RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 MLH3Q9UHC1 1453 aa17.12■□□□□ 0.33
TRIM40-208ENST00000489892 RIMS1Q86UR5 1692 aaKnown RBP17.11■□□□□ 0.33
TRIM40-208ENST00000489892 AFAP1Q8N556 730 aa17.1■□□□□ 0.33
TRIM40-208ENST00000489892 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
TRIM40-208ENST00000489892 ZMYM4Q5VZL5 1548 aa17.08■□□□□ 0.32
TRIM40-208ENST00000489892 TRIM52Q96A61 297 aa17.08■□□□□ 0.32
TRIM40-208ENST00000489892 MAGI2Q86UL8 1455 aa17.07■□□□□ 0.32
TRIM40-208ENST00000489892 HSPA2P54652 639 aa17.07■□□□□ 0.32
TRIM40-208ENST00000489892 EIF2AK4Q9P2K8 1649 aaKnown RBP17.04■□□□□ 0.32
TRIM40-208ENST00000489892 KDM5DQ9BY66 1539 aa17.04■□□□□ 0.32
TRIM40-208ENST00000489892 KIDINS220Q9ULH0 1771 aa17.03■□□□□ 0.32
TRIM40-208ENST00000489892 DHX29Q7Z478 1369 aaKnown RBP17.02■□□□□ 0.32
TRIM40-208ENST00000489892 UNC13BO14795 1591 aa17.02■□□□□ 0.31
TRIM40-208ENST00000489892 PLPPR3Q6T4P5 718 aa17.01■□□□□ 0.31
TRIM40-208ENST00000489892 FER1L4A9Z1Z3 1794 aa17.01■□□□□ 0.31
TRIM40-208ENST00000489892 YEATS2Q9ULM3 1422 aa17.01■□□□□ 0.31
TRIM40-208ENST00000489892 A2MP01023 1474 aa17■□□□□ 0.31
TRIM40-208ENST00000489892 NUP155O75694 1391 aa17■□□□□ 0.31
TRIM40-208ENST00000489892 MPHOSPH9Q99550 1183 aa16.99■□□□□ 0.31
TRIM40-208ENST00000489892 SIGLEC1Q9BZZ2 1709 aa16.99■□□□□ 0.31
TRIM40-208ENST00000489892 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
TRIM40-208ENST00000489892 KANK1Q14678 1352 aa16.98■□□□□ 0.31
TRIM40-208ENST00000489892 MLECQ14165 292 aa16.97■□□□□ 0.31
TRIM40-208ENST00000489892 TIMELESSQ9UNS1 1208 aa16.96■□□□□ 0.31
TRIM40-208ENST00000489892 PZPP20742 1482 aa16.95■□□□□ 0.3
TRIM40-208ENST00000489892 DEPDC5O75140 1603 aa16.95■□□□□ 0.3
TRIM40-208ENST00000489892 IQGAP3Q86VI3 1631 aa16.95■□□□□ 0.3
TRIM40-208ENST00000489892 ABCA6Q8N139 1617 aa16.95■□□□□ 0.3
TRIM40-208ENST00000489892 DIP2CQ9Y2E4 1556 aa16.94■□□□□ 0.3
TRIM40-208ENST00000489892 REREQ9P2R6 1566 aa16.94■□□□□ 0.3
TRIM40-208ENST00000489892 FAM135AQ9P2D6 1515 aa16.93■□□□□ 0.3
TRIM40-208ENST00000489892 ATP10AO60312 1499 aa16.93■□□□□ 0.3
TRIM40-208ENST00000489892 RNF17Q9BXT8 1623 aaKnown RBP16.92■□□□□ 0.3
TRIM40-208ENST00000489892 PRDM15P57071 1507 aaPredicted RBP16.91■□□□□ 0.3
TRIM40-208ENST00000489892 KIF3BO15066 747 aa16.91■□□□□ 0.3
TRIM40-208ENST00000489892 PREX1Q8TCU6 1659 aa16.88■□□□□ 0.29
TRIM40-208ENST00000489892 AGLP35573 1532 aa16.88■□□□□ 0.29
TRIM40-208ENST00000489892 PKD2Q13563 968 aa16.88■□□□□ 0.29
TRIM40-208ENST00000489892 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.88■□□□□ 0.29
TRIM40-208ENST00000489892 VWDEQ8N2E2 1590 aa16.87■□□□□ 0.29
TRIM40-208ENST00000489892 ANKRD30BQ9BXX2 1392 aa16.86■□□□□ 0.29
TRIM40-208ENST00000489892 TET3O43151 1660 aa16.85■□□□□ 0.29
TRIM40-208ENST00000489892 PPP6R1Q9UPN7 881 aa16.85■□□□□ 0.29
TRIM40-208ENST00000489892 LMTK2Q8IWU2 1503 aa16.85■□□□□ 0.29
TRIM40-208ENST00000489892 ZC3H13Q5T200 1668 aaKnown RBP16.83■□□□□ 0.28
TRIM40-208ENST00000489892 MROH1Q8NDA8 1641 aa16.83■□□□□ 0.28
TRIM40-208ENST00000489892 TONSLQ96HA7 1378 aa16.83■□□□□ 0.28
TRIM40-208ENST00000489892 RPRD2Q5VT52 1461 aaKnown RBP16.81■□□□□ 0.28
TRIM40-208ENST00000489892 SETD1BQ9UPS6 1966 aaKnown RBP16.79■□□□□ 0.28
TRIM40-208ENST00000489892 CEBPAP49715 358 aaPredicted RBP16.79■□□□□ 0.28
TRIM40-208ENST00000489892 NEUROD1Q13562 356 aa16.79■□□□□ 0.28
TRIM40-208ENST00000489892 ESF1Q9H501 851 aaKnown RBP16.79■□□□□ 0.28
TRIM40-208ENST00000489892 EFCAB6Q5THR3 1501 aa16.79■□□□□ 0.28
TRIM40-208ENST00000489892 UHRF1BP1Q6BDS2 1440 aa16.79■□□□□ 0.28
TRIM40-208ENST00000489892 GGT6Q6P531 493 aa16.78■□□□□ 0.28
TRIM40-208ENST00000489892 CCDC144AA2RUR9 1427 aa16.78■□□□□ 0.28
TRIM40-208ENST00000489892 WASHC2CQ9Y4E1 1318 aa16.77■□□□□ 0.28
TRIM40-208ENST00000489892 ABCC3O15438 1527 aa16.76■□□□□ 0.27
TRIM40-208ENST00000489892 C3P01024 1663 aa16.76■□□□□ 0.27
TRIM40-208ENST00000489892 FOXD1Q16676 465 aa16.76■□□□□ 0.27
TRIM40-208ENST00000489892 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
TRIM40-208ENST00000489892 STRCQ7RTU9 1775 aa16.76■□□□□ 0.27
TRIM40-208ENST00000489892 MED1Q15648 1581 aaPredicted RBP16.74■□□□□ 0.27
TRIM40-208ENST00000489892 ARHGAP31Q2M1Z3 1444 aa16.74■□□□□ 0.27
TRIM40-208ENST00000489892 DMRT2Q9Y5R5 561 aa16.74■□□□□ 0.27
TRIM40-208ENST00000489892 E9PCH4 1651 aa16.74■□□□□ 0.27
TRIM40-208ENST00000489892 TRPM2O94759 1503 aa16.74■□□□□ 0.27
TRIM40-208ENST00000489892 PTPRTO14522 1441 aa16.73■□□□□ 0.27
TRIM40-208ENST00000489892 CEP152O94986 1710 aa16.73■□□□□ 0.27
TRIM40-208ENST00000489892 SPHKAPQ2M3C7 1700 aa16.73■□□□□ 0.27
TRIM40-208ENST00000489892 CAMSAP1Q5T5Y3 1602 aa16.72■□□□□ 0.27
TRIM40-208ENST00000489892 LTBP4Q8N2S1 1624 aa16.71■□□□□ 0.27
TRIM40-208ENST00000489892 IQSEC2Q5JU85 1478 aa16.71■□□□□ 0.27
TRIM40-208ENST00000489892 CNTLNQ9NXG0 1405 aa16.7■□□□□ 0.26
TRIM40-208ENST00000489892 NPATQ14207 1427 aa16.68■□□□□ 0.26
TRIM40-208ENST00000489892 NEURL4Q96JN8 1562 aa16.68■□□□□ 0.26
TRIM40-208ENST00000489892 PLA2R1Q13018 1463 aa16.67■□□□□ 0.26
TRIM40-208ENST00000489892 STAC3Q96MF2 364 aa16.67■□□□□ 0.26
TRIM40-208ENST00000489892 MROH2AA6NES4 1674 aa16.66■□□□□ 0.26
TRIM40-208ENST00000489892 PPP1R15AO75807 674 aaPredicted RBP16.66■□□□□ 0.26
TRIM40-208ENST00000489892 NOS1P29475 1434 aa16.63■□□□□ 0.25
TRIM40-208ENST00000489892 L3MBTL2Q969R5 705 aa16.63■□□□□ 0.25
TRIM40-208ENST00000489892 SLC52A1Q9NWF4 448 aa16.61■□□□□ 0.25
TRIM40-208ENST00000489892 CLTCQ00610 1675 aaKnown RBP16.61■□□□□ 0.25
TRIM40-208ENST00000489892 CLTCL1P53675 1640 aa16.6■□□□□ 0.25
TRIM40-208ENST00000489892 KIF1BO60333 1816 aa16.59■□□□□ 0.25
TRIM40-208ENST00000489892 SPATA31E1Q6ZUB1 1445 aa16.58■□□□□ 0.24
TRIM40-208ENST00000489892 ERVK-7P63135 1459 aa16.58■□□□□ 0.24
TRIM40-208ENST00000489892 ZMYM3Q14202 1370 aa16.57■□□□□ 0.24
TRIM40-208ENST00000489892 MYO3AQ8NEV4 1616 aa16.56■□□□□ 0.24
TRIM40-208ENST00000489892 ZNF142P52746 1687 aaPredicted RBP16.56■□□□□ 0.24
TRIM40-208ENST00000489892 PIK3C2BO00750 1634 aa16.56■□□□□ 0.24
TRIM40-208ENST00000489892 UBAP1LF5GYI3 381 aa16.55■□□□□ 0.24
TRIM40-208ENST00000489892 RPGRIP1LQ68CZ1 1315 aa16.54■□□□□ 0.24
TRIM40-208ENST00000489892 ADGRB3O60242 1522 aa16.54■□□□□ 0.24
TRIM40-208ENST00000489892 SYNMO15061 1565 aa16.53■□□□□ 0.24
TRIM40-208ENST00000489892 DCAF11Q8TEB1 546 aa16.53■□□□□ 0.24
TRIM40-208ENST00000489892 CEP170BQ9Y4F5 1589 aaPredicted RBP16.52■□□□□ 0.24
TRIM40-208ENST00000489892 ZNF316A6NFI3 1004 aaPredicted RBP16.52■□□□□ 0.24
TRIM40-208ENST00000489892 CFAP65Q6ZU64 1925 aaKnown RBP16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms