RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 SAMD9LQ8IVG5 1584 aa12.38□□□□□ -0.43
VTI1A-207ENST00000489357 ITSN2Q9NZM3 1697 aa12.38□□□□□ -0.43
VTI1A-207ENST00000489357 KIAA1107Q9UPP5 1409 aa12.37□□□□□ -0.43
VTI1A-207ENST00000489357 ABCC1P33527 1531 aa12.37□□□□□ -0.43
VTI1A-207ENST00000489357 ZMYM4Q5VZL5 1548 aa12.37□□□□□ -0.43
VTI1A-207ENST00000489357 ZNF316A6NFI3 1004 aaPredicted RBP12.37□□□□□ -0.43
VTI1A-207ENST00000489357 TIMELESSQ9UNS1 1208 aa12.37□□□□□ -0.43
VTI1A-207ENST00000489357 POGZQ7Z3K3 1410 aa12.37□□□□□ -0.43
VTI1A-207ENST00000489357 KDM5CP41229 1560 aa12.36□□□□□ -0.43
VTI1A-207ENST00000489357 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
VTI1A-207ENST00000489357 AMER1Q5JTC6 1135 aaPredicted RBP12.36□□□□□ -0.43
VTI1A-207ENST00000489357 CHADLQ6NUI6 762 aa12.36□□□□□ -0.43
VTI1A-207ENST00000489357 SPOCK2Q92563 424 aa12.36□□□□□ -0.43
VTI1A-207ENST00000489357 HFM1A2PYH4 1435 aa12.36□□□□□ -0.43
VTI1A-207ENST00000489357 CFDP1Q9UEE9 299 aaPredicted RBP12.35□□□□□ -0.43
VTI1A-207ENST00000489357 PTPN23Q9H3S7 1636 aa12.35□□□□□ -0.43
VTI1A-207ENST00000489357 MAGI2Q86UL8 1455 aa12.34□□□□□ -0.43
VTI1A-207ENST00000489357 MBD5Q9P267 1494 aa12.34□□□□□ -0.43
VTI1A-207ENST00000489357 PRKAR2AP13861 404 aaKnown RBP12.34□□□□□ -0.43
VTI1A-207ENST00000489357 PIP4P2Q8N4L2 257 aa12.34□□□□□ -0.43
VTI1A-207ENST00000489357 TRAPPC8Q9Y2L5 1435 aa12.34□□□□□ -0.43
VTI1A-207ENST00000489357 PLEKHH2Q8IVE3 1493 aa12.34□□□□□ -0.43
VTI1A-207ENST00000489357 FAM50AQ14320 339 aaKnown RBP12.33□□□□□ -0.44
VTI1A-207ENST00000489357 AFAP1Q8N556 730 aa12.33□□□□□ -0.44
VTI1A-207ENST00000489357 ZNF644Q9H582 1327 aaPredicted RBP12.33□□□□□ -0.44
VTI1A-207ENST00000489357 ZNF518AQ6AHZ1 1483 aa12.33□□□□□ -0.44
VTI1A-207ENST00000489357 MLH3Q9UHC1 1453 aa12.32□□□□□ -0.44
VTI1A-207ENST00000489357 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
VTI1A-207ENST00000489357 DIEXFQ68CQ4 756 aaKnown RBP12.31□□□□□ -0.44
VTI1A-207ENST00000489357 GCC2Q8IWJ2 1684 aa12.3□□□□□ -0.44
VTI1A-207ENST00000489357 HNRNPMP52272 730 aaKnown RBP eCLIP12.3□□□□□ -0.44
VTI1A-207ENST00000489357 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
VTI1A-207ENST00000489357 SYCP2Q9BX26 1530 aa12.3□□□□□ -0.44
VTI1A-207ENST00000489357 KIDINS220Q9ULH0 1771 aa12.3□□□□□ -0.44
VTI1A-207ENST00000489357 ARHGEF40Q8TER5 1519 aa12.29□□□□□ -0.44
VTI1A-207ENST00000489357 RSPH4AQ5TD94 716 aa12.29□□□□□ -0.44
VTI1A-207ENST00000489357 YEATS2Q9ULM3 1422 aa12.28□□□□□ -0.44
VTI1A-207ENST00000489357 CAMSAP2Q08AD1 1489 aa12.28□□□□□ -0.44
VTI1A-207ENST00000489357 ARHGEF5Q12774 1597 aa12.28□□□□□ -0.44
VTI1A-207ENST00000489357 ZNF777Q9ULD5 760 aaPredicted RBP12.28□□□□□ -0.44
VTI1A-207ENST00000489357 HECW2Q9P2P5 1572 aa12.27□□□□□ -0.44
VTI1A-207ENST00000489357 SIGLEC1Q9BZZ2 1709 aa12.27□□□□□ -0.45
VTI1A-207ENST00000489357 ZFYVE16Q7Z3T8 1539 aa12.27□□□□□ -0.45
VTI1A-207ENST00000489357 REREQ9P2R6 1566 aa12.26□□□□□ -0.45
VTI1A-207ENST00000489357 ITGAEP38570 1179 aa12.26□□□□□ -0.45
VTI1A-207ENST00000489357 FARP1Q9Y4F1 1045 aaPredicted RBP12.26□□□□□ -0.45
VTI1A-207ENST00000489357 RTEL1-TNFRSF6BF6WH68 1400 aa12.26□□□□□ -0.45
VTI1A-207ENST00000489357 NAIPQ13075 1403 aa12.26□□□□□ -0.45
VTI1A-207ENST00000489357 ATP10AO60312 1499 aa12.26□□□□□ -0.45
VTI1A-207ENST00000489357 INO80Q9ULG1 1556 aaPredicted RBP12.26□□□□□ -0.45
VTI1A-207ENST00000489357 ROCK1Q13464 1354 aa12.25□□□□□ -0.45
VTI1A-207ENST00000489357 DIP2CQ9Y2E4 1556 aa12.25□□□□□ -0.45
VTI1A-207ENST00000489357 ABCA6Q8N139 1617 aa12.24□□□□□ -0.45
VTI1A-207ENST00000489357 DNMT1P26358 1616 aaKnown RBP12.23□□□□□ -0.45
VTI1A-207ENST00000489357 MAST1Q9Y2H9 1570 aa12.22□□□□□ -0.45
VTI1A-207ENST00000489357 ATP7AQ04656 1500 aa12.22□□□□□ -0.45
VTI1A-207ENST00000489357 CCDC141Q6ZP82 1450 aa12.22□□□□□ -0.45
VTI1A-207ENST00000489357 SPAG9O60271 1321 aaKnown RBP12.22□□□□□ -0.45
VTI1A-207ENST00000489357 ADAMTSL3P82987 1691 aa12.22□□□□□ -0.45
VTI1A-207ENST00000489357 AGLP35573 1532 aa12.21□□□□□ -0.45
VTI1A-207ENST00000489357 PTPRKQ15262 1439 aa12.21□□□□□ -0.45
VTI1A-207ENST00000489357 C9orf84Q5VXU9 1444 aa12.21□□□□□ -0.45
VTI1A-207ENST00000489357 BCORL1Q5H9F3 1711 aa12.21□□□□□ -0.45
VTI1A-207ENST00000489357 NUBP1P53384 320 aa12.21□□□□□ -0.45
VTI1A-207ENST00000489357 ABCC5O15440 1437 aa12.2□□□□□ -0.46
VTI1A-207ENST00000489357 PLXNC1O60486 1568 aa12.19□□□□□ -0.46
VTI1A-207ENST00000489357 CROCC2H7BZ55 1655 aa12.19□□□□□ -0.46
VTI1A-207ENST00000489357 ADGBQ8N7X0 1667 aa12.19□□□□□ -0.46
VTI1A-207ENST00000489357 ARID4BQ4LE39 1312 aaPredicted RBP12.18□□□□□ -0.46
VTI1A-207ENST00000489357 DAPK1P53355 1430 aa12.18□□□□□ -0.46
VTI1A-207ENST00000489357 SHANK2Q9UPX8 1470 aa12.17□□□□□ -0.46
VTI1A-207ENST00000489357 MADDQ8WXG6 1647 aa12.16□□□□□ -0.46
VTI1A-207ENST00000489357 TSPY4P0CV99 314 aa12.16□□□□□ -0.46
VTI1A-207ENST00000489357 TSPY10P0CW01 314 aa12.16□□□□□ -0.46
VTI1A-207ENST00000489357 DHX29Q7Z478 1369 aaKnown RBP12.16□□□□□ -0.46
VTI1A-207ENST00000489357 ADGRL2O95490 1459 aa12.15□□□□□ -0.46
VTI1A-207ENST00000489357 A2MP01023 1474 aa12.15□□□□□ -0.46
VTI1A-207ENST00000489357 CIZ1Q9ULV3 898 aaPredicted RBP12.15□□□□□ -0.46
VTI1A-207ENST00000489357 GSE1Q14687 1217 aa12.13□□□□□ -0.47
VTI1A-207ENST00000489357 DCAF8Q5TAQ9 597 aa12.13□□□□□ -0.47
VTI1A-207ENST00000489357 RASEFQ8IZ41 740 aa12.13□□□□□ -0.47
VTI1A-207ENST00000489357 PTPRMP28827 1452 aa12.13□□□□□ -0.47
VTI1A-207ENST00000489357 NCOA1Q15788 1441 aa12.12□□□□□ -0.47
VTI1A-207ENST00000489357 CENPBP07199 599 aaPredicted RBP12.12□□□□□ -0.47
VTI1A-207ENST00000489357 PKD2Q13563 968 aa12.12□□□□□ -0.47
VTI1A-207ENST00000489357 FAM212AQ96EL1 285 aa12.12□□□□□ -0.47
VTI1A-207ENST00000489357 MYT1LQ9UL68 1186 aa12.12□□□□□ -0.47
VTI1A-207ENST00000489357 RIMS1Q86UR5 1692 aaKnown RBP12.11□□□□□ -0.47
VTI1A-207ENST00000489357 MLECQ14165 292 aa12.11□□□□□ -0.47
VTI1A-207ENST00000489357 SETD1BQ9UPS6 1966 aaKnown RBP12.1□□□□□ -0.47
VTI1A-207ENST00000489357 FER1L4A9Z1Z3 1794 aa12.1□□□□□ -0.47
VTI1A-207ENST00000489357 TONSLQ96HA7 1378 aa12.09□□□□□ -0.47
VTI1A-207ENST00000489357 DUOX2Q9NRD8 1548 aa12.09□□□□□ -0.47
VTI1A-207ENST00000489357 EIF2AK4Q9P2K8 1649 aaKnown RBP12.08□□□□□ -0.48
VTI1A-207ENST00000489357 PPP1R15AO75807 674 aaPredicted RBP12.08□□□□□ -0.48
VTI1A-207ENST00000489357 RNF17Q9BXT8 1623 aaKnown RBP12.08□□□□□ -0.48
VTI1A-207ENST00000489357 ANKRD30AQ9BXX3 1397 aa12.06□□□□□ -0.48
VTI1A-207ENST00000489357 KIF15Q9NS87 1388 aa12.06□□□□□ -0.48
VTI1A-207ENST00000489357 FAM135AQ9P2D6 1515 aa12.06□□□□□ -0.48
VTI1A-207ENST00000489357 ERBINQ96RT1 1412 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms