RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 PTPRKQ15262 1439 aa25.27■■□□□ 1.64
HMGN1-214ENST00000482733 ROCK1Q13464 1354 aa25.26■■□□□ 1.63
HMGN1-214ENST00000482733 FAM135AQ9P2D6 1515 aa25.26■■□□□ 1.63
HMGN1-214ENST00000482733 ZMYM3Q14202 1370 aa25.24■■□□□ 1.63
HMGN1-214ENST00000482733 ITGAEP38570 1179 aa25.24■■□□□ 1.63
HMGN1-214ENST00000482733 CEBPAP49715 358 aaPredicted RBP25.24■■□□□ 1.63
HMGN1-214ENST00000482733 WASHC2CQ9Y4E1 1318 aa25.22■■□□□ 1.63
HMGN1-214ENST00000482733 RNF17Q9BXT8 1623 aaKnown RBP25.21■■□□□ 1.63
HMGN1-214ENST00000482733 MROH2AA6NES4 1674 aa25.2■■□□□ 1.63
HMGN1-214ENST00000482733 KDM5DQ9BY66 1539 aa25.2■■□□□ 1.62
HMGN1-214ENST00000482733 ANKRD50Q9ULJ7 1429 aa25.19■■□□□ 1.62
HMGN1-214ENST00000482733 CLTCQ00610 1675 aaKnown RBP25.17■■□□□ 1.62
HMGN1-214ENST00000482733 C3P01024 1663 aa25.16■■□□□ 1.62
HMGN1-214ENST00000482733 NPATQ14207 1427 aa25.15■■□□□ 1.62
HMGN1-214ENST00000482733 KANK1Q14678 1352 aa25.13■■□□□ 1.61
HMGN1-214ENST00000482733 MROH1Q8NDA8 1641 aa25.12■■□□□ 1.61
HMGN1-214ENST00000482733 PRDM15P57071 1507 aaPredicted RBP25.12■■□□□ 1.61
HMGN1-214ENST00000482733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.11■■□□□ 1.611e-6■□□□□ 9.8
HMGN1-214ENST00000482733 ABCC3O15438 1527 aa25.11■■□□□ 1.61
HMGN1-214ENST00000482733 ZC3H13Q5T200 1668 aaKnown RBP25.1■■□□□ 1.61
HMGN1-214ENST00000482733 DEPDC5O75140 1603 aa25.09■■□□□ 1.61
HMGN1-214ENST00000482733 PZPP20742 1482 aa25.09■■□□□ 1.61
HMGN1-214ENST00000482733 LMTK3Q96Q04 1460 aa25.09■■□□□ 1.61
HMGN1-214ENST00000482733 UHRF1BP1Q6BDS2 1440 aa25.08■■□□□ 1.61
HMGN1-214ENST00000482733 SETD1BQ9UPS6 1966 aaKnown RBP25.05■■□□□ 1.6
HMGN1-214ENST00000482733 PREX1Q8TCU6 1659 aa25.04■■□□□ 1.6
HMGN1-214ENST00000482733 LMTK2Q8IWU2 1503 aa25.02■■□□□ 1.6
HMGN1-214ENST00000482733 ARHGAP31Q2M1Z3 1444 aa25.02■■□□□ 1.6
HMGN1-214ENST00000482733 VWDEQ8N2E2 1590 aa25.01■■□□□ 1.59
HMGN1-214ENST00000482733 FBXO31Q5XUX0 539 aaPredicted RBP25.01■■□□□ 1.59
HMGN1-214ENST00000482733 TNRQ92752 1358 aa25■■□□□ 1.59
HMGN1-214ENST00000482733 NAIPQ13075 1403 aa25■■□□□ 1.59
HMGN1-214ENST00000482733 HFM1A2PYH4 1435 aa24.99■■□□□ 1.59
HMGN1-214ENST00000482733 CAMSAP1Q5T5Y3 1602 aa24.97■■□□□ 1.59
HMGN1-214ENST00000482733 HSPA2P54652 639 aa24.97■■□□□ 1.59
HMGN1-214ENST00000482733 CEP152O94986 1710 aa24.97■■□□□ 1.59
HMGN1-214ENST00000482733 UNC13BO14795 1591 aa24.97■■□□□ 1.59
HMGN1-214ENST00000482733 ERVK-7P63135 1459 aa24.94■■□□□ 1.58
HMGN1-214ENST00000482733 NUP155O75694 1391 aa24.93■■□□□ 1.58
HMGN1-214ENST00000482733 SPATA31D1Q6ZQQ2 1576 aa24.93■■□□□ 1.58
HMGN1-214ENST00000482733 NLRP1Q9C000 1473 aa24.91■■□□□ 1.58
HMGN1-214ENST00000482733 MYO3AQ8NEV4 1616 aa24.91■■□□□ 1.58
HMGN1-214ENST00000482733 EFCAB6Q5THR3 1501 aa24.91■■□□□ 1.58
HMGN1-214ENST00000482733 GCC2Q8IWJ2 1684 aa24.91■■□□□ 1.58
HMGN1-214ENST00000482733 A2ML1A8K2U0 1454 aa24.89■■□□□ 1.58
HMGN1-214ENST00000482733 RPRD2Q5VT52 1461 aaKnown RBP24.89■■□□□ 1.57
HMGN1-214ENST00000482733 CEP170BQ9Y4F5 1589 aaPredicted RBP24.88■■□□□ 1.57
HMGN1-214ENST00000482733 IQGAP3Q86VI3 1631 aa24.86■■□□□ 1.57
HMGN1-214ENST00000482733 TET3O43151 1660 aa24.86■■□□□ 1.57
HMGN1-214ENST00000482733 ZNF142P52746 1687 aaPredicted RBP24.86■■□□□ 1.57
HMGN1-214ENST00000482733 ACIN1Q9UKV3 1341 aaKnown RBP24.84■■□□□ 1.57
HMGN1-214ENST00000482733 NOS1P29475 1434 aa24.83■■□□□ 1.57
HMGN1-214ENST00000482733 THEMISQ8N1K5 641 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-214ENST00000482733 TRIM52Q96A61 297 aa24.81■■□□□ 1.56
HMGN1-214ENST00000482733 DMRT2Q9Y5R5 561 aa24.81■■□□□ 1.56
HMGN1-214ENST00000482733 PLA2R1Q13018 1463 aa24.8■■□□□ 1.56
HMGN1-214ENST00000482733 SLC52A1Q9NWF4 448 aa24.79■■□□□ 1.56
HMGN1-214ENST00000482733 SETD5Q9C0A6 1442 aa24.78■■□□□ 1.56
HMGN1-214ENST00000482733 UGGT1Q9NYU2 1555 aa24.78■■□□□ 1.56
HMGN1-214ENST00000482733 PKD2Q13563 968 aa24.77■■□□□ 1.56
HMGN1-214ENST00000482733 IDI1Q13907 227 aa24.74■■□□□ 1.55
HMGN1-214ENST00000482733 CFAP65Q6ZU64 1925 aaKnown RBP24.73■■□□□ 1.55
HMGN1-214ENST00000482733 SYNMO15061 1565 aa24.73■■□□□ 1.55
HMGN1-214ENST00000482733 E9PCH4 1651 aa24.72■■□□□ 1.55
HMGN1-214ENST00000482733 SLC4A1APQ9BWU0 796 aaKnown RBP24.72■■□□□ 1.55
HMGN1-214ENST00000482733 STAG3Q9UJ98 1225 aa24.72■■□□□ 1.55
HMGN1-214ENST00000482733 PTPRTO14522 1441 aa24.7■■□□□ 1.55
HMGN1-214ENST00000482733 STRCQ7RTU9 1775 aa24.7■■□□□ 1.55
HMGN1-214ENST00000482733 NCKAP5LQ9HCH0 1330 aa24.7■■□□□ 1.54
HMGN1-214ENST00000482733 ANKLE2Q86XL3 938 aa24.7■■□□□ 1.54
HMGN1-214ENST00000482733 RAB3GAP2Q9H2M9 1393 aa24.67■■□□□ 1.54
HMGN1-214ENST00000482733 HRCP23327 699 aa24.67■■□□□ 1.54
HMGN1-214ENST00000482733 PIK3C2BO00750 1634 aa24.66■■□□□ 1.54
HMGN1-214ENST00000482733 UBR1Q8IWV7 1749 aa24.65■■□□□ 1.54
HMGN1-214ENST00000482733 KDM5AP29375 1690 aaKnown RBP24.64■■□□□ 1.53
HMGN1-214ENST00000482733 ADGRB3O60242 1522 aa24.63■■□□□ 1.53
HMGN1-214ENST00000482733 MPHOSPH9Q99550 1183 aa24.63■■□□□ 1.53
HMGN1-214ENST00000482733 SLIT1O75093 1534 aa24.62■■□□□ 1.53
HMGN1-214ENST00000482733 EID1Q9Y6B2 187 aa24.62■■□□□ 1.53
HMGN1-214ENST00000482733 TMEM2Q9UHN6 1383 aa24.62■■□□□ 1.53
HMGN1-214ENST00000482733 ARHGAP23Q9P227 1491 aa24.62■■□□□ 1.53
HMGN1-214ENST00000482733 TXNDC2Q86VQ3 553 aa24.59■■□□□ 1.53
HMGN1-214ENST00000482733 MED14O60244 1454 aa24.58■■□□□ 1.53
HMGN1-214ENST00000482733 CHGAP10645 457 aaKnown RBP24.58■■□□□ 1.53
HMGN1-214ENST00000482733 SPHKAPQ2M3C7 1700 aa24.58■■□□□ 1.52
HMGN1-214ENST00000482733 SCAF11Q99590 1463 aaKnown RBP24.58■■□□□ 1.52
HMGN1-214ENST00000482733 TRPM2O94759 1503 aa24.57■■□□□ 1.52
HMGN1-214ENST00000482733 HDGFP51858 240 aaKnown RBP24.57■■□□□ 1.52
HMGN1-214ENST00000482733 NPHP4O75161 1426 aaPredicted RBP24.56■■□□□ 1.52
HMGN1-214ENST00000482733 POLR1AO95602 1720 aaPredicted RBP24.55■■□□□ 1.52
HMGN1-214ENST00000482733 NEURL4Q96JN8 1562 aa24.55■■□□□ 1.52
HMGN1-214ENST00000482733 LTKP29376 864 aa24.55■■□□□ 1.52
HMGN1-214ENST00000482733 TMEM131LA2VDJ0 1609 aa24.53■■□□□ 1.52
HMGN1-214ENST00000482733 TRIM26Q12899 539 aaPredicted RBP24.52■■□□□ 1.52
HMGN1-214ENST00000482733 FOXD1Q16676 465 aa24.51■■□□□ 1.51
HMGN1-214ENST00000482733 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.51■■□□□ 1.51
HMGN1-214ENST00000482733 RIMS2Q9UQ26 1411 aa24.49■■□□□ 1.51
HMGN1-214ENST00000482733 ZFYVE9O95405 1425 aa24.48■■□□□ 1.51
HMGN1-214ENST00000482733 IQGAP1P46940 1657 aa24.46■■□□□ 1.51
HMGN1-214ENST00000482733 CLTCL1P53675 1640 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms