RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 GPATCH8Q9UKJ3 1502 aaKnown RBP12.48□□□□□ -0.41
USP54-213ENST00000481991 CCDC18Q5T9S5 1454 aa12.47□□□□□ -0.41
USP54-213ENST00000481991 FAM135AQ9P2D6 1515 aa12.47□□□□□ -0.41
USP54-213ENST00000481991 CASKIN1Q8WXD9 1431 aa12.46□□□□□ -0.41
USP54-213ENST00000481991 DHX29Q7Z478 1369 aaKnown RBP12.46□□□□□ -0.41
USP54-213ENST00000481991 CDC42BPAQ5VT25 1732 aa12.46□□□□□ -0.41
USP54-213ENST00000481991 LRRIQ1Q96JM4 1722 aa12.46□□□□□ -0.41
USP54-213ENST00000481991 PLEKHH2Q8IVE3 1493 aa12.46□□□□□ -0.42
USP54-213ENST00000481991 MIA2Q96PC5 1412 aa12.45□□□□□ -0.42
USP54-213ENST00000481991 KIAA1107Q9UPP5 1409 aa12.45□□□□□ -0.42
USP54-213ENST00000481991 MTUS2Q5JR59 1369 aa12.44□□□□□ -0.42
USP54-213ENST00000481991 TXNDC2Q86VQ3 553 aa12.44□□□□□ -0.42
USP54-213ENST00000481991 LRRC7Q96NW7 1537 aa12.43□□□□□ -0.42
USP54-213ENST00000481991 POLR1AO95602 1720 aaPredicted RBP12.43□□□□□ -0.42
USP54-213ENST00000481991 RBM33Q96EV2 1170 aaKnown RBP12.43□□□□□ -0.42
USP54-213ENST00000481991 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
USP54-213ENST00000481991 NEURL4Q96JN8 1562 aa12.43□□□□□ -0.42
USP54-213ENST00000481991 UGGT1Q9NYU2 1555 aa12.43□□□□□ -0.42
USP54-213ENST00000481991 TSPY4P0CV99 314 aa12.42□□□□□ -0.42
USP54-213ENST00000481991 TSPY10P0CW01 314 aa12.42□□□□□ -0.42
USP54-213ENST00000481991 BCANQ96GW7 911 aa12.42□□□□□ -0.42
USP54-213ENST00000481991 STAG3Q9UJ98 1225 aa12.42□□□□□ -0.42
USP54-213ENST00000481991 EID1Q9Y6B2 187 aa12.42□□□□□ -0.42
USP54-213ENST00000481991 MEX3CQ5U5Q3 659 aaKnown RBP12.4□□□□□ -0.42
USP54-213ENST00000481991 PROSER2Q86WR7 435 aaPredicted RBP12.4□□□□□ -0.42
USP54-213ENST00000481991 TRIM52Q96A61 297 aa12.4□□□□□ -0.42
USP54-213ENST00000481991 ALKQ9UM73 1620 aa12.4□□□□□ -0.42
USP54-213ENST00000481991 PLXNC1O60486 1568 aa12.39□□□□□ -0.43
USP54-213ENST00000481991 PZPP20742 1482 aa12.39□□□□□ -0.43
USP54-213ENST00000481991 LTKP29376 864 aa12.38□□□□□ -0.43
USP54-213ENST00000481991 MED14O60244 1454 aa12.38□□□□□ -0.43
USP54-213ENST00000481991 NLRP1Q9C000 1473 aa12.38□□□□□ -0.43
USP54-213ENST00000481991 INO80Q9ULG1 1556 aaPredicted RBP12.38□□□□□ -0.43
USP54-213ENST00000481991 ADGBQ8N7X0 1667 aa12.38□□□□□ -0.43
USP54-213ENST00000481991 RTEL1-TNFRSF6BF6WH68 1400 aa12.37□□□□□ -0.43
USP54-213ENST00000481991 RSPH4AQ5TD94 716 aa12.36□□□□□ -0.43
USP54-213ENST00000481991 KDM5DQ9BY66 1539 aa12.36□□□□□ -0.43
USP54-213ENST00000481991 IQGAP1P46940 1657 aa12.35□□□□□ -0.43
USP54-213ENST00000481991 UPF1Q92900 1129 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP54-213ENST00000481991 FYCO1Q9BQS8 1478 aa12.34□□□□□ -0.43
USP54-213ENST00000481991 SLC26A8Q96RN1 970 aa12.34□□□□□ -0.43
USP54-213ENST00000481991 FAM135BQ49AJ0 1406 aa12.34□□□□□ -0.43
USP54-213ENST00000481991 DEPDC5O75140 1603 aa12.33□□□□□ -0.43
USP54-213ENST00000481991 RNF17Q9BXT8 1623 aaKnown RBP12.33□□□□□ -0.43
USP54-213ENST00000481991 STRCP1A6NGW2 1772 aa12.33□□□□□ -0.44
USP54-213ENST00000481991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP54-213ENST00000481991 MBD5Q9P267 1494 aa12.33□□□□□ -0.44
USP54-213ENST00000481991 TMEM94Q12767 1356 aa12.32□□□□□ -0.44
USP54-213ENST00000481991 SLAIN2Q9P270 581 aa12.32□□□□□ -0.44
USP54-213ENST00000481991 CFAP65Q6ZU64 1925 aaKnown RBP12.31□□□□□ -0.44
USP54-213ENST00000481991 KCNA6P17658 529 aa12.31□□□□□ -0.44
USP54-213ENST00000481991 C14orf37Q86TY3 774 aa12.31□□□□□ -0.44
USP54-213ENST00000481991 SCAF11Q99590 1463 aaKnown RBP12.3□□□□□ -0.44
USP54-213ENST00000481991 NUTM2BA6NNL0 878 aaPredicted RBP12.3□□□□□ -0.44
USP54-213ENST00000481991 NUTM2EB1AL46 878 aaPredicted RBP12.3□□□□□ -0.44
USP54-213ENST00000481991 RXRBP28702 533 aa12.3□□□□□ -0.44
USP54-213ENST00000481991 ZNF772Q68DY9 489 aaPredicted RBP12.3□□□□□ -0.44
USP54-213ENST00000481991 NUTM2AQ8IVF1 878 aaPredicted RBP12.3□□□□□ -0.44
USP54-213ENST00000481991 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.44
USP54-213ENST00000481991 SYNMO15061 1565 aa12.27□□□□□ -0.44
USP54-213ENST00000481991 SETD1AO15047 1707 aaKnown RBP12.27□□□□□ -0.45
USP54-213ENST00000481991 JCADQ9P266 1359 aa12.27□□□□□ -0.45
USP54-213ENST00000481991 MSH6P52701 1360 aa12.26□□□□□ -0.45
USP54-213ENST00000481991 ERVK-7P63135 1459 aa12.25□□□□□ -0.45
USP54-213ENST00000481991 TIAM1Q13009 1591 aa12.24□□□□□ -0.45
USP54-213ENST00000481991 NUTM2DQ5VT03 806 aaPredicted RBP12.24□□□□□ -0.45
USP54-213ENST00000481991 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
USP54-213ENST00000481991 CAMSAP2Q08AD1 1489 aa12.23□□□□□ -0.45
USP54-213ENST00000481991 IDI1Q13907 227 aa12.23□□□□□ -0.45
USP54-213ENST00000481991 ROBO1Q9Y6N7 1651 aa12.22□□□□□ -0.45
USP54-213ENST00000481991 PPP1R15AO75807 674 aaPredicted RBP12.22□□□□□ -0.45
USP54-213ENST00000481991 ABCC3O15438 1527 aa12.21□□□□□ -0.45
USP54-213ENST00000481991 NCOA2Q15596 1464 aa12.21□□□□□ -0.45
USP54-213ENST00000481991 TMEM2Q9UHN6 1383 aa12.21□□□□□ -0.45
USP54-213ENST00000481991 SPATA31A6Q5VVP1 1343 aa12.21□□□□□ -0.45
USP54-213ENST00000481991 CEP162Q5TB80 1403 aa12.2□□□□□ -0.46
USP54-213ENST00000481991 ZC3H13Q5T200 1668 aaKnown RBP12.2□□□□□ -0.46
USP54-213ENST00000481991 ATF3P18847 181 aa12.2□□□□□ -0.46
USP54-213ENST00000481991 XIRP1Q702N8 1843 aaKnown RBP12.2□□□□□ -0.46
USP54-213ENST00000481991 CHGAP10645 457 aaKnown RBP12.19□□□□□ -0.46
USP54-213ENST00000481991 PHLPP1O60346 1717 aa12.19□□□□□ -0.46
USP54-213ENST00000481991 UBR1Q8IWV7 1749 aa12.19□□□□□ -0.46
USP54-213ENST00000481991 EHBP1L1Q8N3D4 1523 aa12.18□□□□□ -0.46
USP54-213ENST00000481991 HDGFP51858 240 aaKnown RBP12.18□□□□□ -0.46
USP54-213ENST00000481991 QTRT2Q9H974 415 aaKnown RBP12.18□□□□□ -0.46
USP54-213ENST00000481991 KANK1Q14678 1352 aa12.18□□□□□ -0.46
USP54-213ENST00000481991 AFF2P51816 1311 aa12.17□□□□□ -0.46
USP54-213ENST00000481991 LRRC9Q6ZRR7 1453 aa12.17□□□□□ -0.46
USP54-213ENST00000481991 ARHGAP23Q9P227 1491 aa12.17□□□□□ -0.46
USP54-213ENST00000481991 C8orf37Q96NL8 207 aa12.17□□□□□ -0.46
USP54-213ENST00000481991 SLIT1O75093 1534 aa12.16□□□□□ -0.46
USP54-213ENST00000481991 FOXD1Q16676 465 aa12.16□□□□□ -0.46
USP54-213ENST00000481991 ZRANB1Q9UGI0 708 aa12.16□□□□□ -0.46
USP54-213ENST00000481991 CADPS2Q86UW7 1296 aa12.15□□□□□ -0.46
USP54-213ENST00000481991 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
USP54-213ENST00000481991 CEP152O94986 1710 aa12.14□□□□□ -0.47
USP54-213ENST00000481991 C19orf44Q9H6X5 657 aa12.14□□□□□ -0.47
USP54-213ENST00000481991 PRDM15P57071 1507 aaPredicted RBP12.14□□□□□ -0.47
USP54-213ENST00000481991 LRP6O75581 1613 aa12.13□□□□□ -0.47
USP54-213ENST00000481991 NGLY1Q96IV0 654 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms