RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 TNRQ92752 1358 aa12.43□□□□□ -0.42
COL9A1-209ENST00000489861 A2MP01023 1474 aa12.43□□□□□ -0.42
COL9A1-209ENST00000489861 FAM135BQ49AJ0 1406 aa12.43□□□□□ -0.42
COL9A1-209ENST00000489861 CSRNP3Q8WYN3 585 aa12.42□□□□□ -0.42
COL9A1-209ENST00000489861 ATP7AQ04656 1500 aa12.42□□□□□ -0.42
COL9A1-209ENST00000489861 ZC3H13Q5T200 1668 aaKnown RBP12.42□□□□□ -0.42
COL9A1-209ENST00000489861 SPAG9O60271 1321 aaKnown RBP12.41□□□□□ -0.42
COL9A1-209ENST00000489861 CLIP1P30622 1438 aa12.41□□□□□ -0.42
COL9A1-209ENST00000489861 INO80Q9ULG1 1556 aaPredicted RBP12.4□□□□□ -0.42
COL9A1-209ENST00000489861 THEMISQ8N1K5 641 aaPredicted RBP12.4□□□□□ -0.42
COL9A1-209ENST00000489861 TRIM52Q96A61 297 aa12.4□□□□□ -0.42
COL9A1-209ENST00000489861 ROBO1Q9Y6N7 1651 aa12.4□□□□□ -0.42
COL9A1-209ENST00000489861 SYCP2Q9BX26 1530 aa12.4□□□□□ -0.42
COL9A1-209ENST00000489861 UGGT1Q9NYU2 1555 aa12.39□□□□□ -0.43
COL9A1-209ENST00000489861 HNRNPMP52272 730 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL9A1-209ENST00000489861 FAM135AQ9P2D6 1515 aa12.37□□□□□ -0.43
COL9A1-209ENST00000489861 ADGBQ8N7X0 1667 aa12.36□□□□□ -0.43
COL9A1-209ENST00000489861 PZPP20742 1482 aa12.36□□□□□ -0.43
COL9A1-209ENST00000489861 ZNF777Q9ULD5 760 aaPredicted RBP12.35□□□□□ -0.43
COL9A1-209ENST00000489861 MIA2Q96PC5 1412 aa12.35□□□□□ -0.43
COL9A1-209ENST00000489861 NLRP1Q9C000 1473 aa12.34□□□□□ -0.43
COL9A1-209ENST00000489861 FMN1Q68DA7 1419 aa12.34□□□□□ -0.43
COL9A1-209ENST00000489861 PHLPP1O60346 1717 aa12.34□□□□□ -0.43
COL9A1-209ENST00000489861 LRP6O75581 1613 aa12.33□□□□□ -0.43
COL9A1-209ENST00000489861 JCADQ9P266 1359 aa12.3□□□□□ -0.44
COL9A1-209ENST00000489861 KDM5DQ9BY66 1539 aa12.3□□□□□ -0.44
COL9A1-209ENST00000489861 CFAP65Q6ZU64 1925 aaKnown RBP12.29□□□□□ -0.44
COL9A1-209ENST00000489861 ZNF772Q68DY9 489 aaPredicted RBP12.29□□□□□ -0.44
COL9A1-209ENST00000489861 ARHGAP35Q9NRY4 1499 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 MAP3K1Q13233 1512 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 GPATCH8Q9UKJ3 1502 aaKnown RBP12.28□□□□□ -0.44
COL9A1-209ENST00000489861 SETBP1Q9Y6X0 1596 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 MSH5O43196 834 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 RXRBP28702 533 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 TMEM94Q12767 1356 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 KIAA1107Q9UPP5 1409 aa12.28□□□□□ -0.44
COL9A1-209ENST00000489861 CDK12Q9NYV4 1490 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-209ENST00000489861 COL16A1Q07092 1604 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-209ENST00000489861 RBM33Q96EV2 1170 aaKnown RBP12.27□□□□□ -0.45
COL9A1-209ENST00000489861 UBR1Q8IWV7 1749 aa12.27□□□□□ -0.45
COL9A1-209ENST00000489861 LTKP29376 864 aa12.26□□□□□ -0.45
COL9A1-209ENST00000489861 SCAF11Q99590 1463 aaKnown RBP12.26□□□□□ -0.45
COL9A1-209ENST00000489861 KIF3BO15066 747 aa12.25□□□□□ -0.45
COL9A1-209ENST00000489861 WASHC2CQ9Y4E1 1318 aa12.25□□□□□ -0.45
COL9A1-209ENST00000489861 DHX29Q7Z478 1369 aaKnown RBP12.25□□□□□ -0.45
COL9A1-209ENST00000489861 MEX3CQ5U5Q3 659 aaKnown RBP12.24□□□□□ -0.45
COL9A1-209ENST00000489861 LRRC9Q6ZRR7 1453 aa12.24□□□□□ -0.45
COL9A1-209ENST00000489861 NCOA2Q15596 1464 aa12.23□□□□□ -0.45
COL9A1-209ENST00000489861 PLEKHH2Q8IVE3 1493 aa12.23□□□□□ -0.45
COL9A1-209ENST00000489861 ARHGAP23Q9P227 1491 aa12.22□□□□□ -0.45
COL9A1-209ENST00000489861 SPATA31A6Q5VVP1 1343 aa12.22□□□□□ -0.45
COL9A1-209ENST00000489861 RGS12O14924 1447 aa12.21□□□□□ -0.45
COL9A1-209ENST00000489861 TXNDC2Q86VQ3 553 aa12.21□□□□□ -0.45
COL9A1-209ENST00000489861 SLAIN2Q9P270 581 aa12.21□□□□□ -0.45
COL9A1-209ENST00000489861 SHPRHQ149N8 1683 aa12.21□□□□□ -0.45
COL9A1-209ENST00000489861 CFDP1Q9UEE9 299 aaPredicted RBP12.2□□□□□ -0.46
COL9A1-209ENST00000489861 ZRANB1Q9UGI0 708 aa12.2□□□□□ -0.46
COL9A1-209ENST00000489861 SLIT1O75093 1534 aa12.2□□□□□ -0.46
COL9A1-209ENST00000489861 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
COL9A1-209ENST00000489861 ZNF644Q9H582 1327 aaPredicted RBP12.19□□□□□ -0.46
COL9A1-209ENST00000489861 TIAM1Q13009 1591 aa12.19□□□□□ -0.46
COL9A1-209ENST00000489861 PROSER2Q86WR7 435 aaPredicted RBP12.19□□□□□ -0.46
COL9A1-209ENST00000489861 ERVK-7P63135 1459 aa12.19□□□□□ -0.46
COL9A1-209ENST00000489861 CCDC18Q5T9S5 1454 aa12.19□□□□□ -0.46
COL9A1-209ENST00000489861 MBD5Q9P267 1494 aa12.19□□□□□ -0.46
COL9A1-209ENST00000489861 RTEL1-TNFRSF6BF6WH68 1400 aa12.19□□□□□ -0.46
COL9A1-209ENST00000489861 KCNA6P17658 529 aa12.18□□□□□ -0.46
COL9A1-209ENST00000489861 EEA1Q15075 1411 aa12.18□□□□□ -0.46
COL9A1-209ENST00000489861 PRDM15P57071 1507 aaPredicted RBP12.17□□□□□ -0.46
COL9A1-209ENST00000489861 EP400Q96L91 3159 aa12.17□□□□□ -0.46
COL9A1-209ENST00000489861 AFF2P51816 1311 aa12.16□□□□□ -0.46
COL9A1-209ENST00000489861 NUTM2BA6NNL0 878 aaPredicted RBP12.16□□□□□ -0.46
COL9A1-209ENST00000489861 NUTM2EB1AL46 878 aaPredicted RBP12.16□□□□□ -0.46
COL9A1-209ENST00000489861 NUTM2DQ5VT03 806 aaPredicted RBP12.16□□□□□ -0.46
COL9A1-209ENST00000489861 NUTM2AQ8IVF1 878 aaPredicted RBP12.16□□□□□ -0.46
COL9A1-209ENST00000489861 ABCC3O15438 1527 aa12.16□□□□□ -0.46
COL9A1-209ENST00000489861 CASKIN1Q8WXD9 1431 aa12.15□□□□□ -0.46
COL9A1-209ENST00000489861 EHMT2Q96KQ7 1210 aa12.15□□□□□ -0.46
COL9A1-209ENST00000489861 MSH6P52701 1360 aa12.15□□□□□ -0.46
COL9A1-209ENST00000489861 DIP2AQ14689 1571 aa12.13□□□□□ -0.47
COL9A1-209ENST00000489861 NWD1Q149M9 1564 aa12.13□□□□□ -0.47
COL9A1-209ENST00000489861 TET3O43151 1660 aa12.13□□□□□ -0.47
COL9A1-209ENST00000489861 KDM5AP29375 1690 aaKnown RBP12.13□□□□□ -0.47
COL9A1-209ENST00000489861 AHDC1Q5TGY3 1603 aaPredicted RBP12.13□□□□□ -0.47
COL9A1-209ENST00000489861 SLC26A8Q96RN1 970 aa12.13□□□□□ -0.47
COL9A1-209ENST00000489861 CCNB3Q8WWL7 1395 aa12.13□□□□□ -0.47
COL9A1-209ENST00000489861 CEP152O94986 1710 aa12.12□□□□□ -0.47
COL9A1-209ENST00000489861 UBTFP17480 764 aaKnown RBP12.12□□□□□ -0.47
COL9A1-209ENST00000489861 RBM6P78332 1123 aaKnown RBP12.12□□□□□ -0.47
COL9A1-209ENST00000489861 QTRT2Q9H974 415 aaKnown RBP12.12□□□□□ -0.47
COL9A1-209ENST00000489861 EID1Q9Y6B2 187 aa12.12□□□□□ -0.47
COL9A1-209ENST00000489861 NKTRP30414 1462 aaKnown RBP12.12□□□□□ -0.47
COL9A1-209ENST00000489861 ATAD2Q6PL18 1390 aa12.11□□□□□ -0.47
COL9A1-209ENST00000489861 PIK3C2BO00750 1634 aa12.11□□□□□ -0.47
COL9A1-209ENST00000489861 TMEM2Q9UHN6 1383 aa12.09□□□□□ -0.47
COL9A1-209ENST00000489861 LRP5O75197 1615 aa12.09□□□□□ -0.47
COL9A1-209ENST00000489861 CHD2O14647 1828 aaKnown RBP12.09□□□□□ -0.47
COL9A1-209ENST00000489861 MROH1Q8NDA8 1641 aa12.08□□□□□ -0.48
COL9A1-209ENST00000489861 CAMSAP2Q08AD1 1489 aa12.08□□□□□ -0.48
COL9A1-209ENST00000489861 MAST1Q9Y2H9 1570 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms