RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PPP6R1Q9UPN7 881 aa38.27■■■■□ 3.72
UPF3A-209ENST00000492270 NPATQ14207 1427 aa38.25■■■■□ 3.71
UPF3A-209ENST00000492270 FAM135AQ9P2D6 1515 aa38.24■■■■□ 3.71
UPF3A-209ENST00000492270 PPARGC1BQ86YN6 1023 aaKnown RBP38.24■■■■□ 3.71
UPF3A-209ENST00000492270 MROH1Q8NDA8 1641 aa38.23■■■■□ 3.71
UPF3A-209ENST00000492270 KIF15Q9NS87 1388 aa38.22■■■■□ 3.71
UPF3A-209ENST00000492270 PTPRKQ15262 1439 aa38.21■■■■□ 3.71
UPF3A-209ENST00000492270 MYO3AQ8NEV4 1616 aa38.21■■■■□ 3.71
UPF3A-209ENST00000492270 FAM50AQ14320 339 aaKnown RBP38.2■■■■□ 3.71
UPF3A-209ENST00000492270 STRCQ7RTU9 1775 aa38.18■■■■□ 3.7
UPF3A-209ENST00000492270 RRP7BPQ9NSQ0 103 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 CHIC2Q9UKJ5 165 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 CEP152O94986 1710 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 ZC3H13Q5T200 1668 aaKnown RBP38.17■■■■□ 3.7
UPF3A-209ENST00000492270 ZNF142P52746 1687 aaPredicted RBP38.14■■■■□ 3.7
UPF3A-209ENST00000492270 WASHC2CQ9Y4E1 1318 aa38.13■■■■□ 3.7
UPF3A-209ENST00000492270 ERBINQ96RT1 1412 aa38.12■■■■□ 3.69
UPF3A-209ENST00000492270 ABCC3O15438 1527 aa38.12■■■■□ 3.69
UPF3A-209ENST00000492270 ANKRD30AQ9BXX3 1397 aa38.1■■■■□ 3.69
UPF3A-209ENST00000492270 ADGRL2O95490 1459 aa38.09■■■■□ 3.69
UPF3A-209ENST00000492270 PZPP20742 1482 aa38.09■■■■□ 3.69
UPF3A-209ENST00000492270 NCOA1Q15788 1441 aa38.08■■■■□ 3.69
UPF3A-209ENST00000492270 DEPDC5O75140 1603 aa38.08■■■■□ 3.69
UPF3A-209ENST00000492270 PRDM15P57071 1507 aaPredicted RBP38.07■■■■□ 3.68
UPF3A-209ENST00000492270 CEP170BQ9Y4F5 1589 aaPredicted RBP38.06■■■■□ 3.68
UPF3A-209ENST00000492270 CAMSAP1Q5T5Y3 1602 aa38.05■■■■□ 3.68
UPF3A-209ENST00000492270 FBXO31Q5XUX0 539 aaPredicted RBP38.03■■■■□ 3.68
UPF3A-209ENST00000492270 CFAP65Q6ZU64 1925 aaKnown RBP38.01■■■■□ 3.68
UPF3A-209ENST00000492270 TNRQ92752 1358 aa37.96■■■■□ 3.67
UPF3A-209ENST00000492270 A2ML1A8K2U0 1454 aa37.93■■■■□ 3.66
UPF3A-209ENST00000492270 SPATA31D1Q6ZQQ2 1576 aa37.91■■■■□ 3.66
UPF3A-209ENST00000492270 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.9■■■■□ 3.661e-8■■■■■ 27.4
UPF3A-209ENST00000492270 VWDEQ8N2E2 1590 aa37.89■■■■□ 3.66
UPF3A-209ENST00000492270 ERVK-7P63135 1459 aa37.87■■■■□ 3.65
UPF3A-209ENST00000492270 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.86■■■■□ 3.65
UPF3A-209ENST00000492270 ANKRD50Q9ULJ7 1429 aa37.86■■■■□ 3.65
UPF3A-209ENST00000492270 ITGAEP38570 1179 aa37.84■■■■□ 3.65
UPF3A-209ENST00000492270 PLA2R1Q13018 1463 aa37.83■■■■□ 3.65
UPF3A-209ENST00000492270 KANK1Q14678 1352 aa37.82■■■■□ 3.65
UPF3A-209ENST00000492270 RRBP1Q9P2E9 1410 aaKnown RBP37.81■■■■□ 3.64
UPF3A-209ENST00000492270 LMTK2Q8IWU2 1503 aa37.81■■■■□ 3.64
UPF3A-209ENST00000492270 NLRP1Q9C000 1473 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 DMRT2Q9Y5R5 561 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 ROCK1Q13464 1354 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 PTPRTO14522 1441 aa37.79■■■■□ 3.64
UPF3A-209ENST00000492270 ARHGAP31Q2M1Z3 1444 aa37.79■■■■□ 3.64
UPF3A-209ENST00000492270 POLR1AO95602 1720 aaPredicted RBP37.78■■■■□ 3.64
UPF3A-209ENST00000492270 NCKAP5LQ9HCH0 1330 aa37.77■■■■□ 3.64
UPF3A-209ENST00000492270 UNC13BO14795 1591 aa37.76■■■■□ 3.64
UPF3A-209ENST00000492270 UGGT1Q9NYU2 1555 aa37.75■■■■□ 3.63
UPF3A-209ENST00000492270 EFCAB6Q5THR3 1501 aa37.73■■■■□ 3.63
UPF3A-209ENST00000492270 ILDR1Q86SU0 546 aaPredicted RBP37.73■■■■□ 3.63
UPF3A-209ENST00000492270 UBR1Q8IWV7 1749 aa37.7■■■■□ 3.63
UPF3A-209ENST00000492270 TET3O43151 1660 aa37.67■■■■□ 3.62
UPF3A-209ENST00000492270 NEURL4Q96JN8 1562 aa37.67■■■■□ 3.62
UPF3A-209ENST00000492270 GCC2Q8IWJ2 1684 aa37.66■■■■□ 3.62
UPF3A-209ENST00000492270 PKD2Q13563 968 aa37.65■■■■□ 3.62
UPF3A-209ENST00000492270 SYNMO15061 1565 aa37.63■■■■□ 3.61
UPF3A-209ENST00000492270 PIK3C2BO00750 1634 aa37.62■■■■□ 3.61
UPF3A-209ENST00000492270 IQGAP3Q86VI3 1631 aa37.61■■■■□ 3.61
UPF3A-209ENST00000492270 THEMISQ8N1K5 641 aaPredicted RBP37.59■■■■□ 3.61
UPF3A-209ENST00000492270 LTBP4Q8N2S1 1624 aa37.58■■■■□ 3.61
UPF3A-209ENST00000492270 CERKQ8TCT0 537 aa37.57■■■■□ 3.6
UPF3A-209ENST00000492270 E9PCH4 1651 aa37.56■■■■□ 3.6
UPF3A-209ENST00000492270 NOS1P29475 1434 aa37.54■■■■□ 3.6
UPF3A-209ENST00000492270 FBXO41Q8TF61 875 aa37.52■■■■□ 3.6
UPF3A-209ENST00000492270 RPRD2Q5VT52 1461 aaKnown RBP37.52■■■■□ 3.6
UPF3A-209ENST00000492270 ANKLE2Q86XL3 938 aa37.49■■■■□ 3.59
UPF3A-209ENST00000492270 KDM5AP29375 1690 aaKnown RBP37.49■■■■□ 3.59
UPF3A-209ENST00000492270 IQGAP1P46940 1657 aa37.48■■■■□ 3.59
UPF3A-209ENST00000492270 NAIPQ13075 1403 aa37.46■■■■□ 3.59
UPF3A-209ENST00000492270 ZNF335Q9H4Z2 1342 aaPredicted RBP37.46■■■■□ 3.59
UPF3A-209ENST00000492270 MED14O60244 1454 aa37.45■■■■□ 3.59
UPF3A-209ENST00000492270 NUP155O75694 1391 aa37.45■■■■□ 3.59
UPF3A-209ENST00000492270 MYO5BQ9ULV0 1848 aa37.44■■■■□ 3.58
UPF3A-209ENST00000492270 SLIT1O75093 1534 aa37.44■■■■□ 3.58
UPF3A-209ENST00000492270 IDI1Q13907 227 aa37.43■■■■□ 3.58
UPF3A-209ENST00000492270 ARHGAP23Q9P227 1491 aa37.43■■■■□ 3.58
UPF3A-209ENST00000492270 NPHP4O75161 1426 aaPredicted RBP37.43■■■■□ 3.58
UPF3A-209ENST00000492270 ADGRB3O60242 1522 aa37.41■■■■□ 3.58
UPF3A-209ENST00000492270 SCAF11Q99590 1463 aaKnown RBP37.37■■■■□ 3.57
UPF3A-209ENST00000492270 HFM1A2PYH4 1435 aa37.36■■■■□ 3.57
UPF3A-209ENST00000492270 STAG3Q9UJ98 1225 aa37.35■■■■□ 3.57
UPF3A-209ENST00000492270 LTKP29376 864 aa37.32■■■■□ 3.56
UPF3A-209ENST00000492270 SLC52A1Q9NWF4 448 aa37.32■■■■□ 3.56
UPF3A-209ENST00000492270 TMEM2Q9UHN6 1383 aa37.31■■■■□ 3.56
UPF3A-209ENST00000492270 SPHKAPQ2M3C7 1700 aa37.3■■■■□ 3.56
UPF3A-209ENST00000492270 TMEM131LA2VDJ0 1609 aa37.29■■■■□ 3.56
UPF3A-209ENST00000492270 STRCP1A6NGW2 1772 aa37.28■■■■□ 3.56
UPF3A-209ENST00000492270 TXNDC2Q86VQ3 553 aa37.28■■■■□ 3.56
UPF3A-209ENST00000492270 IQSEC2Q5JU85 1478 aa37.27■■■■□ 3.56
UPF3A-209ENST00000492270 EID1Q9Y6B2 187 aa37.22■■■■□ 3.55
UPF3A-209ENST00000492270 CPS1P31327 1500 aa37.2■■■■□ 3.55
UPF3A-209ENST00000492270 ZFYVE9O95405 1425 aa37.14■■■■□ 3.54
UPF3A-209ENST00000492270 TRIM52Q96A61 297 aa37.14■■■■□ 3.54
UPF3A-209ENST00000492270 CHGAP10645 457 aaKnown RBP37.12■■■■□ 3.53
UPF3A-209ENST00000492270 RIMS2Q9UQ26 1411 aa37.1■■■■□ 3.53
UPF3A-209ENST00000492270 CLTCL1P53675 1640 aa37.1■■■■□ 3.53
UPF3A-209ENST00000492270 TRPM2O94759 1503 aa37.08■■■■□ 3.53
UPF3A-209ENST00000492270 SENP3Q9H4L4 574 aaPredicted RBP37.03■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms