RNA–Protein interactions for RNA: ENST00000487633.1

COL4A3-206, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 3

Gene COL4A3, Length 524 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-206ENST00000487633 DEPDC5O75140 1603 aa10.05□□□□□ -0.8
COL4A3-206ENST00000487633 SYNMO15061 1565 aa10.05□□□□□ -0.8
COL4A3-206ENST00000487633 EHMT2Q96KQ7 1210 aa10.04□□□□□ -0.8
COL4A3-206ENST00000487633 ARHGAP35Q9NRY4 1499 aa10.04□□□□□ -0.8
COL4A3-206ENST00000487633 ROBO1Q9Y6N7 1651 aa10.03□□□□□ -0.8
COL4A3-206ENST00000487633 ZNF777Q9ULD5 760 aaPredicted RBP10.03□□□□□ -0.8
COL4A3-206ENST00000487633 TNRQ92752 1358 aa10.02□□□□□ -0.8
COL4A3-206ENST00000487633 ADGBQ8N7X0 1667 aa10.02□□□□□ -0.81
COL4A3-206ENST00000487633 SPAG9O60271 1321 aaKnown RBP10.02□□□□□ -0.81
COL4A3-206ENST00000487633 UGGT1Q9NYU2 1555 aa10.01□□□□□ -0.81
COL4A3-206ENST00000487633 ANKLE2Q86XL3 938 aa10.01□□□□□ -0.81
COL4A3-206ENST00000487633 RBM33Q96EV2 1170 aaKnown RBP10.01□□□□□ -0.81
COL4A3-206ENST00000487633 LRP6O75581 1613 aa10□□□□□ -0.81
COL4A3-206ENST00000487633 CFAP65Q6ZU64 1925 aaKnown RBP10□□□□□ -0.81
COL4A3-206ENST00000487633 TRIM52Q96A61 297 aa10□□□□□ -0.81
COL4A3-206ENST00000487633 CLIP1P30622 1438 aa9.99□□□□□ -0.81
COL4A3-206ENST00000487633 PZPP20742 1482 aa9.98□□□□□ -0.81
COL4A3-206ENST00000487633 GPATCH8Q9UKJ3 1502 aaKnown RBP9.98□□□□□ -0.81
COL4A3-206ENST00000487633 FAM135BQ49AJ0 1406 aa9.98□□□□□ -0.81
COL4A3-206ENST00000487633 CDK11AQ9UQ88 783 aaPredicted RBP9.97□□□□□ -0.81
COL4A3-206ENST00000487633 FMN1Q68DA7 1419 aa9.97□□□□□ -0.81
COL4A3-206ENST00000487633 MIA2Q96PC5 1412 aa9.97□□□□□ -0.81
COL4A3-206ENST00000487633 MAP3K1Q13233 1512 aa9.97□□□□□ -0.81
COL4A3-206ENST00000487633 PHLPP1O60346 1717 aa9.96□□□□□ -0.81
COL4A3-206ENST00000487633 ZNF644Q9H582 1327 aaPredicted RBP9.96□□□□□ -0.82
COL4A3-206ENST00000487633 UBR1Q8IWV7 1749 aa9.96□□□□□ -0.82
COL4A3-206ENST00000487633 LTKP29376 864 aa9.95□□□□□ -0.82
COL4A3-206ENST00000487633 COL16A1Q07092 1604 aaPredicted RBP9.94□□□□□ -0.82
COL4A3-206ENST00000487633 SETBP1Q9Y6X0 1596 aa9.94□□□□□ -0.82
COL4A3-206ENST00000487633 FAM135AQ9P2D6 1515 aa9.94□□□□□ -0.82
COL4A3-206ENST00000487633 THEMISQ8N1K5 641 aaPredicted RBP9.94□□□□□ -0.82
COL4A3-206ENST00000487633 KDM5DQ9BY66 1539 aa9.93□□□□□ -0.82
COL4A3-206ENST00000487633 NCOA2Q15596 1464 aa9.93□□□□□ -0.82
COL4A3-206ENST00000487633 NLRP1Q9C000 1473 aa9.92□□□□□ -0.82
COL4A3-206ENST00000487633 MBD5Q9P267 1494 aa9.91□□□□□ -0.82
COL4A3-206ENST00000487633 TMEM94Q12767 1356 aa9.91□□□□□ -0.82
COL4A3-206ENST00000487633 KIF3BO15066 747 aa9.91□□□□□ -0.82
COL4A3-206ENST00000487633 KIAA1107Q9UPP5 1409 aa9.9□□□□□ -0.82
COL4A3-206ENST00000487633 DHX29Q7Z478 1369 aaKnown RBP9.9□□□□□ -0.82
COL4A3-206ENST00000487633 CHIC1Q5VXU3 224 aa9.89□□□□□ -0.83
COL4A3-206ENST00000487633 CEP152O94986 1710 aa9.89□□□□□ -0.83
COL4A3-206ENST00000487633 SCAF11Q99590 1463 aaKnown RBP9.89□□□□□ -0.83
COL4A3-206ENST00000487633 ARHGAP23Q9P227 1491 aa9.88□□□□□ -0.83
COL4A3-206ENST00000487633 JCADQ9P266 1359 aa9.88□□□□□ -0.83
COL4A3-206ENST00000487633 WASHC2CQ9Y4E1 1318 aa9.87□□□□□ -0.83
COL4A3-206ENST00000487633 ERVK-7P63135 1459 aa9.87□□□□□ -0.83
COL4A3-206ENST00000487633 RGS12O14924 1447 aa9.87□□□□□ -0.83
COL4A3-206ENST00000487633 CASKIN1Q8WXD9 1431 aa9.87□□□□□ -0.83
COL4A3-206ENST00000487633 CFDP1Q9UEE9 299 aaPredicted RBP9.86□□□□□ -0.83
COL4A3-206ENST00000487633 ABCC3O15438 1527 aa9.86□□□□□ -0.83
COL4A3-206ENST00000487633 MROH1Q8NDA8 1641 aa9.85□□□□□ -0.83
COL4A3-206ENST00000487633 CCDC18Q5T9S5 1454 aa9.85□□□□□ -0.83
COL4A3-206ENST00000487633 TIAM1Q13009 1591 aa9.85□□□□□ -0.83
COL4A3-206ENST00000487633 UBTFP17480 764 aaKnown RBP9.85□□□□□ -0.83
COL4A3-206ENST00000487633 TXNDC2Q86VQ3 553 aa9.85□□□□□ -0.83
COL4A3-206ENST00000487633 SLIT1O75093 1534 aa9.85□□□□□ -0.83
COL4A3-206ENST00000487633 SHPRHQ149N8 1683 aa9.84□□□□□ -0.83
COL4A3-206ENST00000487633 RXRBP28702 533 aa9.84□□□□□ -0.83
COL4A3-206ENST00000487633 PIK3C2BO00750 1634 aa9.84□□□□□ -0.83
COL4A3-206ENST00000487633 DIP2AQ14689 1571 aa9.84□□□□□ -0.83
COL4A3-206ENST00000487633 TET3O43151 1660 aa9.83□□□□□ -0.84
COL4A3-206ENST00000487633 PLEKHH2Q8IVE3 1493 aa9.83□□□□□ -0.84
COL4A3-206ENST00000487633 RTEL1-TNFRSF6BF6WH68 1400 aa9.82□□□□□ -0.84
COL4A3-206ENST00000487633 EEA1Q15075 1411 aa9.82□□□□□ -0.84
COL4A3-206ENST00000487633 PRDM15P57071 1507 aaPredicted RBP9.82□□□□□ -0.84
COL4A3-206ENST00000487633 ZNF772Q68DY9 489 aaPredicted RBP9.82□□□□□ -0.84
COL4A3-206ENST00000487633 PROSER2Q86WR7 435 aaPredicted RBP9.82□□□□□ -0.84
COL4A3-206ENST00000487633 SLC26A8Q96RN1 970 aa9.82□□□□□ -0.84
COL4A3-206ENST00000487633 SLAIN2Q9P270 581 aa9.82□□□□□ -0.84
COL4A3-206ENST00000487633 NWD1Q149M9 1564 aa9.82□□□□□ -0.84
COL4A3-206ENST00000487633 KDM5AP29375 1690 aaKnown RBP9.81□□□□□ -0.84
COL4A3-206ENST00000487633 MAST1Q9Y2H9 1570 aa9.81□□□□□ -0.84
COL4A3-206ENST00000487633 CDK12Q9NYV4 1490 aaPredicted RBP9.81□□□□□ -0.84
COL4A3-206ENST00000487633 CCNB3Q8WWL7 1395 aa9.81□□□□□ -0.84
COL4A3-206ENST00000487633 EP400Q96L91 3159 aa9.81□□□□□ -0.84
COL4A3-206ENST00000487633 MEX3CQ5U5Q3 659 aaKnown RBP9.81□□□□□ -0.84
COL4A3-206ENST00000487633 NUTM2BA6NNL0 878 aaPredicted RBP9.8□□□□□ -0.84
COL4A3-206ENST00000487633 NUTM2EB1AL46 878 aaPredicted RBP9.8□□□□□ -0.84
COL4A3-206ENST00000487633 KCNA6P17658 529 aa9.8□□□□□ -0.84
COL4A3-206ENST00000487633 NUTM2AQ8IVF1 878 aaPredicted RBP9.8□□□□□ -0.84
COL4A3-206ENST00000487633 AFF2P51816 1311 aa9.8□□□□□ -0.84
COL4A3-206ENST00000487633 CHD2O14647 1828 aaKnown RBP9.79□□□□□ -0.84
COL4A3-206ENST00000487633 LRRC9Q6ZRR7 1453 aa9.79□□□□□ -0.84
COL4A3-206ENST00000487633 SPATA31A6Q5VVP1 1343 aa9.79□□□□□ -0.84
COL4A3-206ENST00000487633 AHDC1Q5TGY3 1603 aaPredicted RBP9.78□□□□□ -0.84
COL4A3-206ENST00000487633 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.78□□□□□ -0.84
COL4A3-206ENST00000487633 MYO5BQ9ULV0 1848 aa9.77□□□□□ -0.84
COL4A3-206ENST00000487633 FGD6Q6ZV73 1430 aa9.77□□□□□ -0.85
COL4A3-206ENST00000487633 NUTM2DQ5VT03 806 aaPredicted RBP9.77□□□□□ -0.85
COL4A3-206ENST00000487633 FYCO1Q9BQS8 1478 aa9.77□□□□□ -0.85
COL4A3-206ENST00000487633 TMEM2Q9UHN6 1383 aa9.76□□□□□ -0.85
COL4A3-206ENST00000487633 CCDC141Q6ZP82 1450 aa9.76□□□□□ -0.85
COL4A3-206ENST00000487633 MSH6P52701 1360 aa9.75□□□□□ -0.85
COL4A3-206ENST00000487633 CAMSAP2Q08AD1 1489 aa9.75□□□□□ -0.85
COL4A3-206ENST00000487633 NKTRP30414 1462 aaKnown RBP9.74□□□□□ -0.85
COL4A3-206ENST00000487633 DDX17Q92841 729 aaKnown RBP9.74□□□□□ -0.85
COL4A3-206ENST00000487633 QTRT2Q9H974 415 aaKnown RBP9.74□□□□□ -0.85
COL4A3-206ENST00000487633 ZRANB1Q9UGI0 708 aa9.73□□□□□ -0.85
COL4A3-206ENST00000487633 C8orf37Q96NL8 207 aa9.72□□□□□ -0.85
COL4A3-206ENST00000487633 EID1Q9Y6B2 187 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms