RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 AGLP35573 1532 aa26.35■■□□□ 1.81
SMARCD3-212ENST00000485610 KDM5DQ9BY66 1539 aa26.34■■□□□ 1.81
SMARCD3-212ENST00000485610 MROH1Q8NDA8 1641 aa26.32■■□□□ 1.8
SMARCD3-212ENST00000485610 PRDM15P57071 1507 aaPredicted RBP26.32■■□□□ 1.8
SMARCD3-212ENST00000485610 IQGAP3Q86VI3 1631 aa26.31■■□□□ 1.8
SMARCD3-212ENST00000485610 KIF3BO15066 747 aa26.28■■□□□ 1.8
SMARCD3-212ENST00000485610 TRIM52Q96A61 297 aa26.26■■□□□ 1.79
SMARCD3-212ENST00000485610 VWDEQ8N2E2 1590 aa26.25■■□□□ 1.79
SMARCD3-212ENST00000485610 FAM135AQ9P2D6 1515 aa26.24■■□□□ 1.79
SMARCD3-212ENST00000485610 NUP155O75694 1391 aa26.23■■□□□ 1.79
SMARCD3-212ENST00000485610 PZPP20742 1482 aa26.23■■□□□ 1.79
SMARCD3-212ENST00000485610 CEP152O94986 1710 aa26.23■■□□□ 1.79
SMARCD3-212ENST00000485610 ZC3H13Q5T200 1668 aaKnown RBP26.23■■□□□ 1.79
SMARCD3-212ENST00000485610 DHX57Q6P158 1386 aaKnown RBP26.22■■□□□ 1.79
SMARCD3-212ENST00000485610 KANK1Q14678 1352 aa26.2■■□□□ 1.79
SMARCD3-212ENST00000485610 TET3O43151 1660 aa26.2■■□□□ 1.78
SMARCD3-212ENST00000485610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.17■■□□□ 1.78
SMARCD3-212ENST00000485610 ABCC3O15438 1527 aa26.15■■□□□ 1.78
SMARCD3-212ENST00000485610 LMTK2Q8IWU2 1503 aa26.15■■□□□ 1.78
SMARCD3-212ENST00000485610 GGT6Q6P531 493 aa26.14■■□□□ 1.78
SMARCD3-212ENST00000485610 CAMSAP1Q5T5Y3 1602 aa26.13■■□□□ 1.77
SMARCD3-212ENST00000485610 MPHOSPH9Q99550 1183 aa26.13■■□□□ 1.77
SMARCD3-212ENST00000485610 SLC4A1APQ9BWU0 796 aaKnown RBP26.12■■□□□ 1.77
SMARCD3-212ENST00000485610 EFCAB6Q5THR3 1501 aa26.12■■□□□ 1.77
SMARCD3-212ENST00000485610 ARID4BQ4LE39 1312 aaPredicted RBP26.12■■□□□ 1.77
SMARCD3-212ENST00000485610 E9PCH4 1651 aa26.12■■□□□ 1.77
SMARCD3-212ENST00000485610 CLTCQ00610 1675 aaKnown RBP26.11■■□□□ 1.77
SMARCD3-212ENST00000485610 FER1L4A9Z1Z3 1794 aa26.09■■□□□ 1.77
SMARCD3-212ENST00000485610 CCER1Q8TC90 406 aaPredicted RBP26.09■■□□□ 1.77
SMARCD3-212ENST00000485610 PPP6R1Q9UPN7 881 aa26.07■■□□□ 1.76
SMARCD3-212ENST00000485610 MROH2AA6NES4 1674 aa26.05■■□□□ 1.76
SMARCD3-212ENST00000485610 WASHC2CQ9Y4E1 1318 aa26.04■■□□□ 1.76
SMARCD3-212ENST00000485610 PKD2Q13563 968 aa26.04■■□□□ 1.76
SMARCD3-212ENST00000485610 MLECQ14165 292 aa26.04■■□□□ 1.76
SMARCD3-212ENST00000485610 SPHKAPQ2M3C7 1700 aa26.04■■□□□ 1.76
SMARCD3-212ENST00000485610 CLSPNQ9HAW4 1339 aa26.03■■□□□ 1.76
SMARCD3-212ENST00000485610 CFAP65Q6ZU64 1925 aaKnown RBP26.02■■□□□ 1.76
SMARCD3-212ENST00000485610 RPRD2Q5VT52 1461 aaKnown RBP26.01■■□□□ 1.75
SMARCD3-212ENST00000485610 CNTLNQ9NXG0 1405 aa26■■□□□ 1.75
SMARCD3-212ENST00000485610 ADAMTSL3P82987 1691 aa26■■□□□ 1.75
SMARCD3-212ENST00000485610 ARHGAP31Q2M1Z3 1444 aa25.99■■□□□ 1.75
SMARCD3-212ENST00000485610 MADDQ8WXG6 1647 aa25.97■■□□□ 1.75
SMARCD3-212ENST00000485610 NPATQ14207 1427 aa25.96■■□□□ 1.75
SMARCD3-212ENST00000485610 FOXD1Q16676 465 aa25.96■■□□□ 1.75
SMARCD3-212ENST00000485610 PREX1Q8TCU6 1659 aa25.96■■□□□ 1.75
SMARCD3-212ENST00000485610 ESF1Q9H501 851 aaKnown RBP25.95■■□□□ 1.74
SMARCD3-212ENST00000485610 ANKRD30BQ9BXX2 1392 aa25.95■■□□□ 1.74
SMARCD3-212ENST00000485610 RIMS1Q86UR5 1692 aaKnown RBP25.94■■□□□ 1.74
SMARCD3-212ENST00000485610 TRPM2O94759 1503 aa25.94■■□□□ 1.74
SMARCD3-212ENST00000485610 C3P01024 1663 aa25.91■■□□□ 1.74
SMARCD3-212ENST00000485610 PTPRTO14522 1441 aa25.9■■□□□ 1.74
SMARCD3-212ENST00000485610 PLA2R1Q13018 1463 aa25.89■■□□□ 1.74
SMARCD3-212ENST00000485610 SPATA31D1Q6ZQQ2 1576 aa25.86■■□□□ 1.73
SMARCD3-212ENST00000485610 ERVK-7P63135 1459 aa25.86■■□□□ 1.73
SMARCD3-212ENST00000485610 SYNMO15061 1565 aa25.86■■□□□ 1.73
SMARCD3-212ENST00000485610 NOS1P29475 1434 aa25.86■■□□□ 1.73
SMARCD3-212ENST00000485610 CLTCL1P53675 1640 aa25.85■■□□□ 1.73
SMARCD3-212ENST00000485610 ZMYM3Q14202 1370 aa25.85■■□□□ 1.73
SMARCD3-212ENST00000485610 CCDC144AA2RUR9 1427 aa25.84■■□□□ 1.73
SMARCD3-212ENST00000485610 PIK3C2BO00750 1634 aa25.83■■□□□ 1.73
SMARCD3-212ENST00000485610 KIF1BO60333 1816 aa25.82■■□□□ 1.72
SMARCD3-212ENST00000485610 UGGT1Q9NYU2 1555 aa25.79■■□□□ 1.72
SMARCD3-212ENST00000485610 SIN3AQ96ST3 1273 aa25.79■■□□□ 1.72
SMARCD3-212ENST00000485610 NEUROD1Q13562 356 aa25.74■■□□□ 1.71
SMARCD3-212ENST00000485610 FBXO31Q5XUX0 539 aaPredicted RBP25.73■■□□□ 1.71
SMARCD3-212ENST00000485610 NEURL4Q96JN8 1562 aa25.73■■□□□ 1.71
SMARCD3-212ENST00000485610 MYO5BQ9ULV0 1848 aa25.71■■□□□ 1.71
SMARCD3-212ENST00000485610 TNRQ92752 1358 aa25.71■■□□□ 1.71
SMARCD3-212ENST00000485610 PTPRMP28827 1452 aa25.7■■□□□ 1.71
SMARCD3-212ENST00000485610 ZEB1P37275 1124 aaPredicted RBP25.7■■□□□ 1.7
SMARCD3-212ENST00000485610 ADGRB3O60242 1522 aa25.69■■□□□ 1.7
SMARCD3-212ENST00000485610 TONSLQ96HA7 1378 aa25.69■■□□□ 1.7
SMARCD3-212ENST00000485610 SETD1BQ9UPS6 1966 aaKnown RBP25.69■■□□□ 1.7
SMARCD3-212ENST00000485610 MYO3AQ8NEV4 1616 aa25.68■■□□□ 1.7
SMARCD3-212ENST00000485610 CEBPAP49715 358 aaPredicted RBP25.68■■□□□ 1.7
SMARCD3-212ENST00000485610 SLC52A1Q9NWF4 448 aa25.68■■□□□ 1.7
SMARCD3-212ENST00000485610 KDM5AP29375 1690 aaKnown RBP25.67■■□□□ 1.7
SMARCD3-212ENST00000485610 SPATA31E1Q6ZUB1 1445 aa25.66■■□□□ 1.7
SMARCD3-212ENST00000485610 TMEM131LA2VDJ0 1609 aa25.66■■□□□ 1.7
SMARCD3-212ENST00000485610 TIMELESSQ9UNS1 1208 aa25.65■■□□□ 1.7
SMARCD3-212ENST00000485610 NLRP1Q9C000 1473 aa25.64■■□□□ 1.7
SMARCD3-212ENST00000485610 IFT172Q9UG01 1749 aa25.63■■□□□ 1.69
SMARCD3-212ENST00000485610 UBR1Q8IWV7 1749 aa25.62■■□□□ 1.69
SMARCD3-212ENST00000485610 ZNF142P52746 1687 aaPredicted RBP25.62■■□□□ 1.69
SMARCD3-212ENST00000485610 IDI1Q13907 227 aa25.61■■□□□ 1.69
SMARCD3-212ENST00000485610 PLPPR3Q6T4P5 718 aa25.61■■□□□ 1.69
SMARCD3-212ENST00000485610 PPLO60437 1756 aa25.59■■□□□ 1.69
SMARCD3-212ENST00000485610 KDM4FA0A1W2PPD8 638 aa25.58■■□□□ 1.69
SMARCD3-212ENST00000485610 CEP170BQ9Y4F5 1589 aaPredicted RBP25.56■■□□□ 1.68
SMARCD3-212ENST00000485610 L3MBTL2Q969R5 705 aa25.55■■□□□ 1.68
SMARCD3-212ENST00000485610 CHGAP10645 457 aaKnown RBP25.54■■□□□ 1.68
SMARCD3-212ENST00000485610 A2ML1A8K2U0 1454 aa25.54■■□□□ 1.68
SMARCD3-212ENST00000485610 RGL3Q3MIN7 710 aa25.53■■□□□ 1.68
SMARCD3-212ENST00000485610 NEXMIFQ5QGS0 1516 aa25.53■■□□□ 1.68
SMARCD3-212ENST00000485610 STAG3Q9UJ98 1225 aa25.51■■□□□ 1.67
SMARCD3-212ENST00000485610 MYOM2P54296 1465 aa25.49■■□□□ 1.67
SMARCD3-212ENST00000485610 ZNF326Q5BKZ1 582 aaKnown RBP25.48■■□□□ 1.67
SMARCD3-212ENST00000485610 RPGRIP1LQ68CZ1 1315 aa25.47■■□□□ 1.67
SMARCD3-212ENST00000485610 UHRF1BP1Q6BDS2 1440 aa25.47■■□□□ 1.67
SMARCD3-212ENST00000485610 DCAF11Q8TEB1 546 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms