RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ADGRL2O95490 1459 aa26.47■■□□□ 1.83
MDC1-206ENST00000489540 FAM135AQ9P2D6 1515 aa26.44■■□□□ 1.82
MDC1-206ENST00000489540 RRBP1Q9P2E9 1410 aaKnown RBP26.44■■□□□ 1.82
MDC1-206ENST00000489540 PTPRKQ15262 1439 aa26.43■■□□□ 1.82
MDC1-206ENST00000489540 ITGAEP38570 1179 aa26.43■■□□□ 1.82
MDC1-206ENST00000489540 LMTK3Q96Q04 1460 aa26.43■■□□□ 1.82
MDC1-206ENST00000489540 NPATQ14207 1427 aa26.43■■□□□ 1.82
MDC1-206ENST00000489540 MROH2AA6NES4 1674 aa26.43■■□□□ 1.82
MDC1-206ENST00000489540 EIF2AK4Q9P2K8 1649 aaKnown RBP26.42■■□□□ 1.82
MDC1-206ENST00000489540 C3P01024 1663 aa26.41■■□□□ 1.82
MDC1-206ENST00000489540 ROCK1Q13464 1354 aa26.41■■□□□ 1.82
MDC1-206ENST00000489540 KDM5DQ9BY66 1539 aa26.41■■□□□ 1.82
MDC1-206ENST00000489540 CLTCQ00610 1675 aaKnown RBP26.4■■□□□ 1.82
MDC1-206ENST00000489540 UHRF1BP1Q6BDS2 1440 aa26.39■■□□□ 1.81
MDC1-206ENST00000489540 RNF17Q9BXT8 1623 aaKnown RBP26.38■■□□□ 1.81
MDC1-206ENST00000489540 SETD1BQ9UPS6 1966 aaKnown RBP26.37■■□□□ 1.81
MDC1-206ENST00000489540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.37■■□□□ 1.812e-8■■■■■ 30.2
MDC1-206ENST00000489540 ANKRD50Q9ULJ7 1429 aa26.36■■□□□ 1.81
MDC1-206ENST00000489540 HSPA2P54652 639 aa26.36■■□□□ 1.81
MDC1-206ENST00000489540 KANK1Q14678 1352 aa26.34■■□□□ 1.81
MDC1-206ENST00000489540 FBXO31Q5XUX0 539 aaPredicted RBP26.32■■□□□ 1.8
MDC1-206ENST00000489540 ABCC3O15438 1527 aa26.32■■□□□ 1.8
MDC1-206ENST00000489540 PZPP20742 1482 aa26.31■■□□□ 1.8
MDC1-206ENST00000489540 MROH1Q8NDA8 1641 aa26.3■■□□□ 1.8
MDC1-206ENST00000489540 PREX1Q8TCU6 1659 aa26.3■■□□□ 1.8
MDC1-206ENST00000489540 PRDM15P57071 1507 aaPredicted RBP26.27■■□□□ 1.8
MDC1-206ENST00000489540 TNRQ92752 1358 aa26.27■■□□□ 1.8
MDC1-206ENST00000489540 ZC3H13Q5T200 1668 aaKnown RBP26.25■■□□□ 1.79
MDC1-206ENST00000489540 DEPDC5O75140 1603 aa26.23■■□□□ 1.79
MDC1-206ENST00000489540 ARHGAP31Q2M1Z3 1444 aa26.23■■□□□ 1.79
MDC1-206ENST00000489540 LMTK2Q8IWU2 1503 aa26.19■■□□□ 1.78
MDC1-206ENST00000489540 VWDEQ8N2E2 1590 aa26.18■■□□□ 1.78
MDC1-206ENST00000489540 DMRT2Q9Y5R5 561 aa26.17■■□□□ 1.78
MDC1-206ENST00000489540 A2ML1A8K2U0 1454 aa26.16■■□□□ 1.78
MDC1-206ENST00000489540 ERVK-7P63135 1459 aa26.16■■□□□ 1.78
MDC1-206ENST00000489540 CAMSAP1Q5T5Y3 1602 aa26.14■■□□□ 1.78
MDC1-206ENST00000489540 NLRP1Q9C000 1473 aa26.14■■□□□ 1.78
MDC1-206ENST00000489540 CEP152O94986 1710 aa26.14■■□□□ 1.77
MDC1-206ENST00000489540 SPATA31D1Q6ZQQ2 1576 aa26.13■■□□□ 1.77
MDC1-206ENST00000489540 NAIPQ13075 1403 aa26.13■■□□□ 1.77
MDC1-206ENST00000489540 MYO3AQ8NEV4 1616 aa26.13■■□□□ 1.77
MDC1-206ENST00000489540 NUP155O75694 1391 aa26.13■■□□□ 1.77
MDC1-206ENST00000489540 CEP170BQ9Y4F5 1589 aaPredicted RBP26.12■■□□□ 1.77
MDC1-206ENST00000489540 THEMISQ8N1K5 641 aaPredicted RBP26.12■■□□□ 1.77
MDC1-206ENST00000489540 HFM1A2PYH4 1435 aa26.11■■□□□ 1.77
MDC1-206ENST00000489540 UNC13BO14795 1591 aa26.08■■□□□ 1.77
MDC1-206ENST00000489540 PKD2Q13563 968 aa26.08■■□□□ 1.77
MDC1-206ENST00000489540 ZNF142P52746 1687 aaPredicted RBP26.07■■□□□ 1.76
MDC1-206ENST00000489540 PLA2R1Q13018 1463 aa26.06■■□□□ 1.76
MDC1-206ENST00000489540 RPRD2Q5VT52 1461 aaKnown RBP26.06■■□□□ 1.76
MDC1-206ENST00000489540 EFCAB6Q5THR3 1501 aa26.05■■□□□ 1.76
MDC1-206ENST00000489540 NCKAP5LQ9HCH0 1330 aa26.05■■□□□ 1.76
MDC1-206ENST00000489540 SLC52A1Q9NWF4 448 aa26.03■■□□□ 1.76
MDC1-206ENST00000489540 PTPRTO14522 1441 aa26.03■■□□□ 1.76
MDC1-206ENST00000489540 NOS1P29475 1434 aa26.03■■□□□ 1.76
MDC1-206ENST00000489540 UGGT1Q9NYU2 1555 aa26.02■■□□□ 1.76
MDC1-206ENST00000489540 IDI1Q13907 227 aa26.01■■□□□ 1.75
MDC1-206ENST00000489540 ANKLE2Q86XL3 938 aa26.01■■□□□ 1.75
MDC1-206ENST00000489540 STRCQ7RTU9 1775 aa26■■□□□ 1.75
MDC1-206ENST00000489540 TRIM52Q96A61 297 aa25.99■■□□□ 1.75
MDC1-206ENST00000489540 TET3O43151 1660 aa25.99■■□□□ 1.75
MDC1-206ENST00000489540 STAG3Q9UJ98 1225 aa25.98■■□□□ 1.75
MDC1-206ENST00000489540 IQGAP3Q86VI3 1631 aa25.98■■□□□ 1.75
MDC1-206ENST00000489540 CFAP65Q6ZU64 1925 aaKnown RBP25.97■■□□□ 1.75
MDC1-206ENST00000489540 GCC2Q8IWJ2 1684 aa25.96■■□□□ 1.75
MDC1-206ENST00000489540 ACIN1Q9UKV3 1341 aaKnown RBP25.94■■□□□ 1.74
MDC1-206ENST00000489540 SYNMO15061 1565 aa25.9■■□□□ 1.74
MDC1-206ENST00000489540 SLC4A1APQ9BWU0 796 aaKnown RBP25.88■■□□□ 1.73
MDC1-206ENST00000489540 EID1Q9Y6B2 187 aa25.88■■□□□ 1.73
MDC1-206ENST00000489540 SETD5Q9C0A6 1442 aa25.88■■□□□ 1.73
MDC1-206ENST00000489540 TXNDC2Q86VQ3 553 aa25.88■■□□□ 1.73
MDC1-206ENST00000489540 TMEM2Q9UHN6 1383 aa25.86■■□□□ 1.73
MDC1-206ENST00000489540 E9PCH4 1651 aa25.86■■□□□ 1.73
MDC1-206ENST00000489540 UBR1Q8IWV7 1749 aa25.84■■□□□ 1.73
MDC1-206ENST00000489540 PIK3C2BO00750 1634 aa25.84■■□□□ 1.73
MDC1-206ENST00000489540 MED14O60244 1454 aa25.84■■□□□ 1.73
MDC1-206ENST00000489540 ARHGAP23Q9P227 1491 aa25.83■■□□□ 1.73
MDC1-206ENST00000489540 LTKP29376 864 aa25.83■■□□□ 1.73
MDC1-206ENST00000489540 SLIT1O75093 1534 aa25.83■■□□□ 1.73
MDC1-206ENST00000489540 NPHP4O75161 1426 aaPredicted RBP25.83■■□□□ 1.72
MDC1-206ENST00000489540 CHGAP10645 457 aaKnown RBP25.81■■□□□ 1.72
MDC1-206ENST00000489540 HDGFP51858 240 aaKnown RBP25.81■■□□□ 1.72
MDC1-206ENST00000489540 CERKQ8TCT0 537 aa25.8■■□□□ 1.72
MDC1-206ENST00000489540 SCAF11Q99590 1463 aaKnown RBP25.8■■□□□ 1.72
MDC1-206ENST00000489540 KDM5AP29375 1690 aaKnown RBP25.8■■□□□ 1.72
MDC1-206ENST00000489540 MPHOSPH9Q99550 1183 aa25.8■■□□□ 1.72
MDC1-206ENST00000489540 ADGRB3O60242 1522 aa25.79■■□□□ 1.72
MDC1-206ENST00000489540 NEURL4Q96JN8 1562 aa25.79■■□□□ 1.72
MDC1-206ENST00000489540 RAB3GAP2Q9H2M9 1393 aa25.77■■□□□ 1.72
MDC1-206ENST00000489540 HRCP23327 699 aa25.77■■□□□ 1.72
MDC1-206ENST00000489540 ZNF335Q9H4Z2 1342 aaPredicted RBP25.76■■□□□ 1.71
MDC1-206ENST00000489540 POLR1AO95602 1720 aaPredicted RBP25.75■■□□□ 1.71
MDC1-206ENST00000489540 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.74■■□□□ 1.71
MDC1-206ENST00000489540 TMEM131LA2VDJ0 1609 aa25.7■■□□□ 1.7
MDC1-206ENST00000489540 RIMS2Q9UQ26 1411 aa25.7■■□□□ 1.7
MDC1-206ENST00000489540 PPP1R15AO75807 674 aaPredicted RBP25.7■■□□□ 1.7
MDC1-206ENST00000489540 FOXD1Q16676 465 aa25.7■■□□□ 1.7
MDC1-206ENST00000489540 LTBP4Q8N2S1 1624 aa25.69■■□□□ 1.7
MDC1-206ENST00000489540 TRPM2O94759 1503 aa25.69■■□□□ 1.7
MDC1-206ENST00000489540 FBXO41Q8TF61 875 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms