RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 KDM4FA0A1W2PPD8 638 aa10.15□□□□□ -0.78
PTPRE-209ENST00000487428 FAM50AQ14320 339 aaKnown RBP10.15□□□□□ -0.78
PTPRE-209ENST00000487428 LMTK2Q8IWU2 1503 aa10.15□□□□□ -0.78
PTPRE-209ENST00000487428 RIMS1Q86UR5 1692 aaKnown RBP10.15□□□□□ -0.79
PTPRE-209ENST00000487428 HFM1A2PYH4 1435 aa10.15□□□□□ -0.79
PTPRE-209ENST00000487428 C3P01024 1663 aa10.14□□□□□ -0.79
PTPRE-209ENST00000487428 ANKRD50Q9ULJ7 1429 aa10.14□□□□□ -0.79
PTPRE-209ENST00000487428 PTPRMP28827 1452 aa10.13□□□□□ -0.79
PTPRE-209ENST00000487428 MYT1LQ9UL68 1186 aa10.13□□□□□ -0.79
PTPRE-209ENST00000487428 CLTCQ00610 1675 aaKnown RBP10.12□□□□□ -0.79
PTPRE-209ENST00000487428 NPATQ14207 1427 aa10.12□□□□□ -0.79
PTPRE-209ENST00000487428 ARHGAP31Q2M1Z3 1444 aa10.12□□□□□ -0.79
PTPRE-209ENST00000487428 IQGAP3Q86VI3 1631 aa10.11□□□□□ -0.79
PTPRE-209ENST00000487428 NAIPQ13075 1403 aa10.11□□□□□ -0.79
PTPRE-209ENST00000487428 PPARGC1BQ86YN6 1023 aaKnown RBP10.11□□□□□ -0.79
PTPRE-209ENST00000487428 ABCC3O15438 1527 aa10.11□□□□□ -0.79
PTPRE-209ENST00000487428 CEP152O94986 1710 aa10.1□□□□□ -0.79
PTPRE-209ENST00000487428 ARID4BQ4LE39 1312 aaPredicted RBP10.1□□□□□ -0.79
PTPRE-209ENST00000487428 TET3O43151 1660 aa10.1□□□□□ -0.79
PTPRE-209ENST00000487428 CAMSAP1Q5T5Y3 1602 aa10.1□□□□□ -0.79
PTPRE-209ENST00000487428 RPRD2Q5VT52 1461 aaKnown RBP10.1□□□□□ -0.79
PTPRE-209ENST00000487428 KIF3BO15066 747 aa10.09□□□□□ -0.79
PTPRE-209ENST00000487428 RRP7BPQ9NSQ0 103 aa10.09□□□□□ -0.79
PTPRE-209ENST00000487428 PZPP20742 1482 aa10.09□□□□□ -0.79
PTPRE-209ENST00000487428 PREX1Q8TCU6 1659 aa10.09□□□□□ -0.79
PTPRE-209ENST00000487428 HRCP23327 699 aa10.08□□□□□ -0.8
PTPRE-209ENST00000487428 SPATA31D1Q6ZQQ2 1576 aa10.08□□□□□ -0.8
PTPRE-209ENST00000487428 ZNF142P52746 1687 aaPredicted RBP10.08□□□□□ -0.8
PTPRE-209ENST00000487428 KDM5AP29375 1690 aaKnown RBP10.07□□□□□ -0.8
PTPRE-209ENST00000487428 ZMYM3Q14202 1370 aa10.07□□□□□ -0.8
PTPRE-209ENST00000487428 KANK1Q14678 1352 aa10.07□□□□□ -0.8
PTPRE-209ENST00000487428 CHIC2Q9UKJ5 165 aa10.07□□□□□ -0.8
PTPRE-209ENST00000487428 EFCAB6Q5THR3 1501 aa10.07□□□□□ -0.8
PTPRE-209ENST00000487428 CFAP65Q6ZU64 1925 aaKnown RBP10.05□□□□□ -0.8
PTPRE-209ENST00000487428 GGT6Q6P531 493 aa10.04□□□□□ -0.8
PTPRE-209ENST00000487428 ESF1Q9H501 851 aaKnown RBP10.04□□□□□ -0.8
PTPRE-209ENST00000487428 WASHC2CQ9Y4E1 1318 aa10.04□□□□□ -0.8
PTPRE-209ENST00000487428 E9PCH4 1651 aa10.03□□□□□ -0.8
PTPRE-209ENST00000487428 NOS1P29475 1434 aa10.02□□□□□ -0.81
PTPRE-209ENST00000487428 SETD5Q9C0A6 1442 aa10.02□□□□□ -0.81
PTPRE-209ENST00000487428 MYO3AQ8NEV4 1616 aa10.02□□□□□ -0.81
PTPRE-209ENST00000487428 ERVK-7P63135 1459 aa10.02□□□□□ -0.81
PTPRE-209ENST00000487428 NLRP1Q9C000 1473 aa10.02□□□□□ -0.81
PTPRE-209ENST00000487428 PIK3C2BO00750 1634 aa10.01□□□□□ -0.81
PTPRE-209ENST00000487428 MLECQ14165 292 aa10.01□□□□□ -0.81
PTPRE-209ENST00000487428 LMTK3Q96Q04 1460 aa10□□□□□ -0.81
PTPRE-209ENST00000487428 SPHKAPQ2M3C7 1700 aa10□□□□□ -0.81
PTPRE-209ENST00000487428 ITGAEP38570 1179 aa9.99□□□□□ -0.81
PTPRE-209ENST00000487428 CEP170BQ9Y4F5 1589 aaPredicted RBP9.99□□□□□ -0.81
PTPRE-209ENST00000487428 NUP155O75694 1391 aa9.99□□□□□ -0.81
PTPRE-209ENST00000487428 PTPRTO14522 1441 aa9.99□□□□□ -0.81
PTPRE-209ENST00000487428 UHRF1BP1Q6BDS2 1440 aa9.99□□□□□ -0.81
PTPRE-209ENST00000487428 A2ML1A8K2U0 1454 aa9.98□□□□□ -0.81
PTPRE-209ENST00000487428 SYNMO15061 1565 aa9.98□□□□□ -0.81
PTPRE-209ENST00000487428 PLA2R1Q13018 1463 aa9.98□□□□□ -0.81
PTPRE-209ENST00000487428 NEURL4Q96JN8 1562 aa9.97□□□□□ -0.81
PTPRE-209ENST00000487428 UBR1Q8IWV7 1749 aa9.97□□□□□ -0.81
PTPRE-209ENST00000487428 TRIM26Q12899 539 aaPredicted RBP9.97□□□□□ -0.81
PTPRE-209ENST00000487428 TNRQ92752 1358 aa9.97□□□□□ -0.81
PTPRE-209ENST00000487428 AEBP2Q6ZN18 517 aaPredicted RBP9.96□□□□□ -0.82
PTPRE-209ENST00000487428 RAB3GAP2Q9H2M9 1393 aa9.96□□□□□ -0.82
PTPRE-209ENST00000487428 TRPM2O94759 1503 aa9.96□□□□□ -0.82
PTPRE-209ENST00000487428 CEBPAP49715 358 aaPredicted RBP9.95□□□□□ -0.82
PTPRE-209ENST00000487428 SLC52A1Q9NWF4 448 aa9.95□□□□□ -0.82
PTPRE-209ENST00000487428 KIF1BO60333 1816 aa9.94□□□□□ -0.82
PTPRE-209ENST00000487428 STRCQ7RTU9 1775 aa9.94□□□□□ -0.82
PTPRE-209ENST00000487428 POLR1AO95602 1720 aaPredicted RBP9.94□□□□□ -0.82
PTPRE-209ENST00000487428 TMEM131LA2VDJ0 1609 aa9.93□□□□□ -0.82
PTPRE-209ENST00000487428 SLIT1O75093 1534 aa9.93□□□□□ -0.82
PTPRE-209ENST00000487428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.93□□□□□ -0.82
PTPRE-209ENST00000487428 MYO5BQ9ULV0 1848 aa9.93□□□□□ -0.82
PTPRE-209ENST00000487428 UGGT1Q9NYU2 1555 aa9.92□□□□□ -0.82
PTPRE-209ENST00000487428 ADGRB3O60242 1522 aa9.92□□□□□ -0.82
PTPRE-209ENST00000487428 ARHGAP23Q9P227 1491 aa9.92□□□□□ -0.82
PTPRE-209ENST00000487428 FBXO31Q5XUX0 539 aaPredicted RBP9.91□□□□□ -0.82
PTPRE-209ENST00000487428 MED14O60244 1454 aa9.91□□□□□ -0.82
PTPRE-209ENST00000487428 MPHOSPH9Q99550 1183 aa9.9□□□□□ -0.82
PTPRE-209ENST00000487428 CLTCL1P53675 1640 aa9.89□□□□□ -0.83
PTPRE-209ENST00000487428 THEMISQ8N1K5 641 aaPredicted RBP9.89□□□□□ -0.83
PTPRE-209ENST00000487428 SLC4A1APQ9BWU0 796 aaKnown RBP9.89□□□□□ -0.83
PTPRE-209ENST00000487428 PKD2Q13563 968 aa9.88□□□□□ -0.83
PTPRE-209ENST00000487428 IDI1Q13907 227 aa9.87□□□□□ -0.83
PTPRE-209ENST00000487428 TRIM52Q96A61 297 aa9.87□□□□□ -0.83
PTPRE-209ENST00000487428 IFT172Q9UG01 1749 aa9.87□□□□□ -0.83
PTPRE-209ENST00000487428 ZFYVE9O95405 1425 aa9.86□□□□□ -0.83
PTPRE-209ENST00000487428 ANKRD30BQ9BXX2 1392 aa9.86□□□□□ -0.83
PTPRE-209ENST00000487428 TMEM2Q9UHN6 1383 aa9.86□□□□□ -0.83
PTPRE-209ENST00000487428 PPLO60437 1756 aa9.86□□□□□ -0.83
PTPRE-209ENST00000487428 DMRT2Q9Y5R5 561 aa9.85□□□□□ -0.83
PTPRE-209ENST00000487428 IQGAP1P46940 1657 aa9.85□□□□□ -0.83
PTPRE-209ENST00000487428 CCDC144AA2RUR9 1427 aa9.84□□□□□ -0.83
PTPRE-209ENST00000487428 SPATA31E1Q6ZUB1 1445 aa9.84□□□□□ -0.83
PTPRE-209ENST00000487428 SCAF11Q99590 1463 aaKnown RBP9.84□□□□□ -0.83
PTPRE-209ENST00000487428 STAC3Q96MF2 364 aa9.83□□□□□ -0.84
PTPRE-209ENST00000487428 DIP2AQ14689 1571 aa9.83□□□□□ -0.84
PTPRE-209ENST00000487428 RPGRIP1LQ68CZ1 1315 aa9.82□□□□□ -0.84
PTPRE-209ENST00000487428 NEXMIFQ5QGS0 1516 aa9.82□□□□□ -0.84
PTPRE-209ENST00000487428 HDGFP51858 240 aaKnown RBP9.82□□□□□ -0.84
PTPRE-209ENST00000487428 ANKLE2Q86XL3 938 aa9.82□□□□□ -0.84
PTPRE-209ENST00000487428 SETBP1Q9Y6X0 1596 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms