RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 GGT6Q6P531 493 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 TNRQ92752 1358 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 ATP1B4Q9UN42 357 aaPredicted RBP19.79■□□□□ 0.76
TRIM56-204ENST00000487252 SYCP2Q9BX26 1530 aa19.79■□□□□ 0.76
TRIM56-204ENST00000487252 THEMISQ8N1K5 641 aaPredicted RBP19.78■□□□□ 0.76
TRIM56-204ENST00000487252 UPF1Q92900 1129 aaKnown RBP eCLIP19.78■□□□□ 0.761e-10■■■■■ 38
TRIM56-204ENST00000487252 FAM135BQ49AJ0 1406 aa19.77■□□□□ 0.76
TRIM56-204ENST00000487252 PZPP20742 1482 aa19.76■□□□□ 0.75
TRIM56-204ENST00000487252 FBXO31Q5XUX0 539 aaPredicted RBP19.76■□□□□ 0.75
TRIM56-204ENST00000487252 XIRP1Q702N8 1843 aaKnown RBP19.75■□□□□ 0.75
TRIM56-204ENST00000487252 ADGBQ8N7X0 1667 aa19.75■□□□□ 0.75
TRIM56-204ENST00000487252 UGGT1Q9NYU2 1555 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 NLRP1Q9C000 1473 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 EEA1Q15075 1411 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 KIAA1107Q9UPP5 1409 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 ARHGAP35Q9NRY4 1499 aa19.73■□□□□ 0.75
TRIM56-204ENST00000487252 ZC3H13Q5T200 1668 aaKnown RBP19.72■□□□□ 0.75
TRIM56-204ENST00000487252 FAM135AQ9P2D6 1515 aa19.71■□□□□ 0.75
TRIM56-204ENST00000487252 HNRNPMP52272 730 aaKnown RBP eCLIP19.71■□□□□ 0.75
TRIM56-204ENST00000487252 MIA2Q96PC5 1412 aa19.7■□□□□ 0.74
TRIM56-204ENST00000487252 GPATCH8Q9UKJ3 1502 aaKnown RBP19.67■□□□□ 0.74
TRIM56-204ENST00000487252 PLEKHH2Q8IVE3 1493 aa19.66■□□□□ 0.74
TRIM56-204ENST00000487252 KDM5DQ9BY66 1539 aa19.66■□□□□ 0.74
TRIM56-204ENST00000487252 ZNF777Q9ULD5 760 aaPredicted RBP19.65■□□□□ 0.74
TRIM56-204ENST00000487252 ROBO1Q9Y6N7 1651 aa19.63■□□□□ 0.73
TRIM56-204ENST00000487252 CCDC18Q5T9S5 1454 aa19.63■□□□□ 0.73
TRIM56-204ENST00000487252 DHX29Q7Z478 1369 aaKnown RBP19.61■□□□□ 0.73
TRIM56-204ENST00000487252 RTEL1-TNFRSF6BF6WH68 1400 aa19.59■□□□□ 0.73
TRIM56-204ENST00000487252 CASKIN1Q8WXD9 1431 aa19.56■□□□□ 0.72
TRIM56-204ENST00000487252 SCAF11Q99590 1463 aaKnown RBP19.54■□□□□ 0.72
TRIM56-204ENST00000487252 MBD5Q9P267 1494 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 WASHC2CQ9Y4E1 1318 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 JCADQ9P266 1359 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 KIF3BO15066 747 aa19.53■□□□□ 0.72
TRIM56-204ENST00000487252 UBR1Q8IWV7 1749 aa19.53■□□□□ 0.72
TRIM56-204ENST00000487252 MAP3K1Q13233 1512 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 CFDP1Q9UEE9 299 aaPredicted RBP19.52■□□□□ 0.72
TRIM56-204ENST00000487252 LRRC9Q6ZRR7 1453 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 CDK12Q9NYV4 1490 aaPredicted RBP19.52■□□□□ 0.72
TRIM56-204ENST00000487252 ARHGAP23Q9P227 1491 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 LRP6O75581 1613 aa19.51■□□□□ 0.71
TRIM56-204ENST00000487252 SLIT1O75093 1534 aa19.51■□□□□ 0.71
TRIM56-204ENST00000487252 TMEM94Q12767 1356 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 ZNF772Q68DY9 489 aaPredicted RBP19.5■□□□□ 0.71
TRIM56-204ENST00000487252 TRIM52Q96A61 297 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 PHLPP1O60346 1717 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 NCOA2Q15596 1464 aa19.49■□□□□ 0.71
TRIM56-204ENST00000487252 LTKP29376 864 aa19.49■□□□□ 0.71
TRIM56-204ENST00000487252 COL16A1Q07092 1604 aaPredicted RBP19.47■□□□□ 0.71
TRIM56-204ENST00000487252 ERVK-7P63135 1459 aa19.46■□□□□ 0.71
TRIM56-204ENST00000487252 SPATA31A6Q5VVP1 1343 aa19.45■□□□□ 0.7
TRIM56-204ENST00000487252 ZNF644Q9H582 1327 aaPredicted RBP19.44■□□□□ 0.7
TRIM56-204ENST00000487252 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
TRIM56-204ENST00000487252 FGD6Q6ZV73 1430 aa19.43■□□□□ 0.7
TRIM56-204ENST00000487252 UBTFP17480 764 aaKnown RBP19.43■□□□□ 0.7
TRIM56-204ENST00000487252 RXRBP28702 533 aa19.43■□□□□ 0.7
TRIM56-204ENST00000487252 ABCC3O15438 1527 aa19.42■□□□□ 0.7
TRIM56-204ENST00000487252 TXNDC2Q86VQ3 553 aa19.42■□□□□ 0.7
TRIM56-204ENST00000487252 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
TRIM56-204ENST00000487252 PRDM15P57071 1507 aaPredicted RBP19.41■□□□□ 0.7
TRIM56-204ENST00000487252 KCNA6P17658 529 aa19.4■□□□□ 0.7
TRIM56-204ENST00000487252 TIAM1Q13009 1591 aa19.4■□□□□ 0.7
TRIM56-204ENST00000487252 CAMSAP2Q08AD1 1489 aa19.38■□□□□ 0.69
TRIM56-204ENST00000487252 SLAIN2Q9P270 581 aa19.38■□□□□ 0.69
TRIM56-204ENST00000487252 SHPRHQ149N8 1683 aa19.37■□□□□ 0.69
TRIM56-204ENST00000487252 NWD1Q149M9 1564 aa19.36■□□□□ 0.69
TRIM56-204ENST00000487252 NKTRP30414 1462 aaKnown RBP19.36■□□□□ 0.69
TRIM56-204ENST00000487252 TET3O43151 1660 aa19.36■□□□□ 0.69
TRIM56-204ENST00000487252 PROSER2Q86WR7 435 aaPredicted RBP19.35■□□□□ 0.69
TRIM56-204ENST00000487252 MEX3CQ5U5Q3 659 aaKnown RBP19.34■□□□□ 0.69
TRIM56-204ENST00000487252 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
TRIM56-204ENST00000487252 RBM33Q96EV2 1170 aaKnown RBP19.33■□□□□ 0.68
TRIM56-204ENST00000487252 EID1Q9Y6B2 187 aa19.33■□□□□ 0.68
TRIM56-204ENST00000487252 MSH6P52701 1360 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 TMEM2Q9UHN6 1383 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 RGS12O14924 1447 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 AHDC1Q5TGY3 1603 aaPredicted RBP19.31■□□□□ 0.68
TRIM56-204ENST00000487252 MROH1Q8NDA8 1641 aa19.31■□□□□ 0.68
TRIM56-204ENST00000487252 CFAP65Q6ZU64 1925 aaKnown RBP19.3■□□□□ 0.68
TRIM56-204ENST00000487252 SETBP1Q9Y6X0 1596 aa19.3■□□□□ 0.68
TRIM56-204ENST00000487252 KDM5AP29375 1690 aaKnown RBP19.28■□□□□ 0.68
TRIM56-204ENST00000487252 RSPH4AQ5TD94 716 aa19.28■□□□□ 0.68
TRIM56-204ENST00000487252 EHMT2Q96KQ7 1210 aa19.28■□□□□ 0.68
TRIM56-204ENST00000487252 DIP2AQ14689 1571 aa19.27■□□□□ 0.67
TRIM56-204ENST00000487252 PIK3C2BO00750 1634 aa19.26■□□□□ 0.67
TRIM56-204ENST00000487252 EIF2AK4Q9P2K8 1649 aaKnown RBP19.26■□□□□ 0.67
TRIM56-204ENST00000487252 ZRANB1Q9UGI0 708 aa19.26■□□□□ 0.67
TRIM56-204ENST00000487252 ARHGAP31Q2M1Z3 1444 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 CEP152O94986 1710 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 AFF2P51816 1311 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 SLC26A8Q96RN1 970 aa19.23■□□□□ 0.67
TRIM56-204ENST00000487252 MTUS2Q5JR59 1369 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 RBM6P78332 1123 aaKnown RBP19.22■□□□□ 0.67
TRIM56-204ENST00000487252 FOXD1Q16676 465 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 ARHGEF5Q12774 1597 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 EP400Q96L91 3159 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 NCOA3Q9Y6Q9 1424 aa19.21■□□□□ 0.67
TRIM56-204ENST00000487252 EFCAB6Q5THR3 1501 aa19.2■□□□□ 0.66
TRIM56-204ENST00000487252 ATAD2Q6PL18 1390 aa19.19■□□□□ 0.66
TRIM56-204ENST00000487252 CEP162Q5TB80 1403 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms