RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 ARID4BQ4LE39 1312 aaPredicted RBP17.27■□□□□ 0.35
HPS4-212ENST00000481910 REREQ9P2R6 1566 aa17.25■□□□□ 0.35
HPS4-212ENST00000481910 SIGLEC1Q9BZZ2 1709 aa17.23■□□□□ 0.35
HPS4-212ENST00000481910 RAB3GAP2Q9H2M9 1393 aa17.23■□□□□ 0.35
HPS4-212ENST00000481910 GGT6Q6P531 493 aa17.22■□□□□ 0.35
HPS4-212ENST00000481910 EIF2AK4Q9P2K8 1649 aaKnown RBP17.22■□□□□ 0.35
HPS4-212ENST00000481910 AGLP35573 1532 aa17.22■□□□□ 0.35
HPS4-212ENST00000481910 MLECQ14165 292 aa17.2■□□□□ 0.34
HPS4-212ENST00000481910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.2■□□□□ 0.34
HPS4-212ENST00000481910 TRIM52Q96A61 297 aa17.19■□□□□ 0.34
HPS4-212ENST00000481910 BCORL1Q5H9F3 1711 aa17.18■□□□□ 0.34
HPS4-212ENST00000481910 HRCP23327 699 aa17.18■□□□□ 0.34
HPS4-212ENST00000481910 KCNA4P22459 653 aa17.17■□□□□ 0.34
HPS4-212ENST00000481910 ACIN1Q9UKV3 1341 aaKnown RBP17.16■□□□□ 0.34
HPS4-212ENST00000481910 RNF17Q9BXT8 1623 aaKnown RBP17.15■□□□□ 0.34
HPS4-212ENST00000481910 NUP155O75694 1391 aa17.15■□□□□ 0.34
HPS4-212ENST00000481910 KANK1Q14678 1352 aa17.14■□□□□ 0.33
HPS4-212ENST00000481910 DEPDC5O75140 1603 aa17.14■□□□□ 0.33
HPS4-212ENST00000481910 WASHC2CQ9Y4E1 1318 aa17.13■□□□□ 0.33
HPS4-212ENST00000481910 UNC13BO14795 1591 aa17.13■□□□□ 0.33
HPS4-212ENST00000481910 ESF1Q9H501 851 aaKnown RBP17.12■□□□□ 0.33
HPS4-212ENST00000481910 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
HPS4-212ENST00000481910 MROH1Q8NDA8 1641 aa17.12■□□□□ 0.33
HPS4-212ENST00000481910 PRDM15P57071 1507 aaPredicted RBP17.12■□□□□ 0.33
HPS4-212ENST00000481910 SLC4A1APQ9BWU0 796 aaKnown RBP17.09■□□□□ 0.33
HPS4-212ENST00000481910 MPHOSPH9Q99550 1183 aa17.08■□□□□ 0.32
HPS4-212ENST00000481910 FAM135AQ9P2D6 1515 aa17.07■□□□□ 0.32
HPS4-212ENST00000481910 VWDEQ8N2E2 1590 aa17.07■□□□□ 0.32
HPS4-212ENST00000481910 IQGAP3Q86VI3 1631 aa17.07■□□□□ 0.32
HPS4-212ENST00000481910 KDM5DQ9BY66 1539 aa17.07■□□□□ 0.32
HPS4-212ENST00000481910 CEP152O94986 1710 aa17.06■□□□□ 0.32
HPS4-212ENST00000481910 ABCC3O15438 1527 aa17.06■□□□□ 0.32
HPS4-212ENST00000481910 PZPP20742 1482 aa17.05■□□□□ 0.32
HPS4-212ENST00000481910 CLTCQ00610 1675 aaKnown RBP17.05■□□□□ 0.32
HPS4-212ENST00000481910 FER1L4A9Z1Z3 1794 aa17.04■□□□□ 0.32
HPS4-212ENST00000481910 ZC3H13Q5T200 1668 aaKnown RBP17.04■□□□□ 0.32
HPS4-212ENST00000481910 ADAMTSL3P82987 1691 aa17.04■□□□□ 0.32
HPS4-212ENST00000481910 CNTLNQ9NXG0 1405 aa17.03■□□□□ 0.32
HPS4-212ENST00000481910 PKD2Q13563 968 aa17.03■□□□□ 0.32
HPS4-212ENST00000481910 LMTK2Q8IWU2 1503 aa17.03■□□□□ 0.32
HPS4-212ENST00000481910 MADDQ8WXG6 1647 aa17.02■□□□□ 0.32
HPS4-212ENST00000481910 TET3O43151 1660 aa17.02■□□□□ 0.31
HPS4-212ENST00000481910 ZMYM3Q14202 1370 aa17.01■□□□□ 0.31
HPS4-212ENST00000481910 CAMSAP1Q5T5Y3 1602 aa17.01■□□□□ 0.31
HPS4-212ENST00000481910 FOXD1Q16676 465 aa17■□□□□ 0.31
HPS4-212ENST00000481910 CFAP65Q6ZU64 1925 aaKnown RBP16.99■□□□□ 0.31
HPS4-212ENST00000481910 RIMS1Q86UR5 1692 aaKnown RBP16.99■□□□□ 0.31
HPS4-212ENST00000481910 DHX57Q6P158 1386 aaKnown RBP16.99■□□□□ 0.31
HPS4-212ENST00000481910 EFCAB6Q5THR3 1501 aa16.98■□□□□ 0.31
HPS4-212ENST00000481910 KDM4FA0A1W2PPD8 638 aa16.98■□□□□ 0.31
HPS4-212ENST00000481910 CEBPAP49715 358 aaPredicted RBP16.98■□□□□ 0.31
HPS4-212ENST00000481910 RTN4Q9NQC3 1192 aaKnown RBP16.98■□□□□ 0.31
HPS4-212ENST00000481910 MROH2AA6NES4 1674 aa16.98■□□□□ 0.31
HPS4-212ENST00000481910 E9PCH4 1651 aa16.98■□□□□ 0.31
HPS4-212ENST00000481910 NPATQ14207 1427 aa16.97■□□□□ 0.31
HPS4-212ENST00000481910 ARHGAP31Q2M1Z3 1444 aa16.97■□□□□ 0.31
HPS4-212ENST00000481910 FBXO31Q5XUX0 539 aaPredicted RBP16.96■□□□□ 0.3
HPS4-212ENST00000481910 RPRD2Q5VT52 1461 aaKnown RBP16.95■□□□□ 0.3
HPS4-212ENST00000481910 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
HPS4-212ENST00000481910 C3P01024 1663 aa16.94■□□□□ 0.3
HPS4-212ENST00000481910 PTPRMP28827 1452 aa16.92■□□□□ 0.3
HPS4-212ENST00000481910 PREX1Q8TCU6 1659 aa16.9■□□□□ 0.3
HPS4-212ENST00000481910 ERVK-7P63135 1459 aa16.89■□□□□ 0.29
HPS4-212ENST00000481910 ANKRD30BQ9BXX2 1392 aa16.89■□□□□ 0.29
HPS4-212ENST00000481910 SPHKAPQ2M3C7 1700 aa16.88■□□□□ 0.29
HPS4-212ENST00000481910 PTPRTO14522 1441 aa16.88■□□□□ 0.29
HPS4-212ENST00000481910 NOS1P29475 1434 aa16.88■□□□□ 0.29
HPS4-212ENST00000481910 PLA2R1Q13018 1463 aa16.87■□□□□ 0.29
HPS4-212ENST00000481910 SPATA31D1Q6ZQQ2 1576 aa16.87■□□□□ 0.29
HPS4-212ENST00000481910 TNRQ92752 1358 aa16.85■□□□□ 0.29
HPS4-212ENST00000481910 SENP3Q9H4L4 574 aaPredicted RBP16.85■□□□□ 0.29
HPS4-212ENST00000481910 TRPM2O94759 1503 aa16.85■□□□□ 0.29
HPS4-212ENST00000481910 SLC52A1Q9NWF4 448 aa16.84■□□□□ 0.29
HPS4-212ENST00000481910 CCDC144AA2RUR9 1427 aa16.84■□□□□ 0.29
HPS4-212ENST00000481910 SYNMO15061 1565 aa16.84■□□□□ 0.29
HPS4-212ENST00000481910 SETD1BQ9UPS6 1966 aaKnown RBP16.84■□□□□ 0.29
HPS4-212ENST00000481910 CLSPNQ9HAW4 1339 aa16.83■□□□□ 0.29
HPS4-212ENST00000481910 IDI1Q13907 227 aa16.83■□□□□ 0.28
HPS4-212ENST00000481910 POTEDQ86YR6 584 aa16.83■□□□□ 0.28
HPS4-212ENST00000481910 SIN3AQ96ST3 1273 aa16.83■□□□□ 0.28
HPS4-212ENST00000481910 UGGT1Q9NYU2 1555 aa16.83■□□□□ 0.28
HPS4-212ENST00000481910 NEUROD1Q13562 356 aa16.82■□□□□ 0.28
HPS4-212ENST00000481910 AMER1Q5JTC6 1135 aaPredicted RBP16.81■□□□□ 0.28
HPS4-212ENST00000481910 CLTCL1P53675 1640 aa16.8■□□□□ 0.28
HPS4-212ENST00000481910 CHGAP10645 457 aaKnown RBP16.8■□□□□ 0.28
HPS4-212ENST00000481910 STAG3Q9UJ98 1225 aa16.8■□□□□ 0.28
HPS4-212ENST00000481910 PIK3C2BO00750 1634 aa16.79■□□□□ 0.28
HPS4-212ENST00000481910 NLRP1Q9C000 1473 aa16.78■□□□□ 0.28
HPS4-212ENST00000481910 KIF1BO60333 1816 aa16.77■□□□□ 0.28
HPS4-212ENST00000481910 MYO3AQ8NEV4 1616 aa16.76■□□□□ 0.27
HPS4-212ENST00000481910 RGL3Q3MIN7 710 aa16.76■□□□□ 0.27
HPS4-212ENST00000481910 UHRF1BP1Q6BDS2 1440 aa16.75■□□□□ 0.27
HPS4-212ENST00000481910 ZNF326Q5BKZ1 582 aaKnown RBP16.74■□□□□ 0.27
HPS4-212ENST00000481910 A2ML1A8K2U0 1454 aa16.73■□□□□ 0.27
HPS4-212ENST00000481910 CEP170BQ9Y4F5 1589 aaPredicted RBP16.72■□□□□ 0.27
HPS4-212ENST00000481910 TMEM131LA2VDJ0 1609 aa16.72■□□□□ 0.27
HPS4-212ENST00000481910 THEMISQ8N1K5 641 aaPredicted RBP16.72■□□□□ 0.27
HPS4-212ENST00000481910 MYO5BQ9ULV0 1848 aa16.71■□□□□ 0.27
HPS4-212ENST00000481910 SPATA31E1Q6ZUB1 1445 aa16.71■□□□□ 0.27
HPS4-212ENST00000481910 UBR1Q8IWV7 1749 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms