RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 ITGAEP38570 1179 aa24.09■■□□□ 1.45
LMX1A-204ENST00000489443 NCOA1Q15788 1441 aa24.09■■□□□ 1.45
LMX1A-204ENST00000489443 WASHC2CQ9Y4E1 1318 aa24.09■■□□□ 1.45
LMX1A-204ENST00000489443 EIF2AK4Q9P2K8 1649 aaKnown RBP24.08■■□□□ 1.45
LMX1A-204ENST00000489443 LMTK3Q96Q04 1460 aa24.07■■□□□ 1.44
LMX1A-204ENST00000489443 PTPRKQ15262 1439 aa24.06■■□□□ 1.44
LMX1A-204ENST00000489443 RNF17Q9BXT8 1623 aaKnown RBP24.05■■□□□ 1.44
LMX1A-204ENST00000489443 ADGRL2O95490 1459 aa24.05■■□□□ 1.44
LMX1A-204ENST00000489443 ERBINQ96RT1 1412 aa24.04■■□□□ 1.44
LMX1A-204ENST00000489443 PREX1Q8TCU6 1659 aa24.04■■□□□ 1.44
LMX1A-204ENST00000489443 KDM5DQ9BY66 1539 aa24.04■■□□□ 1.44
LMX1A-204ENST00000489443 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.03■■□□□ 1.44
LMX1A-204ENST00000489443 HSPA2P54652 639 aa24.03■■□□□ 1.44
LMX1A-204ENST00000489443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.43
LMX1A-204ENST00000489443 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
LMX1A-204ENST00000489443 RRBP1Q9P2E9 1410 aaKnown RBP24.01■■□□□ 1.43
LMX1A-204ENST00000489443 FAM135AQ9P2D6 1515 aa24■■□□□ 1.43
LMX1A-204ENST00000489443 NPATQ14207 1427 aa23.99■■□□□ 1.43
LMX1A-204ENST00000489443 MROH1Q8NDA8 1641 aa23.99■■□□□ 1.43
LMX1A-204ENST00000489443 ABCC3O15438 1527 aa23.96■■□□□ 1.43
LMX1A-204ENST00000489443 FBXO31Q5XUX0 539 aaPredicted RBP23.96■■□□□ 1.43
LMX1A-204ENST00000489443 ANKRD50Q9ULJ7 1429 aa23.95■■□□□ 1.42
LMX1A-204ENST00000489443 ROCK1Q13464 1354 aa23.95■■□□□ 1.42
LMX1A-204ENST00000489443 CEP152O94986 1710 aa23.95■■□□□ 1.42
LMX1A-204ENST00000489443 ZC3H13Q5T200 1668 aaKnown RBP23.94■■□□□ 1.42
LMX1A-204ENST00000489443 KANK1Q14678 1352 aa23.93■■□□□ 1.42
LMX1A-204ENST00000489443 PZPP20742 1482 aa23.93■■□□□ 1.42
LMX1A-204ENST00000489443 DEPDC5O75140 1603 aa23.92■■□□□ 1.42
LMX1A-204ENST00000489443 PRDM15P57071 1507 aaPredicted RBP23.92■■□□□ 1.42
LMX1A-204ENST00000489443 CFAP65Q6ZU64 1925 aaKnown RBP23.9■■□□□ 1.42
LMX1A-204ENST00000489443 CAMSAP1Q5T5Y3 1602 aa23.88■■□□□ 1.41
LMX1A-204ENST00000489443 TNRQ92752 1358 aa23.88■■□□□ 1.41
LMX1A-204ENST00000489443 MYO3AQ8NEV4 1616 aa23.87■■□□□ 1.41
LMX1A-204ENST00000489443 VWDEQ8N2E2 1590 aa23.82■■□□□ 1.4
LMX1A-204ENST00000489443 CEP170BQ9Y4F5 1589 aaPredicted RBP23.82■■□□□ 1.4
LMX1A-204ENST00000489443 ZNF142P52746 1687 aaPredicted RBP23.81■■□□□ 1.4
LMX1A-204ENST00000489443 ARHGAP31Q2M1Z3 1444 aa23.8■■□□□ 1.4
LMX1A-204ENST00000489443 ERVK-7P63135 1459 aa23.8■■□□□ 1.4
LMX1A-204ENST00000489443 A2ML1A8K2U0 1454 aa23.79■■□□□ 1.4
LMX1A-204ENST00000489443 LMTK2Q8IWU2 1503 aa23.79■■□□□ 1.4
LMX1A-204ENST00000489443 SPATA31D1Q6ZQQ2 1576 aa23.78■■□□□ 1.4
LMX1A-204ENST00000489443 STRCQ7RTU9 1775 aa23.78■■□□□ 1.4
LMX1A-204ENST00000489443 UNC13BO14795 1591 aa23.78■■□□□ 1.4
LMX1A-204ENST00000489443 NLRP1Q9C000 1473 aa23.75■■□□□ 1.39
LMX1A-204ENST00000489443 NAIPQ13075 1403 aa23.75■■□□□ 1.39
LMX1A-204ENST00000489443 NUP155O75694 1391 aa23.74■■□□□ 1.39
LMX1A-204ENST00000489443 EFCAB6Q5THR3 1501 aa23.74■■□□□ 1.39
LMX1A-204ENST00000489443 DMRT2Q9Y5R5 561 aa23.73■■□□□ 1.39
LMX1A-204ENST00000489443 TET3O43151 1660 aa23.71■■□□□ 1.39
LMX1A-204ENST00000489443 GCC2Q8IWJ2 1684 aa23.71■■□□□ 1.39
LMX1A-204ENST00000489443 NCKAP5LQ9HCH0 1330 aa23.71■■□□□ 1.39
LMX1A-204ENST00000489443 THEMISQ8N1K5 641 aaPredicted RBP23.7■■□□□ 1.38
LMX1A-204ENST00000489443 UGGT1Q9NYU2 1555 aa23.69■■□□□ 1.38
LMX1A-204ENST00000489443 HFM1A2PYH4 1435 aa23.69■■□□□ 1.38
LMX1A-204ENST00000489443 IQGAP3Q86VI3 1631 aa23.69■■□□□ 1.38
LMX1A-204ENST00000489443 PLA2R1Q13018 1463 aa23.68■■□□□ 1.38
LMX1A-204ENST00000489443 PKD2Q13563 968 aa23.67■■□□□ 1.38
LMX1A-204ENST00000489443 RPRD2Q5VT52 1461 aaKnown RBP23.65■■□□□ 1.38
LMX1A-204ENST00000489443 TRIM52Q96A61 297 aa23.64■■□□□ 1.37
LMX1A-204ENST00000489443 PTPRTO14522 1441 aa23.64■■□□□ 1.37
LMX1A-204ENST00000489443 NOS1P29475 1434 aa23.64■■□□□ 1.37
LMX1A-204ENST00000489443 SYNMO15061 1565 aa23.63■■□□□ 1.37
LMX1A-204ENST00000489443 IDI1Q13907 227 aa23.63■■□□□ 1.37
LMX1A-204ENST00000489443 STAG3Q9UJ98 1225 aa23.63■■□□□ 1.37
LMX1A-204ENST00000489443 E9PCH4 1651 aa23.63■■□□□ 1.37
LMX1A-204ENST00000489443 ANKLE2Q86XL3 938 aa23.62■■□□□ 1.37
LMX1A-204ENST00000489443 UBR1Q8IWV7 1749 aa23.62■■□□□ 1.37
LMX1A-204ENST00000489443 PIK3C2BO00750 1634 aa23.61■■□□□ 1.37
LMX1A-204ENST00000489443 SLC52A1Q9NWF4 448 aa23.59■■□□□ 1.37
LMX1A-204ENST00000489443 POLR1AO95602 1720 aaPredicted RBP23.58■■□□□ 1.37
LMX1A-204ENST00000489443 NEURL4Q96JN8 1562 aa23.52■■□□□ 1.36
LMX1A-204ENST00000489443 SLC4A1APQ9BWU0 796 aaKnown RBP23.52■■□□□ 1.36
LMX1A-204ENST00000489443 SETD5Q9C0A6 1442 aa23.51■■□□□ 1.35
LMX1A-204ENST00000489443 CHGAP10645 457 aaKnown RBP23.51■■□□□ 1.35
LMX1A-204ENST00000489443 TXNDC2Q86VQ3 553 aa23.51■■□□□ 1.35
LMX1A-204ENST00000489443 KDM5AP29375 1690 aaKnown RBP23.51■■□□□ 1.35
LMX1A-204ENST00000489443 ADGRB3O60242 1522 aa23.5■■□□□ 1.35
LMX1A-204ENST00000489443 LTKP29376 864 aa23.5■■□□□ 1.35
LMX1A-204ENST00000489443 EID1Q9Y6B2 187 aa23.5■■□□□ 1.35
LMX1A-204ENST00000489443 TMEM2Q9UHN6 1383 aa23.5■■□□□ 1.35
LMX1A-204ENST00000489443 NPHP4O75161 1426 aaPredicted RBP23.5■■□□□ 1.35
LMX1A-204ENST00000489443 SLIT1O75093 1534 aa23.49■■□□□ 1.35
LMX1A-204ENST00000489443 ARHGAP23Q9P227 1491 aa23.49■■□□□ 1.35
LMX1A-204ENST00000489443 SCAF11Q99590 1463 aaKnown RBP23.48■■□□□ 1.35
LMX1A-204ENST00000489443 SPHKAPQ2M3C7 1700 aa23.47■■□□□ 1.35
LMX1A-204ENST00000489443 MYO5BQ9ULV0 1848 aa23.47■■□□□ 1.35
LMX1A-204ENST00000489443 CERKQ8TCT0 537 aa23.47■■□□□ 1.35
LMX1A-204ENST00000489443 MED14O60244 1454 aa23.47■■□□□ 1.35
LMX1A-204ENST00000489443 ZNF335Q9H4Z2 1342 aaPredicted RBP23.46■■□□□ 1.35
LMX1A-204ENST00000489443 IQGAP1P46940 1657 aa23.44■■□□□ 1.34
LMX1A-204ENST00000489443 TMEM131LA2VDJ0 1609 aa23.44■■□□□ 1.34
LMX1A-204ENST00000489443 RAB3GAP2Q9H2M9 1393 aa23.42■■□□□ 1.34
LMX1A-204ENST00000489443 FOXD1Q16676 465 aa23.41■■□□□ 1.34
LMX1A-204ENST00000489443 MPHOSPH9Q99550 1183 aa23.41■■□□□ 1.34
LMX1A-204ENST00000489443 LTBP4Q8N2S1 1624 aa23.41■■□□□ 1.34
LMX1A-204ENST00000489443 ACIN1Q9UKV3 1341 aaKnown RBP23.4■■□□□ 1.34
LMX1A-204ENST00000489443 ILDR1Q86SU0 546 aaPredicted RBP23.39■■□□□ 1.33
LMX1A-204ENST00000489443 SENP3Q9H4L4 574 aaPredicted RBP23.39■■□□□ 1.33
LMX1A-204ENST00000489443 HDGFP51858 240 aaKnown RBP23.38■■□□□ 1.33
LMX1A-204ENST00000489443 RIMS2Q9UQ26 1411 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms