RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 PREX1Q8TCU6 1659 aa6.8□□□□□ -1.32
VPS13D-208ENST00000481484 ARID3CA6NKF2 412 aa6.79□□□□□ -1.32
VPS13D-208ENST00000481484 UBTFP17480 764 aaKnown RBP6.79□□□□□ -1.32
VPS13D-208ENST00000481484 DIP2CQ9Y2E4 1556 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 EHBP1L1Q8N3D4 1523 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 ARHGEF12Q9NZN5 1544 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 GALR2O43603 387 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-208ENST00000481484 POTEIP0CG38 1075 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 ABCA6Q8N139 1617 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 SIGLEC1Q9BZZ2 1709 aa6.78□□□□□ -1.32
VPS13D-208ENST00000481484 MROH2AA6NES4 1674 aa6.77□□□□□ -1.32
VPS13D-208ENST00000481484 IFNLR1Q8IU57 520 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-208ENST00000481484 PLEKHH2Q8IVE3 1493 aa6.77□□□□□ -1.33
VPS13D-208ENST00000481484 SETD1BQ9UPS6 1966 aaKnown RBP6.77□□□□□ -1.33
VPS13D-208ENST00000481484 SCAPERQ9BY12 1400 aa6.76□□□□□ -1.33
VPS13D-208ENST00000481484 AGLP35573 1532 aa6.76□□□□□ -1.33
VPS13D-208ENST00000481484 KIF12Q96FN5 646 aa6.76□□□□□ -1.33
VPS13D-208ENST00000481484 ATP10AO60312 1499 aa6.76□□□□□ -1.33
VPS13D-208ENST00000481484 MLH3Q9UHC1 1453 aa6.76□□□□□ -1.33
VPS13D-208ENST00000481484 INO80Q9ULG1 1556 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-208ENST00000481484 KIDINS220Q9ULH0 1771 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 ADGBQ8N7X0 1667 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 LMTK3Q96Q04 1460 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 RAPGEF3O95398 923 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 RANGAP1P46060 587 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-208ENST00000481484 KLHL34Q8N239 644 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 FAM135AQ9P2D6 1515 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 YEATS2Q9ULM3 1422 aa6.75□□□□□ -1.33
VPS13D-208ENST00000481484 SAMD9LQ8IVG5 1584 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 SUPT6HQ7KZ85 1726 aaKnown RBP6.74□□□□□ -1.33
VPS13D-208ENST00000481484 EFCAB2Q5VUJ9 269 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 FAM212AQ96EL1 285 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 DCBLD2Q96PD2 775 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 SYCP2Q9BX26 1530 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 PLXNC1O60486 1568 aa6.74□□□□□ -1.33
VPS13D-208ENST00000481484 ATP7AQ04656 1500 aa6.73□□□□□ -1.33
VPS13D-208ENST00000481484 MS4A3Q96HJ5 214 aa6.73□□□□□ -1.33
VPS13D-208ENST00000481484 TIAM1Q13009 1591 aa6.73□□□□□ -1.33
VPS13D-208ENST00000481484 C3P01024 1663 aa6.72□□□□□ -1.33
VPS13D-208ENST00000481484 ZNF142P52746 1687 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-208ENST00000481484 MAP3K13O43283 966 aa6.72□□□□□ -1.33
VPS13D-208ENST00000481484 CNTLNQ9NXG0 1405 aa6.72□□□□□ -1.33
VPS13D-208ENST00000481484 ARID4BQ4LE39 1312 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-208ENST00000481484 CEP162Q5TB80 1403 aa6.71□□□□□ -1.34
VPS13D-208ENST00000481484 KIAA1107Q9UPP5 1409 aa6.71□□□□□ -1.34
VPS13D-208ENST00000481484 DCAF8Q5TAQ9 597 aa6.71□□□□□ -1.34
VPS13D-208ENST00000481484 SGIP1Q9BQI5 828 aa6.71□□□□□ -1.34
VPS13D-208ENST00000481484 MTUS2Q5JR59 1369 aa6.69□□□□□ -1.34
VPS13D-208ENST00000481484 SPOCK2Q92563 424 aa6.69□□□□□ -1.34
VPS13D-208ENST00000481484 GPATCH8Q9UKJ3 1502 aaKnown RBP6.69□□□□□ -1.34
VPS13D-208ENST00000481484 ARHGEF5Q12774 1597 aa6.69□□□□□ -1.34
VPS13D-208ENST00000481484 MYO3AQ8NEV4 1616 aa6.68□□□□□ -1.34
VPS13D-208ENST00000481484 UHRF1BP1Q6BDS2 1440 aa6.68□□□□□ -1.34
VPS13D-208ENST00000481484 ZC3H13Q5T200 1668 aaKnown RBP6.68□□□□□ -1.34
VPS13D-208ENST00000481484 MAP3K1Q13233 1512 aa6.68□□□□□ -1.34
VPS13D-208ENST00000481484 GSE1Q14687 1217 aa6.68□□□□□ -1.34
VPS13D-208ENST00000481484 ASTLQ6HA08 431 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-208ENST00000481484 ATP1B4Q9UN42 357 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-208ENST00000481484 CCNB3Q8WWL7 1395 aa6.68□□□□□ -1.34
VPS13D-208ENST00000481484 NPATQ14207 1427 aa6.67□□□□□ -1.34
VPS13D-208ENST00000481484 TRAPPC8Q9Y2L5 1435 aa6.67□□□□□ -1.34
VPS13D-208ENST00000481484 CCDC141Q6ZP82 1450 aa6.67□□□□□ -1.34
VPS13D-208ENST00000481484 ATMINO43313 823 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-208ENST00000481484 EIF2AK4Q9P2K8 1649 aaKnown RBP6.67□□□□□ -1.34
VPS13D-208ENST00000481484 VPS8Q8N3P4 1428 aa6.67□□□□□ -1.34
VPS13D-208ENST00000481484 CROCC2H7BZ55 1655 aa6.66□□□□□ -1.34
VPS13D-208ENST00000481484 CLTCQ00610 1675 aaKnown RBP6.66□□□□□ -1.34
VPS13D-208ENST00000481484 PCDHB13Q9Y5F0 798 aa6.66□□□□□ -1.34
VPS13D-208ENST00000481484 RTEL1-TNFRSF6BF6WH68 1400 aa6.66□□□□□ -1.34
VPS13D-208ENST00000481484 A2MP01023 1474 aa6.66□□□□□ -1.34
VPS13D-208ENST00000481484 CAMSAP2Q08AD1 1489 aa6.66□□□□□ -1.34
VPS13D-208ENST00000481484 MAST1Q9Y2H9 1570 aa6.65□□□□□ -1.34
VPS13D-208ENST00000481484 RNF17Q9BXT8 1623 aaKnown RBP6.65□□□□□ -1.34
VPS13D-208ENST00000481484 STRCQ7RTU9 1775 aa6.65□□□□□ -1.34
VPS13D-208ENST00000481484 PYGBP11216 843 aa6.65□□□□□ -1.34
VPS13D-208ENST00000481484 CHRM1P11229 460 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-208ENST00000481484 TIE1P35590 1138 aa6.65□□□□□ -1.34
VPS13D-208ENST00000481484 PELP1Q8IZL8 1130 aaKnown RBP6.65□□□□□ -1.34
VPS13D-208ENST00000481484 TRPC6Q9Y210 931 aa6.65□□□□□ -1.34
VPS13D-208ENST00000481484 NCOA2Q15596 1464 aa6.65□□□□□ -1.35
VPS13D-208ENST00000481484 KDM5DQ9BY66 1539 aa6.65□□□□□ -1.35
VPS13D-208ENST00000481484 POLR1AO95602 1720 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-208ENST00000481484 IFNL1Q8IU54 200 aa6.64□□□□□ -1.35
VPS13D-208ENST00000481484 SPAG9O60271 1321 aaKnown RBP6.64□□□□□ -1.35
VPS13D-208ENST00000481484 IQSEC2Q5JU85 1478 aa6.64□□□□□ -1.35
VPS13D-208ENST00000481484 CEP170BQ9Y4F5 1589 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-208ENST00000481484 PLA2R1Q13018 1463 aa6.63□□□□□ -1.35
VPS13D-208ENST00000481484 BMP2KQ9NSY1 1161 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-208ENST00000481484 MBD5Q9P267 1494 aa6.63□□□□□ -1.35
VPS13D-208ENST00000481484 LRRC9Q6ZRR7 1453 aa6.62□□□□□ -1.35
VPS13D-208ENST00000481484 SHANK2Q9UPX8 1470 aa6.62□□□□□ -1.35
VPS13D-208ENST00000481484 ATN1P54259 1190 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-208ENST00000481484 LHX8Q68G74 356 aa6.62□□□□□ -1.35
VPS13D-208ENST00000481484 AFAP1Q8N556 730 aa6.62□□□□□ -1.35
VPS13D-208ENST00000481484 ESF1Q9H501 851 aaKnown RBP6.62□□□□□ -1.35
VPS13D-208ENST00000481484 CFDP1Q9UEE9 299 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-208ENST00000481484 MYT1LQ9UL68 1186 aa6.62□□□□□ -1.35
VPS13D-208ENST00000481484 PTPRTO14522 1441 aa6.61□□□□□ -1.35
VPS13D-208ENST00000481484 NCOA1Q15788 1441 aa6.61□□□□□ -1.35
VPS13D-208ENST00000481484 PZPP20742 1482 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms