RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PTPRKQ15262 1439 aa28.04■■■□□ 2.08
COL9A3-214ENST00000490398 UHRF1BP1Q6BDS2 1440 aa28.03■■■□□ 2.08
COL9A3-214ENST00000490398 DUOX2Q9NRD8 1548 aa28.02■■■□□ 2.08
COL9A3-214ENST00000490398 WASHC2CQ9Y4E1 1318 aa28■■■□□ 2.07
COL9A3-214ENST00000490398 NPATQ14207 1427 aa28■■■□□ 2.07
COL9A3-214ENST00000490398 RNF17Q9BXT8 1623 aaKnown RBP28■■■□□ 2.07
COL9A3-214ENST00000490398 KDM5DQ9BY66 1539 aa27.99■■■□□ 2.07
COL9A3-214ENST00000490398 FBXO31Q5XUX0 539 aaPredicted RBP27.99■■■□□ 2.07
COL9A3-214ENST00000490398 MROH1Q8NDA8 1641 aa27.99■■■□□ 2.07
COL9A3-214ENST00000490398 EIF2AK4Q9P2K8 1649 aaKnown RBP27.97■■■□□ 2.07
COL9A3-214ENST00000490398 NCOA1Q15788 1441 aa27.97■■■□□ 2.07
COL9A3-214ENST00000490398 SETD1BQ9UPS6 1966 aaKnown RBP27.97■■■□□ 2.07
COL9A3-214ENST00000490398 ANKRD30AQ9BXX3 1397 aa27.95■■■□□ 2.06
COL9A3-214ENST00000490398 ERBINQ96RT1 1412 aa27.93■■■□□ 2.06
COL9A3-214ENST00000490398 ABCC3O15438 1527 aa27.93■■■□□ 2.06
COL9A3-214ENST00000490398 ADGRL2O95490 1459 aa27.93■■■□□ 2.06
COL9A3-214ENST00000490398 FAM135AQ9P2D6 1515 aa27.92■■■□□ 2.06
COL9A3-214ENST00000490398 PZPP20742 1482 aa27.9■■■□□ 2.06
COL9A3-214ENST00000490398 MYO3AQ8NEV4 1616 aa27.88■■■□□ 2.05
COL9A3-214ENST00000490398 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.87■■■□□ 2.052e-6■□□□□ 8.7
COL9A3-214ENST00000490398 STRCQ7RTU9 1775 aa27.86■■■□□ 2.05
COL9A3-214ENST00000490398 ITGAEP38570 1179 aa27.86■■■□□ 2.05
COL9A3-214ENST00000490398 TNRQ92752 1358 aa27.85■■■□□ 2.05
COL9A3-214ENST00000490398 PRDM15P57071 1507 aaPredicted RBP27.84■■■□□ 2.05
COL9A3-214ENST00000490398 CEP152O94986 1710 aa27.84■■■□□ 2.05
COL9A3-214ENST00000490398 CEP170BQ9Y4F5 1589 aaPredicted RBP27.82■■■□□ 2.04
COL9A3-214ENST00000490398 DEPDC5O75140 1603 aa27.82■■■□□ 2.04
COL9A3-214ENST00000490398 ZC3H13Q5T200 1668 aaKnown RBP27.81■■■□□ 2.04
COL9A3-214ENST00000490398 CAMSAP1Q5T5Y3 1602 aa27.8■■■□□ 2.04
COL9A3-214ENST00000490398 ZNF142P52746 1687 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-214ENST00000490398 ANKRD50Q9ULJ7 1429 aa27.79■■■□□ 2.04
COL9A3-214ENST00000490398 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.79■■■□□ 2.04
COL9A3-214ENST00000490398 RRBP1Q9P2E9 1410 aaKnown RBP27.78■■■□□ 2.04
COL9A3-214ENST00000490398 A2ML1A8K2U0 1454 aa27.77■■■□□ 2.04
COL9A3-214ENST00000490398 NCKAP5LQ9HCH0 1330 aa27.76■■■□□ 2.03
COL9A3-214ENST00000490398 ERVK-7P63135 1459 aa27.76■■■□□ 2.03
COL9A3-214ENST00000490398 VWDEQ8N2E2 1590 aa27.75■■■□□ 2.03
COL9A3-214ENST00000490398 ROCK1Q13464 1354 aa27.74■■■□□ 2.03
COL9A3-214ENST00000490398 SPATA31D1Q6ZQQ2 1576 aa27.74■■■□□ 2.03
COL9A3-214ENST00000490398 KANK1Q14678 1352 aa27.72■■■□□ 2.03
COL9A3-214ENST00000490398 ARHGAP31Q2M1Z3 1444 aa27.71■■■□□ 2.03
COL9A3-214ENST00000490398 LMTK2Q8IWU2 1503 aa27.7■■■□□ 2.02
COL9A3-214ENST00000490398 PTPRTO14522 1441 aa27.68■■■□□ 2.02
COL9A3-214ENST00000490398 DMRT2Q9Y5R5 561 aa27.68■■■□□ 2.02
COL9A3-214ENST00000490398 NLRP1Q9C000 1473 aa27.68■■■□□ 2.02
COL9A3-214ENST00000490398 ILDR1Q86SU0 546 aaPredicted RBP27.67■■■□□ 2.02
COL9A3-214ENST00000490398 PLA2R1Q13018 1463 aa27.67■■■□□ 2.02
COL9A3-214ENST00000490398 CFAP65Q6ZU64 1925 aaKnown RBP27.65■■■□□ 2.02
COL9A3-214ENST00000490398 UGGT1Q9NYU2 1555 aa27.62■■■□□ 2.01
COL9A3-214ENST00000490398 EFCAB6Q5THR3 1501 aa27.62■■■□□ 2.01
COL9A3-214ENST00000490398 UNC13BO14795 1591 aa27.6■■■□□ 2.01
COL9A3-214ENST00000490398 PKD2Q13563 968 aa27.6■■■□□ 2.01
COL9A3-214ENST00000490398 THEMISQ8N1K5 641 aaPredicted RBP27.58■■■□□ 2.01
COL9A3-214ENST00000490398 CERKQ8TCT0 537 aa27.56■■■□□ 2
COL9A3-214ENST00000490398 NEURL4Q96JN8 1562 aa27.56■■■□□ 2
COL9A3-214ENST00000490398 NOS1P29475 1434 aa27.55■■■□□ 2
COL9A3-214ENST00000490398 SYNMO15061 1565 aa27.55■■■□□ 2
COL9A3-214ENST00000490398 NAIPQ13075 1403 aa27.53■■■□□ 2
COL9A3-214ENST00000490398 IDI1Q13907 227 aa27.53■■■□□ 2
COL9A3-214ENST00000490398 NUP155O75694 1391 aa27.52■■■□□ 2
COL9A3-214ENST00000490398 UBR1Q8IWV7 1749 aa27.52■■■□□ 2
COL9A3-214ENST00000490398 ANKLE2Q86XL3 938 aa27.51■■□□□ 1.99
COL9A3-214ENST00000490398 TET3O43151 1660 aa27.51■■□□□ 1.99
COL9A3-214ENST00000490398 LTBP4Q8N2S1 1624 aa27.51■■□□□ 1.99
COL9A3-214ENST00000490398 ZNF335Q9H4Z2 1342 aaPredicted RBP27.5■■□□□ 1.99
COL9A3-214ENST00000490398 PIK3C2BO00750 1634 aa27.5■■□□□ 1.99
COL9A3-214ENST00000490398 IQGAP3Q86VI3 1631 aa27.49■■□□□ 1.99
COL9A3-214ENST00000490398 POLR1AO95602 1720 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-214ENST00000490398 FBXO41Q8TF61 875 aa27.47■■□□□ 1.99
COL9A3-214ENST00000490398 RPRD2Q5VT52 1461 aaKnown RBP27.46■■□□□ 1.99
COL9A3-214ENST00000490398 LTKP29376 864 aa27.45■■□□□ 1.98
COL9A3-214ENST00000490398 E9PCH4 1651 aa27.44■■□□□ 1.98
COL9A3-214ENST00000490398 GCC2Q8IWJ2 1684 aa27.44■■□□□ 1.98
COL9A3-214ENST00000490398 ARHGAP23Q9P227 1491 aa27.44■■□□□ 1.98
COL9A3-214ENST00000490398 HFM1A2PYH4 1435 aa27.43■■□□□ 1.98
COL9A3-214ENST00000490398 NPHP4O75161 1426 aaPredicted RBP27.43■■□□□ 1.98
COL9A3-214ENST00000490398 MED14O60244 1454 aa27.43■■□□□ 1.98
COL9A3-214ENST00000490398 SLIT1O75093 1534 aa27.41■■□□□ 1.98
COL9A3-214ENST00000490398 STAG3Q9UJ98 1225 aa27.4■■□□□ 1.98
COL9A3-214ENST00000490398 TXNDC2Q86VQ3 553 aa27.39■■□□□ 1.98
COL9A3-214ENST00000490398 SLC52A1Q9NWF4 448 aa27.39■■□□□ 1.98
COL9A3-214ENST00000490398 TMEM2Q9UHN6 1383 aa27.38■■□□□ 1.97
COL9A3-214ENST00000490398 SCAF11Q99590 1463 aaKnown RBP27.37■■□□□ 1.97
COL9A3-214ENST00000490398 ADGRB3O60242 1522 aa27.36■■□□□ 1.97
COL9A3-214ENST00000490398 IQGAP1P46940 1657 aa27.34■■□□□ 1.97
COL9A3-214ENST00000490398 KDM5AP29375 1690 aaKnown RBP27.32■■□□□ 1.96
COL9A3-214ENST00000490398 TRIM52Q96A61 297 aa27.31■■□□□ 1.96
COL9A3-214ENST00000490398 EID1Q9Y6B2 187 aa27.3■■□□□ 1.96
COL9A3-214ENST00000490398 TMEM131LA2VDJ0 1609 aa27.28■■□□□ 1.96
COL9A3-214ENST00000490398 CHGAP10645 457 aaKnown RBP27.28■■□□□ 1.96
COL9A3-214ENST00000490398 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
COL9A3-214ENST00000490398 MYO5BQ9ULV0 1848 aa27.25■■□□□ 1.95
COL9A3-214ENST00000490398 ZFYVE9O95405 1425 aa27.24■■□□□ 1.95
COL9A3-214ENST00000490398 IQSEC2Q5JU85 1478 aa27.22■■□□□ 1.95
COL9A3-214ENST00000490398 RIMS2Q9UQ26 1411 aa27.22■■□□□ 1.95
COL9A3-214ENST00000490398 STRCP1A6NGW2 1772 aa27.22■■□□□ 1.95
COL9A3-214ENST00000490398 NUTM2DQ5VT03 806 aaPredicted RBP27.21■■□□□ 1.95
COL9A3-214ENST00000490398 SPHKAPQ2M3C7 1700 aa27.21■■□□□ 1.95
COL9A3-214ENST00000490398 SLC26A8Q96RN1 970 aa27.2■■□□□ 1.94
COL9A3-214ENST00000490398 SLC4A1APQ9BWU0 796 aaKnown RBP27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms