00000493475 ERBINQ96RT1 1412 aa18.02■□□□□ 0.48
COL6A3-213ENST00000493475 SPATA31D1Q6ZQQ2 1576 aa18.01■□□□□ 0.47
COL6A3-213ENST00000493475 NPHP4O75161 1426 aaPredicted RBP18.01■□□□□ 0.47
COL6A3-213ENST00000493475 ERVK-7P63135 1459 aa18■□□□□ 0.47
COL6A3-213ENST00000493475 DEPDC5O75140 1603 aa17.99■□□□□ 0.47
COL6A3-213ENST00000493475 MED14O60244 1454 aa17.99■□□□□ 0.47
COL6A3-213ENST00000493475 CNKSR2Q8WXI2 1034 aa17.98■□□□□ 0.47
COL6A3-213ENST00000493475 RRP7BPQ9NSQ0 103 aa17.98■□□□□ 0.47
COL6A3-213ENST00000493475 ANKRD30AQ9BXX3 1397 aa17.98■□□□□ 0.47
COL6A3-213ENST00000493475 NEURL4Q96JN8 1562 aa17.98■□□□□ 0.47
COL6A3-213ENST00000493475 PTPN23Q9H3S7 1636 aa17.98■□□□□ 0.47
COL6A3-213ENST00000493475 STAG3Q9UJ98 1225 aa17.97■□□□□ 0.47
COL6A3-213ENST00000493475 EID1Q9Y6B2 187 aa17.97■□□□□ 0.47
COL6A3-213ENST00000493475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.47
COL6A3-213ENST00000493475 ABCC5O15440 1437 aa17.96■□□□□ 0.47
COL6A3-213ENST00000493475 FGD6Q6ZV73 1430 aa17.96■□□□□ 0.47
COL6A3-213ENST00000493475 PRDM15P57071 1507 aaPredicted RBP17.95■□□□□ 0.46
COL6A3-213ENST00000493475 PIP4K2BP78356 416 aa17.95■□□□□ 0.46
COL6A3-213ENST00000493475 RNF216Q9NWF9 866 aaPredicted RBP17.95■□□□□ 0.46
COL6A3-213ENST00000493475 DAPK1P53355 1430 aa17.95■□□□□ 0.46
COL6A3-213ENST00000493475 ARHGAP31Q2M1Z3 1444 aa17.95■□□□□ 0.46
COL6A3-213ENST00000493475 CROCC2H7BZ55 1655 aa17.93■□□□□ 0.46
COL6A3-213ENST00000493475 IQGAP1P46940 1657 aa17.93■□□□□ 0.46
COL6A3-213ENST00000493475 MROH1Q8NDA8 1641 aa17.92■□□□□ 0.46
COL6A3-213ENST00000493475 SOCS7O14512 581 aa17.92■□□□□ 0.46
COL6A3-213ENST00000493475 SCAF11Q99590 1463 aaKnown RBP17.91■□□□□ 0.46
COL6A3-213ENST00000493475 CEP152O94986 1710 aa17.91■□□□□ 0.46
COL6A3-213ENST00000493475 TXNDC2Q86VQ3 553 aa17.9■□□□□ 0.46
COL6A3-213ENST00000493475 VWDEQ8N2E2 1590 aa17.9■□□□□ 0.46
COL6A3-213ENST00000493475 CHIC2Q9UKJ5 165 aa17.88■□□□□ 0.45
COL6A3-213ENST00000493475 SYNMO15061 1565 aa17.87■□□□□ 0.45
COL6A3-213ENST00000493475 FAM50AQ14320 339 aaKnown RBP17.87■□□□□ 0.45
COL6A3-213ENST00000493475 ILDR2Q71H61 639 aa17.86■□□□□ 0.45
COL6A3-213ENST00000493475 UBR1Q8IWV7 1749 aa17.86■□□□□ 0.45
COL6A3-213ENST00000493475 SLIT1O75093 1534 aa17.85■□□□□ 0.45
COL6A3-213ENST00000493475 HSPA1LP34931 641 aa17.85■□□□□ 0.45
COL6A3-213ENST00000493475 LMTK2Q8IWU2 1503 aa17.84■□□□□ 0.45
COL6A3-213ENST00000493475 ARHGAP23Q9P227 1491 aa17.83■□□□□ 0.45
COL6A3-213ENST00000493475 TMEM2Q9UHN6 1383 aa17.83■□□□□ 0.45
COL6A3-213ENST00000493475 SLC52A1Q9NWF4 448 aa17.82■□□□□ 0.44
COL6A3-213ENST00000493475 EFCAB6Q5THR3 1501 aa17.82■□□□□ 0.44
COL6A3-213ENST00000493475 ADGRL2O95490 1459 aa17.82■□□□□ 0.44
COL6A3-213ENST00000493475 HDGFP51858 240 aaKnown RBP17.81■□□□□ 0.44
COL6A3-213ENST00000493475 LRRC7Q96NW7 1537 aa17.81■□□□□ 0.44
COL6A3-213ENST00000493475 C1QBPQ07021 282 aaKnown RBP17.8■□□□□ 0.44
COL6A3-213ENST00000493475 CFAP65Q6ZU64 1925 aaKnown RBP17.8■□□□□ 0.44
COL6A3-213ENST00000493475 KDM5AP29375 1690 aaKnown RBP17.8■□□□□ 0.44
COL6A3-213ENST00000493475 ANKRD50Q9ULJ7 1429 aa17.8■□□□□ 0.44
COL6A3-213ENST00000493475 LTKP29376 864 aa17.79■□□□□ 0.44
COL6A3-213ENST00000493475 BCANQ96GW7 911 aa17.79■□□□□ 0.44
COL6A3-213ENST00000493475 RPRD2Q5VT52 1461 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms