RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 GGT6Q6P531 493 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 TNRQ92752 1358 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 ATP1B4Q9UN42 357 aaPredicted RBP19.79■□□□□ 0.76
TRIM56-204ENST00000487252 SYCP2Q9BX26 1530 aa19.79■□□□□ 0.76
TRIM56-204ENST00000487252 THEMISQ8N1K5 641 aaPredicted RBP19.78■□□□□ 0.76
TRIM56-204ENST00000487252 UPF1Q92900 1129 aaKnown RBP eCLIP19.78■□□□□ 0.761e-10■■■■■ 38
TRIM56-204ENST00000487252 FAM135BQ49AJ0 1406 aa19.77■□□□□ 0.76
TRIM56-204ENST00000487252 PZPP20742 1482 aa19.76■□□□□ 0.75
TRIM56-204ENST00000487252 FBXO31Q5XUX0 539 aaPredicted RBP19.76■□□□□ 0.75
TRIM56-204ENST00000487252 XIRP1Q702N8 1843 aaKnown RBP19.75■□□□□ 0.75
TRIM56-204ENST00000487252 ADGBQ8N7X0 1667 aa19.75■□□□□ 0.75
TRIM56-204ENST00000487252 UGGT1Q9NYU2 1555 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 NLRP1Q9C000 1473 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 EEA1Q15075 1411 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 KIAA1107Q9UPP5 1409 aa19.74■□□□□ 0.75
TRIM56-204ENST00000487252 ARHGAP35Q9NRY4 1499 aa19.73■□□□□ 0.75
TRIM56-204ENST00000487252 ZC3H13Q5T200 1668 aaKnown RBP19.72■□□□□ 0.75
TRIM56-204ENST00000487252 FAM135AQ9P2D6 1515 aa19.71■□□□□ 0.75
TRIM56-204ENST00000487252 HNRNPMP52272 730 aaKnown RBP eCLIP19.71■□□□□ 0.75
TRIM56-204ENST00000487252 MIA2Q96PC5 1412 aa19.7■□□□□ 0.74
TRIM56-204ENST00000487252 GPATCH8Q9UKJ3 1502 aaKnown RBP19.67■□□□□ 0.74
TRIM56-204ENST00000487252 PLEKHH2Q8IVE3 1493 aa19.66■□□□□ 0.74
TRIM56-204ENST00000487252 KDM5DQ9BY66 1539 aa19.66■□□□□ 0.74
TRIM56-204ENST00000487252 ZNF777Q9ULD5 760 aaPredicted RBP19.65■□□□□ 0.74
TRIM56-204ENST00000487252 ROBO1Q9Y6N7 1651 aa19.63■□□□□ 0.73
TRIM56-204ENST00000487252 CCDC18Q5T9S5 1454 aa19.63■□□□□ 0.73
TRIM56-204ENST00000487252 DHX29Q7Z478 1369 aaKnown RBP19.61■□□□□ 0.73
TRIM56-204ENST00000487252 RTEL1-TNFRSF6BF6WH68 1400 aa19.59■□□□□ 0.73
TRIM56-204ENST00000487252 CASKIN1Q8WXD9 1431 aa19.56■□□□□ 0.72
TRIM56-204ENST00000487252 SCAF11Q99590 1463 aaKnown RBP19.54■□□□□ 0.72
TRIM56-204ENST00000487252 MBD5Q9P267 1494 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 WASHC2CQ9Y4E1 1318 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 JCADQ9P266 1359 aa19.54■□□□□ 0.72
TRIM56-204ENST00000487252 KIF3BO15066 747 aa19.53■□□□□ 0.72
TRIM56-204ENST00000487252 UBR1Q8IWV7 1749 aa19.53■□□□□ 0.72
TRIM56-204ENST00000487252 MAP3K1Q13233 1512 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 CFDP1Q9UEE9 299 aaPredicted RBP19.52■□□□□ 0.72
TRIM56-204ENST00000487252 LRRC9Q6ZRR7 1453 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 CDK12Q9NYV4 1490 aaPredicted RBP19.52■□□□□ 0.72
TRIM56-204ENST00000487252 ARHGAP23Q9P227 1491 aa19.52■□□□□ 0.72
TRIM56-204ENST00000487252 LRP6O75581 1613 aa19.51■□□□□ 0.71
TRIM56-204ENST00000487252 SLIT1O75093 1534 aa19.51■□□□□ 0.71
TRIM56-204ENST00000487252 TMEM94Q12767 1356 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 ZNF772Q68DY9 489 aaPredicted RBP19.5■□□□□ 0.71
TRIM56-204ENST00000487252 TRIM52Q96A61 297 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 PHLPP1O60346 1717 aa19.5■□□□□ 0.71
TRIM56-204ENST00000487252 NCOA2Q15596 1464 aa19.49■□□□□ 0.71
TRIM56-204ENST00000487252 LTKP29376 864 aa19.49■□□□□ 0.71
TRIM56-204ENST00000487252 COL16A1Q07092 1604 aaPredicted RBP19.47■□□□□ 0.71
TRIM56-204ENST00000487252 ERVK-7P63135 1459 aa19.46■□□□□ 0.71
TRIM56-204ENST00000487252 SPATA31A6Q5VVP1 1343 aa19.45■□□□□ 0.7
TRIM56-204ENST00000487252 ZNF644Q9H582 1327 aaPredicted RBP19.44■□□□□ 0.7
TRIM56-204ENST00000487252 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
TRIM56-204ENST00000487252 FGD6Q6ZV73 1430 aa19.43■□□□□ 0.7
TRIM56-204ENST00000487252 UBTFP17480 764 aaKnown RBP19.43■□□□□ 0.7
TRIM56-204ENST00000487252 RXRBP28702 533 aa19.43■□□□□ 0.7
TRIM56-204ENST00000487252 ABCC3O15438 1527 aa19.42■□□□□ 0.7
TRIM56-204ENST00000487252 TXNDC2Q86VQ3 553 aa19.42■□□□□ 0.7
TRIM56-204ENST00000487252 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
TRIM56-204ENST00000487252 PRDM15P57071 1507 aaPredicted RBP19.41■□□□□ 0.7
TRIM56-204ENST00000487252 KCNA6P17658 529 aa19.4■□□□□ 0.7
TRIM56-204ENST00000487252 TIAM1Q13009 1591 aa19.4■□□□□ 0.7
TRIM56-204ENST00000487252 CAMSAP2Q08AD1 1489 aa19.38■□□□□ 0.69
TRIM56-204ENST00000487252 SLAIN2Q9P270 581 aa19.38■□□□□ 0.69
TRIM56-204ENST00000487252 SHPRHQ149N8 1683 aa19.37■□□□□ 0.69
TRIM56-204ENST00000487252 NWD1Q149M9 1564 aa19.36■□□□□ 0.69
TRIM56-204ENST00000487252 NKTRP30414 1462 aaKnown RBP19.36■□□□□ 0.69
TRIM56-204ENST00000487252 TET3O43151 1660 aa19.36■□□□□ 0.69
TRIM56-204ENST00000487252 PROSER2Q86WR7 435 aaPredicted RBP19.35■□□□□ 0.69
TRIM56-204ENST00000487252 MEX3CQ5U5Q3 659 aaKnown RBP19.34■□□□□ 0.69
TRIM56-204ENST00000487252 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
TRIM56-204ENST00000487252 RBM33Q96EV2 1170 aaKnown RBP19.33■□□□□ 0.68
TRIM56-204ENST00000487252 EID1Q9Y6B2 187 aa19.33■□□□□ 0.68
TRIM56-204ENST00000487252 MSH6P52701 1360 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 TMEM2Q9UHN6 1383 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 RGS12O14924 1447 aa19.32■□□□□ 0.68
TRIM56-204ENST00000487252 AHDC1Q5TGY3 1603 aaPredicted RBP19.31■□□□□ 0.68
TRIM56-204ENST00000487252 MROH1Q8NDA8 1641 aa19.31■□□□□ 0.68
TRIM56-204ENST00000487252 CFAP65Q6ZU64 1925 aaKnown RBP19.3■□□□□ 0.68
TRIM56-204ENST00000487252 SETBP1Q9Y6X0 1596 aa19.3■□□□□ 0.68
TRIM56-204ENST00000487252 KDM5AP29375 1690 aaKnown RBP19.28■□□□□ 0.68
TRIM56-204ENST00000487252 RSPH4AQ5TD94 716 aa19.28■□□□□ 0.68
TRIM56-204ENST00000487252 EHMT2Q96KQ7 1210 aa19.28■□□□□ 0.68
TRIM56-204ENST00000487252 DIP2AQ14689 1571 aa19.27■□□□□ 0.67
TRIM56-204ENST00000487252 PIK3C2BO00750 1634 aa19.26■□□□□ 0.67
TRIM56-204ENST00000487252 EIF2AK4Q9P2K8 1649 aaKnown RBP19.26■□□□□ 0.67
TRIM56-204ENST00000487252 ZRANB1Q9UGI0 708 aa19.26■□□□□ 0.67
TRIM56-204ENST00000487252 ARHGAP31Q2M1Z3 1444 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 CEP152O94986 1710 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 AFF2P51816 1311 aa19.25■□□□□ 0.67
TRIM56-204ENST00000487252 SLC26A8Q96RN1 970 aa19.23■□□□□ 0.67
TRIM56-204ENST00000487252 MTUS2Q5JR59 1369 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 RBM6P78332 1123 aaKnown RBP19.22■□□□□ 0.67
TRIM56-204ENST00000487252 FOXD1Q16676 465 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 ARHGEF5Q12774 1597 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 EP400Q96L91 3159 aa19.22■□□□□ 0.67
TRIM56-204ENST00000487252 NCOA3Q9Y6Q9 1424 aa19.21■□□□□ 0.67
TRIM56-204ENST00000487252 EFCAB6Q5THR3 1501 aa19.2■□□□□ 0.66
TRIM56-204ENST00000487252 ATAD2Q6PL18 1390 aa19.19■□□□□ 0.66
TRIM56-204ENST00000487252 CEP162Q5TB80 1403 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms