RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 REREQ9P2R6 1566 aa33.22■■■□□ 2.91
USF3-203ENST00000491165 UNC13BO14795 1591 aa33.22■■■□□ 2.91
USF3-203ENST00000491165 KIF3BO15066 747 aa33.22■■■□□ 2.91
USF3-203ENST00000491165 DEPDC5O75140 1603 aa33.21■■■□□ 2.91
USF3-203ENST00000491165 MROH1Q8NDA8 1641 aa33.2■■■□□ 2.91
USF3-203ENST00000491165 BCORL1Q5H9F3 1711 aa33.19■■■□□ 2.9
USF3-203ENST00000491165 TRIM52Q96A61 297 aa33.19■■■□□ 2.9
USF3-203ENST00000491165 NEUROD1Q13562 356 aa33.19■■■□□ 2.9
USF3-203ENST00000491165 CENPBP07199 599 aaPredicted RBP33.17■■■□□ 2.9
USF3-203ENST00000491165 DHX57Q6P158 1386 aaKnown RBP33.17■■■□□ 2.9
USF3-203ENST00000491165 RNF17Q9BXT8 1623 aaKnown RBP33.15■■■□□ 2.9
USF3-203ENST00000491165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.15■■■□□ 2.9
USF3-203ENST00000491165 PELP1Q8IZL8 1130 aaKnown RBP33.14■■■□□ 2.9
USF3-203ENST00000491165 NUP155O75694 1391 aa33.14■■■□□ 2.9
USF3-203ENST00000491165 PZPP20742 1482 aa33.14■■■□□ 2.9
USF3-203ENST00000491165 KDM5DQ9BY66 1539 aa33.12■■■□□ 2.89
USF3-203ENST00000491165 PRDM15P57071 1507 aaPredicted RBP33.11■■■□□ 2.89
USF3-203ENST00000491165 AGLP35573 1532 aa33.11■■■□□ 2.89
USF3-203ENST00000491165 IQGAP3Q86VI3 1631 aa33.09■■■□□ 2.89
USF3-203ENST00000491165 GGT6Q6P531 493 aa33.08■■■□□ 2.89
USF3-203ENST00000491165 FAM135AQ9P2D6 1515 aa33.08■■■□□ 2.89
USF3-203ENST00000491165 VWDEQ8N2E2 1590 aa33.06■■■□□ 2.88
USF3-203ENST00000491165 MPHOSPH9Q99550 1183 aa33.05■■■□□ 2.88
USF3-203ENST00000491165 CEP152O94986 1710 aa33.03■■■□□ 2.88
USF3-203ENST00000491165 SLC4A1APQ9BWU0 796 aaKnown RBP33.02■■■□□ 2.88
USF3-203ENST00000491165 FOXD1Q16676 465 aa33■■■□□ 2.87
USF3-203ENST00000491165 MLECQ14165 292 aa32.99■■■□□ 2.87
USF3-203ENST00000491165 ARID4BQ4LE39 1312 aaPredicted RBP32.98■■■□□ 2.87
USF3-203ENST00000491165 ABCC3O15438 1527 aa32.94■■■□□ 2.86
USF3-203ENST00000491165 PKD2Q13563 968 aa32.93■■■□□ 2.86
USF3-203ENST00000491165 KANK1Q14678 1352 aa32.93■■■□□ 2.86
USF3-203ENST00000491165 TET3O43151 1660 aa32.92■■■□□ 2.86
USF3-203ENST00000491165 E9PCH4 1651 aa32.92■■■□□ 2.86
USF3-203ENST00000491165 CLSPNQ9HAW4 1339 aa32.9■■■□□ 2.86
USF3-203ENST00000491165 WASHC2CQ9Y4E1 1318 aa32.9■■■□□ 2.86
USF3-203ENST00000491165 LMTK2Q8IWU2 1503 aa32.9■■■□□ 2.86
USF3-203ENST00000491165 ZC3H13Q5T200 1668 aaKnown RBP32.87■■■□□ 2.85
USF3-203ENST00000491165 CLTCQ00610 1675 aaKnown RBP32.87■■■□□ 2.85
USF3-203ENST00000491165 GTF3C3Q9Y5Q9 886 aa32.87■■■□□ 2.85
USF3-203ENST00000491165 CAMSAP1Q5T5Y3 1602 aa32.86■■■□□ 2.85
USF3-203ENST00000491165 EFCAB6Q5THR3 1501 aa32.86■■■□□ 2.85
USF3-203ENST00000491165 CFAP65Q6ZU64 1925 aaKnown RBP32.82■■■□□ 2.84
USF3-203ENST00000491165 NPATQ14207 1427 aa32.8■■■□□ 2.84
USF3-203ENST00000491165 ANKRD30BQ9BXX2 1392 aa32.79■■■□□ 2.84
USF3-203ENST00000491165 PLA2R1Q13018 1463 aa32.77■■■□□ 2.84
USF3-203ENST00000491165 SIN3AQ96ST3 1273 aa32.77■■■□□ 2.84
USF3-203ENST00000491165 PPP6R1Q9UPN7 881 aa32.77■■■□□ 2.84
USF3-203ENST00000491165 FER1L4A9Z1Z3 1794 aa32.76■■■□□ 2.84
USF3-203ENST00000491165 MIER1Q8N108 512 aa32.74■■■□□ 2.83
USF3-203ENST00000491165 SPHKAPQ2M3C7 1700 aa32.72■■■□□ 2.83
USF3-203ENST00000491165 MADDQ8WXG6 1647 aa32.72■■■□□ 2.83
USF3-203ENST00000491165 ADAMTSL3P82987 1691 aa32.71■■■□□ 2.83
USF3-203ENST00000491165 ARHGAP31Q2M1Z3 1444 aa32.7■■■□□ 2.83
USF3-203ENST00000491165 RPRD2Q5VT52 1461 aaKnown RBP32.69■■■□□ 2.82
USF3-203ENST00000491165 ZMYM3Q14202 1370 aa32.66■■■□□ 2.82
USF3-203ENST00000491165 PTPRTO14522 1441 aa32.66■■■□□ 2.82
USF3-203ENST00000491165 MROH2AA6NES4 1674 aa32.66■■■□□ 2.82
USF3-203ENST00000491165 ESF1Q9H501 851 aaKnown RBP32.65■■■□□ 2.82
USF3-203ENST00000491165 PREX1Q8TCU6 1659 aa32.65■■■□□ 2.82
USF3-203ENST00000491165 FBXO31Q5XUX0 539 aaPredicted RBP32.64■■■□□ 2.82
USF3-203ENST00000491165 UGGT1Q9NYU2 1555 aa32.64■■■□□ 2.82
USF3-203ENST00000491165 TRPM2O94759 1503 aa32.64■■■□□ 2.82
USF3-203ENST00000491165 YTHDC1Q96MU7 727 aaKnown RBP32.63■■■□□ 2.81
USF3-203ENST00000491165 RIMS1Q86UR5 1692 aaKnown RBP32.63■■■□□ 2.81
USF3-203ENST00000491165 C3P01024 1663 aa32.62■■■□□ 2.81
USF3-203ENST00000491165 CNTLNQ9NXG0 1405 aa32.62■■■□□ 2.81
USF3-203ENST00000491165 SYNMO15061 1565 aa32.61■■■□□ 2.81
USF3-203ENST00000491165 NOS1P29475 1434 aa32.61■■■□□ 2.81
USF3-203ENST00000491165 CLTCL1P53675 1640 aa32.59■■■□□ 2.81
USF3-203ENST00000491165 CEBPAP49715 358 aaPredicted RBP32.59■■■□□ 2.81
USF3-203ENST00000491165 ERVK-7P63135 1459 aa32.57■■■□□ 2.8
USF3-203ENST00000491165 CCDC144AA2RUR9 1427 aa32.56■■■□□ 2.8
USF3-203ENST00000491165 SPATA31D1Q6ZQQ2 1576 aa32.55■■■□□ 2.8
USF3-203ENST00000491165 PLPPR3Q6T4P5 718 aa32.51■■■□□ 2.8
USF3-203ENST00000491165 PIK3C2BO00750 1634 aa32.51■■■□□ 2.8
USF3-203ENST00000491165 KDM4FA0A1W2PPD8 638 aa32.42■■■□□ 2.78
USF3-203ENST00000491165 IDI1Q13907 227 aa32.42■■■□□ 2.78
USF3-203ENST00000491165 KIF1BO60333 1816 aa32.42■■■□□ 2.78
USF3-203ENST00000491165 PTPRMP28827 1452 aa32.41■■■□□ 2.78
USF3-203ENST00000491165 SPATA31E1Q6ZUB1 1445 aa32.4■■■□□ 2.78
USF3-203ENST00000491165 TONSLQ96HA7 1378 aa32.39■■■□□ 2.77
USF3-203ENST00000491165 MYO5BQ9ULV0 1848 aa32.38■■■□□ 2.77
USF3-203ENST00000491165 TNRQ92752 1358 aa32.37■■■□□ 2.77
USF3-203ENST00000491165 RGL3Q3MIN7 710 aa32.37■■■□□ 2.77
USF3-203ENST00000491165 L3MBTL2Q969R5 705 aa32.37■■■□□ 2.77
USF3-203ENST00000491165 SLC52A1Q9NWF4 448 aa32.36■■■□□ 2.77
USF3-203ENST00000491165 ADGRB3O60242 1522 aa32.35■■■□□ 2.77
USF3-203ENST00000491165 TMEM131LA2VDJ0 1609 aa32.33■■■□□ 2.77
USF3-203ENST00000491165 CHGAP10645 457 aaKnown RBP32.3■■■□□ 2.76
USF3-203ENST00000491165 MYO3AQ8NEV4 1616 aa32.29■■■□□ 2.76
USF3-203ENST00000491165 NEURL4Q96JN8 1562 aa32.29■■■□□ 2.76
USF3-203ENST00000491165 TIMELESSQ9UNS1 1208 aa32.27■■■□□ 2.76
USF3-203ENST00000491165 UBR1Q8IWV7 1749 aa32.25■■■□□ 2.75
USF3-203ENST00000491165 IFT172Q9UG01 1749 aa32.23■■■□□ 2.75
USF3-203ENST00000491165 NLRP1Q9C000 1473 aa32.23■■■□□ 2.75
USF3-203ENST00000491165 DCAF11Q8TEB1 546 aa32.23■■■□□ 2.75
USF3-203ENST00000491165 A2ML1A8K2U0 1454 aa32.22■■■□□ 2.75
USF3-203ENST00000491165 SETD1BQ9UPS6 1966 aaKnown RBP32.22■■■□□ 2.75
USF3-203ENST00000491165 PPP1R15AO75807 674 aaPredicted RBP32.21■■■□□ 2.75
USF3-203ENST00000491165 KDM2AQ9Y2K7 1162 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms