RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ECM2O94769 699 aaPredicted RBP10.72□□□□□ -0.69
VPS52-219ENST00000493379 TRAPPC8Q9Y2L5 1435 aa10.71□□□□□ -0.69
VPS52-219ENST00000493379 CCDC18Q5T9S5 1454 aa10.7□□□□□ -0.7
VPS52-219ENST00000493379 TRIM52Q96A61 297 aa10.7□□□□□ -0.7
VPS52-219ENST00000493379 VPS8Q8N3P4 1428 aa10.69□□□□□ -0.7
VPS52-219ENST00000493379 TROQ12816 1431 aaPredicted RBP10.68□□□□□ -0.7
VPS52-219ENST00000493379 PTPRKQ15262 1439 aa10.68□□□□□ -0.7
VPS52-219ENST00000493379 SETBP1Q9Y6X0 1596 aa10.68□□□□□ -0.7
VPS52-219ENST00000493379 CDK13Q14004 1512 aaKnown RBP10.68□□□□□ -0.7
VPS52-219ENST00000493379 C9orf84Q5VXU9 1444 aa10.67□□□□□ -0.7
VPS52-219ENST00000493379 SUPT6HQ7KZ85 1726 aaKnown RBP10.67□□□□□ -0.7
VPS52-219ENST00000493379 CPS1P31327 1500 aa10.67□□□□□ -0.7
VPS52-219ENST00000493379 MAP3K1Q13233 1512 aa10.67□□□□□ -0.7
VPS52-219ENST00000493379 ATP10AO60312 1499 aa10.67□□□□□ -0.7
VPS52-219ENST00000493379 TCOF1Q13428 1488 aaKnown RBP10.66□□□□□ -0.7
VPS52-219ENST00000493379 PLEKHG5O94827 1062 aa10.65□□□□□ -0.7
VPS52-219ENST00000493379 ZBTB47Q9UFB7 747 aaPredicted RBP10.65□□□□□ -0.7
VPS52-219ENST00000493379 ATP1B4Q9UN42 357 aaPredicted RBP10.65□□□□□ -0.7
VPS52-219ENST00000493379 MAGI2Q86UL8 1455 aa10.65□□□□□ -0.7
VPS52-219ENST00000493379 SHANK2Q9UPX8 1470 aa10.65□□□□□ -0.7
VPS52-219ENST00000493379 HAP1P54257 671 aaPredicted RBP10.64□□□□□ -0.71
VPS52-219ENST00000493379 PLCH2O75038 1416 aa10.64□□□□□ -0.71
VPS52-219ENST00000493379 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS52-219ENST00000493379 LRRIQ1Q96JM4 1722 aa10.63□□□□□ -0.71
VPS52-219ENST00000493379 RGL2O15211 777 aa10.62□□□□□ -0.71
VPS52-219ENST00000493379 RBM33Q96EV2 1170 aaKnown RBP10.62□□□□□ -0.71
VPS52-219ENST00000493379 PLA2R1Q13018 1463 aa10.61□□□□□ -0.71
VPS52-219ENST00000493379 LRRC7Q96NW7 1537 aa10.6□□□□□ -0.71
VPS52-219ENST00000493379 BBXQ8WY36 941 aaPredicted RBP10.6□□□□□ -0.71
VPS52-219ENST00000493379 CFAP74Q9C0B2 1584 aa10.59□□□□□ -0.71
VPS52-219ENST00000493379 MYO3AQ8NEV4 1616 aa10.58□□□□□ -0.72
VPS52-219ENST00000493379 ZNF142P52746 1687 aaPredicted RBP10.58□□□□□ -0.72
VPS52-219ENST00000493379 VWDEQ8N2E2 1590 aa10.58□□□□□ -0.72
VPS52-219ENST00000493379 EFCAB2Q5VUJ9 269 aa10.58□□□□□ -0.72
VPS52-219ENST00000493379 CIZ1Q9ULV3 898 aaPredicted RBP10.58□□□□□ -0.72
VPS52-219ENST00000493379 MTUS2Q5JR59 1369 aa10.57□□□□□ -0.72
VPS52-219ENST00000493379 KANK4Q5T7N3 995 aaPredicted RBP10.57□□□□□ -0.72
VPS52-219ENST00000493379 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.57□□□□□ -0.72
VPS52-219ENST00000493379 SCAPERQ9BY12 1400 aa10.57□□□□□ -0.72
VPS52-219ENST00000493379 STRCP1A6NGW2 1772 aa10.57□□□□□ -0.72
VPS52-219ENST00000493379 TIAM1Q13009 1591 aa10.56□□□□□ -0.72
VPS52-219ENST00000493379 NEURL4Q96JN8 1562 aa10.56□□□□□ -0.72
VPS52-219ENST00000493379 CEP170BQ9Y4F5 1589 aaPredicted RBP10.56□□□□□ -0.72
VPS52-219ENST00000493379 LRRC9Q6ZRR7 1453 aa10.56□□□□□ -0.72
VPS52-219ENST00000493379 RNF17Q9BXT8 1623 aaKnown RBP10.56□□□□□ -0.72
VPS52-219ENST00000493379 ESF1Q9H501 851 aaKnown RBP10.56□□□□□ -0.72
VPS52-219ENST00000493379 GPATCH8Q9UKJ3 1502 aaKnown RBP10.56□□□□□ -0.72
VPS52-219ENST00000493379 KIF14Q15058 1648 aa10.55□□□□□ -0.72
VPS52-219ENST00000493379 EHBP1L1Q8N3D4 1523 aa10.54□□□□□ -0.72
VPS52-219ENST00000493379 ZRANB1Q9UGI0 708 aa10.54□□□□□ -0.72
VPS52-219ENST00000493379 POLR1AO95602 1720 aaPredicted RBP10.53□□□□□ -0.72
VPS52-219ENST00000493379 KIAA1107Q9UPP5 1409 aa10.53□□□□□ -0.72
VPS52-219ENST00000493379 DIP2CQ9Y2E4 1556 aa10.52□□□□□ -0.72
VPS52-219ENST00000493379 NPATQ14207 1427 aa10.52□□□□□ -0.73
VPS52-219ENST00000493379 VSIG10Q8N0Z9 540 aa10.52□□□□□ -0.73
VPS52-219ENST00000493379 AKT1S1Q96B36 256 aa10.52□□□□□ -0.73
VPS52-219ENST00000493379 RBM42Q9BTD8 480 aaKnown RBP10.52□□□□□ -0.73
VPS52-219ENST00000493379 CCNB3Q8WWL7 1395 aa10.52□□□□□ -0.73
VPS52-219ENST00000493379 NCOA2Q15596 1464 aa10.51□□□□□ -0.73
VPS52-219ENST00000493379 SPDYE1Q8NFV5 336 aaPredicted RBP10.51□□□□□ -0.73
VPS52-219ENST00000493379 CFDP1Q9UEE9 299 aaPredicted RBP10.51□□□□□ -0.73
VPS52-219ENST00000493379 RSPH4AQ5TD94 716 aa10.5□□□□□ -0.73
VPS52-219ENST00000493379 PAXIP1Q6ZW49 1069 aaPredicted RBP10.5□□□□□ -0.73
VPS52-219ENST00000493379 ABCA6Q8N139 1617 aa10.49□□□□□ -0.73
VPS52-219ENST00000493379 ZMYM3Q14202 1370 aa10.49□□□□□ -0.73
VPS52-219ENST00000493379 MIA2Q96PC5 1412 aa10.49□□□□□ -0.73
VPS52-219ENST00000493379 AGLP35573 1532 aa10.48□□□□□ -0.73
VPS52-219ENST00000493379 CDC42BPBQ9Y5S2 1711 aa10.48□□□□□ -0.73
VPS52-219ENST00000493379 MYT1LQ9UL68 1186 aa10.48□□□□□ -0.73
VPS52-219ENST00000493379 MBD5Q9P267 1494 aa10.48□□□□□ -0.73
VPS52-219ENST00000493379 LRP6O75581 1613 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 DNMT1P26358 1616 aaKnown RBP10.47□□□□□ -0.73
VPS52-219ENST00000493379 PREX2Q70Z35 1606 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 MYO5CQ9NQX4 1742 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 RXRBP28702 533 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 AFAP1Q8N556 730 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 CNTLNQ9NXG0 1405 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 PLEKHH2Q8IVE3 1493 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 ARHGAP5Q13017 1502 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 MROH2AA6NES4 1674 aa10.47□□□□□ -0.73
VPS52-219ENST00000493379 NUBP1P53384 320 aa10.46□□□□□ -0.73
VPS52-219ENST00000493379 CFAP44Q96MT7 982 aa10.46□□□□□ -0.73
VPS52-219ENST00000493379 MYOM3Q5VTT5 1437 aa10.46□□□□□ -0.74
VPS52-219ENST00000493379 CDC42BPAQ5VT25 1732 aa10.46□□□□□ -0.74
VPS52-219ENST00000493379 XIRP1Q702N8 1843 aaKnown RBP10.45□□□□□ -0.74
VPS52-219ENST00000493379 ZNF518AQ6AHZ1 1483 aa10.45□□□□□ -0.74
VPS52-219ENST00000493379 MLH3Q9UHC1 1453 aa10.45□□□□□ -0.74
VPS52-219ENST00000493379 ZNF644Q9H582 1327 aaPredicted RBP10.45□□□□□ -0.74
VPS52-219ENST00000493379 CHGAP10645 457 aaKnown RBP10.45□□□□□ -0.74
VPS52-219ENST00000493379 GSE1Q14687 1217 aa10.45□□□□□ -0.74
VPS52-219ENST00000493379 KDM5CP41229 1560 aa10.44□□□□□ -0.74
VPS52-219ENST00000493379 REREQ9P2R6 1566 aa10.44□□□□□ -0.74
VPS52-219ENST00000493379 ABCC1P33527 1531 aa10.44□□□□□ -0.74
VPS52-219ENST00000493379 HNRNPMP52272 730 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS52-219ENST00000493379 ZNF772Q68DY9 489 aaPredicted RBP10.44□□□□□ -0.74
VPS52-219ENST00000493379 CLEC11AQ9Y240 323 aa10.44□□□□□ -0.74
VPS52-219ENST00000493379 CLTCQ00610 1675 aaKnown RBP10.44□□□□□ -0.74
VPS52-219ENST00000493379 ROBO1Q9Y6N7 1651 aa10.44□□□□□ -0.74
VPS52-219ENST00000493379 SAMD9LQ8IVG5 1584 aa10.43□□□□□ -0.74
VPS52-219ENST00000493379 RGS12O14924 1447 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms