RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 RTEL1-TNFRSF6BF6WH68 1400 aa15.82■□□□□ 0.12
CPSF4-213ENST00000484112 A2ML1A8K2U0 1454 aa15.82■□□□□ 0.12
CPSF4-213ENST00000484112 VPS8Q8N3P4 1428 aa15.81■□□□□ 0.12
CPSF4-213ENST00000484112 WASHC2CQ9Y4E1 1318 aa15.81■□□□□ 0.12
CPSF4-213ENST00000484112 EHBP1L1Q8N3D4 1523 aa15.8■□□□□ 0.12
CPSF4-213ENST00000484112 TNRQ92752 1358 aa15.8■□□□□ 0.12
CPSF4-213ENST00000484112 DNMT1P26358 1616 aaKnown RBP15.79■□□□□ 0.12
CPSF4-213ENST00000484112 TOM1O60784 492 aa15.77■□□□□ 0.12
CPSF4-213ENST00000484112 HSPA1LP34931 641 aa15.77■□□□□ 0.12
CPSF4-213ENST00000484112 RSPH4AQ5TD94 716 aa15.77■□□□□ 0.12
CPSF4-213ENST00000484112 ANKLE2Q86XL3 938 aa15.77■□□□□ 0.12
CPSF4-213ENST00000484112 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.76■□□□□ 0.11
CPSF4-213ENST00000484112 TSPY4P0CV99 314 aa15.76■□□□□ 0.11
CPSF4-213ENST00000484112 TSPY10P0CW01 314 aa15.76■□□□□ 0.11
CPSF4-213ENST00000484112 CCDC141Q6ZP82 1450 aa15.76■□□□□ 0.11
CPSF4-213ENST00000484112 THEMISQ8N1K5 641 aaPredicted RBP15.75■□□□□ 0.11
CPSF4-213ENST00000484112 MAP3K1Q13233 1512 aa15.74■□□□□ 0.11
CPSF4-213ENST00000484112 PZPP20742 1482 aa15.74■□□□□ 0.11
CPSF4-213ENST00000484112 CAMSAP2Q08AD1 1489 aa15.74■□□□□ 0.11
CPSF4-213ENST00000484112 NCOA2Q15596 1464 aa15.74■□□□□ 0.11
CPSF4-213ENST00000484112 KDM5DQ9BY66 1539 aa15.73■□□□□ 0.11
CPSF4-213ENST00000484112 SHANK2Q9UPX8 1470 aa15.73■□□□□ 0.11
CPSF4-213ENST00000484112 MIA2Q96PC5 1412 aa15.72■□□□□ 0.11
CPSF4-213ENST00000484112 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
CPSF4-213ENST00000484112 NEURL4Q96JN8 1562 aa15.71■□□□□ 0.11
CPSF4-213ENST00000484112 CPS1P31327 1500 aa15.71■□□□□ 0.11
CPSF4-213ENST00000484112 POLR1AO95602 1720 aaPredicted RBP15.71■□□□□ 0.1
CPSF4-213ENST00000484112 NPHP4O75161 1426 aaPredicted RBP15.69■□□□□ 0.1
CPSF4-213ENST00000484112 UGGT1Q9NYU2 1555 aa15.69■□□□□ 0.1
CPSF4-213ENST00000484112 FAM135AQ9P2D6 1515 aa15.68■□□□□ 0.1
CPSF4-213ENST00000484112 NLRP1Q9C000 1473 aa15.68■□□□□ 0.1
CPSF4-213ENST00000484112 PHF23Q9BUL5 403 aaPredicted RBP15.66■□□□□ 0.1
CPSF4-213ENST00000484112 VWDEQ8N2E2 1590 aa15.65■□□□□ 0.1
CPSF4-213ENST00000484112 ARHGEF5Q12774 1597 aa15.64■□□□□ 0.09
CPSF4-213ENST00000484112 MED1Q15648 1581 aaPredicted RBP15.64■□□□□ 0.09
CPSF4-213ENST00000484112 APLP2Q06481 763 aa15.63■□□□□ 0.09
CPSF4-213ENST00000484112 MED14O60244 1454 aa15.63■□□□□ 0.09
CPSF4-213ENST00000484112 LRRC9Q6ZRR7 1453 aa15.63■□□□□ 0.09
CPSF4-213ENST00000484112 ABCC3O15438 1527 aa15.61■□□□□ 0.09
CPSF4-213ENST00000484112 DEPDC5O75140 1603 aa15.61■□□□□ 0.09
CPSF4-213ENST00000484112 KANK4Q5T7N3 995 aaPredicted RBP15.6■□□□□ 0.09
CPSF4-213ENST00000484112 IQGAP1P46940 1657 aa15.6■□□□□ 0.09
CPSF4-213ENST00000484112 ERVK-7P63135 1459 aa15.59■□□□□ 0.09
CPSF4-213ENST00000484112 TXNDC2Q86VQ3 553 aa15.58■□□□□ 0.08
CPSF4-213ENST00000484112 LRRC7Q96NW7 1537 aa15.58■□□□□ 0.08
CPSF4-213ENST00000484112 RNF17Q9BXT8 1623 aaKnown RBP15.57■□□□□ 0.08
CPSF4-213ENST00000484112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.57■□□□□ 0.085e-6■□□□□ 8.1
CPSF4-213ENST00000484112 ALKQ9UM73 1620 aa15.57■□□□□ 0.08
CPSF4-213ENST00000484112 LTKP29376 864 aa15.56■□□□□ 0.08
CPSF4-213ENST00000484112 MAST1Q9Y2H9 1570 aa15.56■□□□□ 0.08
CPSF4-213ENST00000484112 ZC3H13Q5T200 1668 aaKnown RBP15.56■□□□□ 0.08
CPSF4-213ENST00000484112 CFAP65Q6ZU64 1925 aaKnown RBP15.56■□□□□ 0.08
CPSF4-213ENST00000484112 STRCP1A6NGW2 1772 aa15.55■□□□□ 0.08
CPSF4-213ENST00000484112 RRP7BPQ9NSQ0 103 aa15.55■□□□□ 0.08
CPSF4-213ENST00000484112 MYOM3Q5VTT5 1437 aa15.54■□□□□ 0.08
CPSF4-213ENST00000484112 STAG3Q9UJ98 1225 aa15.54■□□□□ 0.08
CPSF4-213ENST00000484112 EID1Q9Y6B2 187 aa15.54■□□□□ 0.08
CPSF4-213ENST00000484112 CEP152O94986 1710 aa15.54■□□□□ 0.08
CPSF4-213ENST00000484112 EIF2AK4Q9P2K8 1649 aaKnown RBP15.54■□□□□ 0.08
CPSF4-213ENST00000484112 SCAF11Q99590 1463 aaKnown RBP15.53■□□□□ 0.08
CPSF4-213ENST00000484112 MROH1Q8NDA8 1641 aa15.53■□□□□ 0.08
CPSF4-213ENST00000484112 DUOX2Q9NRD8 1548 aa15.53■□□□□ 0.08
CPSF4-213ENST00000484112 UBR1Q8IWV7 1749 aa15.51■□□□□ 0.07
CPSF4-213ENST00000484112 KIF15Q9NS87 1388 aa15.51■□□□□ 0.07
CPSF4-213ENST00000484112 SYNMO15061 1565 aa15.5■□□□□ 0.07
CPSF4-213ENST00000484112 CHIC2Q9UKJ5 165 aa15.48■□□□□ 0.07
CPSF4-213ENST00000484112 ABCC5O15440 1437 aa15.48■□□□□ 0.07
CPSF4-213ENST00000484112 KANK1Q14678 1352 aa15.48■□□□□ 0.07
CPSF4-213ENST00000484112 ARHGAP23Q9P227 1491 aa15.47■□□□□ 0.07
CPSF4-213ENST00000484112 ARHGAP31Q2M1Z3 1444 aa15.47■□□□□ 0.07
CPSF4-213ENST00000484112 SLIT1O75093 1534 aa15.47■□□□□ 0.07
CPSF4-213ENST00000484112 ERBINQ96RT1 1412 aa15.46■□□□□ 0.07
CPSF4-213ENST00000484112 RBM33Q96EV2 1170 aaKnown RBP15.46■□□□□ 0.07
CPSF4-213ENST00000484112 BCANQ96GW7 911 aa15.46■□□□□ 0.07
CPSF4-213ENST00000484112 TMEM2Q9UHN6 1383 aa15.46■□□□□ 0.07
CPSF4-213ENST00000484112 IDI1Q13907 227 aa15.45■□□□□ 0.06
CPSF4-213ENST00000484112 SLC26A8Q96RN1 970 aa15.45■□□□□ 0.06
CPSF4-213ENST00000484112 RGS17Q9UGC6 210 aaPredicted RBP15.45■□□□□ 0.06
CPSF4-213ENST00000484112 PRDM15P57071 1507 aaPredicted RBP15.44■□□□□ 0.06
CPSF4-213ENST00000484112 PROSER2Q86WR7 435 aaPredicted RBP15.44■□□□□ 0.06
CPSF4-213ENST00000484112 PIK3C2BO00750 1634 aa15.43■□□□□ 0.06
CPSF4-213ENST00000484112 KCNA6P17658 529 aa15.43■□□□□ 0.06
CPSF4-213ENST00000484112 TMEM94Q12767 1356 aa15.43■□□□□ 0.06
CPSF4-213ENST00000484112 DAPK1P53355 1430 aa15.43■□□□□ 0.06
CPSF4-213ENST00000484112 PTPN23Q9H3S7 1636 aa15.42■□□□□ 0.06
CPSF4-213ENST00000484112 FAM135BQ49AJ0 1406 aa15.41■□□□□ 0.06
CPSF4-213ENST00000484112 ANKRD30AQ9BXX3 1397 aa15.4■□□□□ 0.06
CPSF4-213ENST00000484112 EFCAB6Q5THR3 1501 aa15.4■□□□□ 0.06
CPSF4-213ENST00000484112 XIRP1Q702N8 1843 aaKnown RBP15.4■□□□□ 0.06
CPSF4-213ENST00000484112 CROCC2H7BZ55 1655 aa15.39■□□□□ 0.05
CPSF4-213ENST00000484112 FGD6Q6ZV73 1430 aa15.38■□□□□ 0.05
CPSF4-213ENST00000484112 POTEAQ6S8J7 498 aa15.37■□□□□ 0.05
CPSF4-213ENST00000484112 LMTK2Q8IWU2 1503 aa15.35■□□□□ 0.05
CPSF4-213ENST00000484112 FAM50AQ14320 339 aaKnown RBP15.35■□□□□ 0.05
CPSF4-213ENST00000484112 SLC52A1Q9NWF4 448 aa15.35■□□□□ 0.05
CPSF4-213ENST00000484112 PPP1R15AO75807 674 aaPredicted RBP15.34■□□□□ 0.05
CPSF4-213ENST00000484112 TET3O43151 1660 aa15.34■□□□□ 0.05
CPSF4-213ENST00000484112 MSH6P52701 1360 aa15.34■□□□□ 0.05
CPSF4-213ENST00000484112 NOS1P29475 1434 aa15.34■□□□□ 0.05
CPSF4-213ENST00000484112 ROBO1Q9Y6N7 1651 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms