RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 RNF17Q9BXT8 1623 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-207ENST00000481335 PLA2R1Q13018 1463 aa19.11■□□□□ 0.65
SQSTM1-207ENST00000481335 ZC3H13Q5T200 1668 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-207ENST00000481335 CAMSAP1Q5T5Y3 1602 aa19.11■□□□□ 0.65
SQSTM1-207ENST00000481335 KANK4Q5T7N3 995 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-207ENST00000481335 APLP2Q06481 763 aa19.09■□□□□ 0.65
SQSTM1-207ENST00000481335 PZPP20742 1482 aa19.09■□□□□ 0.65
SQSTM1-207ENST00000481335 CROCC2H7BZ55 1655 aa19.08■□□□□ 0.65
SQSTM1-207ENST00000481335 KIF3BO15066 747 aa19.08■□□□□ 0.64
SQSTM1-207ENST00000481335 SHANK2Q9UPX8 1470 aa19.08■□□□□ 0.64
SQSTM1-207ENST00000481335 CERKQ8TCT0 537 aa19.07■□□□□ 0.64
SQSTM1-207ENST00000481335 PTPN23Q9H3S7 1636 aa19.06■□□□□ 0.64
SQSTM1-207ENST00000481335 A2ML1A8K2U0 1454 aa19.05■□□□□ 0.64
SQSTM1-207ENST00000481335 DUOX2Q9NRD8 1548 aa19.04■□□□□ 0.64
SQSTM1-207ENST00000481335 TCOF1Q13428 1488 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-207ENST00000481335 DNMT1P26358 1616 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-207ENST00000481335 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
SQSTM1-207ENST00000481335 WASHC2CQ9Y4E1 1318 aa19.02■□□□□ 0.64
SQSTM1-207ENST00000481335 PKD2Q13563 968 aa19.02■□□□□ 0.64
SQSTM1-207ENST00000481335 TNRQ92752 1358 aa19■□□□□ 0.63
SQSTM1-207ENST00000481335 POLR1AO95602 1720 aaPredicted RBP19■□□□□ 0.63
SQSTM1-207ENST00000481335 LTBP4Q8N2S1 1624 aa19■□□□□ 0.63
SQSTM1-207ENST00000481335 MROH1Q8NDA8 1641 aa19■□□□□ 0.63
SQSTM1-207ENST00000481335 ABCC3O15438 1527 aa19■□□□□ 0.63
SQSTM1-207ENST00000481335 FGD6Q6ZV73 1430 aa19■□□□□ 0.63
SQSTM1-207ENST00000481335 NLRP1Q9C000 1473 aa18.99■□□□□ 0.63
SQSTM1-207ENST00000481335 ERBINQ96RT1 1412 aa18.99■□□□□ 0.63
SQSTM1-207ENST00000481335 PRDM15P57071 1507 aaPredicted RBP18.97■□□□□ 0.63
SQSTM1-207ENST00000481335 ABCC5O15440 1437 aa18.97■□□□□ 0.63
SQSTM1-207ENST00000481335 SPATA31D1Q6ZQQ2 1576 aa18.97■□□□□ 0.63
SQSTM1-207ENST00000481335 DAPK1P53355 1430 aa18.96■□□□□ 0.63
SQSTM1-207ENST00000481335 KIF15Q9NS87 1388 aa18.95■□□□□ 0.62
SQSTM1-207ENST00000481335 DEPDC5O75140 1603 aa18.95■□□□□ 0.62
SQSTM1-207ENST00000481335 CEP152O94986 1710 aa18.94■□□□□ 0.62
SQSTM1-207ENST00000481335 UGGT1Q9NYU2 1555 aa18.92■□□□□ 0.62
SQSTM1-207ENST00000481335 FBXO31Q5XUX0 539 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-207ENST00000481335 NCKAP5LQ9HCH0 1330 aa18.91■□□□□ 0.62
SQSTM1-207ENST00000481335 ARHGAP31Q2M1Z3 1444 aa18.91■□□□□ 0.62
SQSTM1-207ENST00000481335 ERVK-7P63135 1459 aa18.9■□□□□ 0.62
SQSTM1-207ENST00000481335 NEURL4Q96JN8 1562 aa18.9■□□□□ 0.62
SQSTM1-207ENST00000481335 ANKRD30AQ9BXX3 1397 aa18.9■□□□□ 0.62
SQSTM1-207ENST00000481335 ADGRL2O95490 1459 aa18.89■□□□□ 0.61
SQSTM1-207ENST00000481335 THEMISQ8N1K5 641 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-207ENST00000481335 MED14O60244 1454 aa18.86■□□□□ 0.61
SQSTM1-207ENST00000481335 LMTK2Q8IWU2 1503 aa18.85■□□□□ 0.61
SQSTM1-207ENST00000481335 VWDEQ8N2E2 1590 aa18.85■□□□□ 0.61
SQSTM1-207ENST00000481335 CFAP65Q6ZU64 1925 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-207ENST00000481335 KANK1Q14678 1352 aa18.84■□□□□ 0.61
SQSTM1-207ENST00000481335 UBR1Q8IWV7 1749 aa18.84■□□□□ 0.61
SQSTM1-207ENST00000481335 RRP7BPQ9NSQ0 103 aa18.84■□□□□ 0.61
SQSTM1-207ENST00000481335 ZNF335Q9H4Z2 1342 aaPredicted RBP18.83■□□□□ 0.61
SQSTM1-207ENST00000481335 ANKLE2Q86XL3 938 aa18.83■□□□□ 0.6
SQSTM1-207ENST00000481335 CPS1P31327 1500 aa18.83■□□□□ 0.6
SQSTM1-207ENST00000481335 KDM5AP29375 1690 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-207ENST00000481335 IQGAP1P46940 1657 aa18.82■□□□□ 0.6
SQSTM1-207ENST00000481335 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.82■□□□□ 0.61e-6■□□□□ 11.1
SQSTM1-207ENST00000481335 NPHP4O75161 1426 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-207ENST00000481335 EFCAB6Q5THR3 1501 aa18.78■□□□□ 0.6
SQSTM1-207ENST00000481335 SLIT1O75093 1534 aa18.77■□□□□ 0.6
SQSTM1-207ENST00000481335 ARHGAP23Q9P227 1491 aa18.76■□□□□ 0.59
SQSTM1-207ENST00000481335 ANKRD50Q9ULJ7 1429 aa18.75■□□□□ 0.59
SQSTM1-207ENST00000481335 CHIC2Q9UKJ5 165 aa18.75■□□□□ 0.59
SQSTM1-207ENST00000481335 RPRD2Q5VT52 1461 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-207ENST00000481335 SCAF11Q99590 1463 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-207ENST00000481335 FAM50AQ14320 339 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-207ENST00000481335 PIK3C2BO00750 1634 aa18.74■□□□□ 0.59
SQSTM1-207ENST00000481335 SYNMO15061 1565 aa18.73■□□□□ 0.59
SQSTM1-207ENST00000481335 ROCK1Q13464 1354 aa18.72■□□□□ 0.59
SQSTM1-207ENST00000481335 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
SQSTM1-207ENST00000481335 TET3O43151 1660 aa18.72■□□□□ 0.59
SQSTM1-207ENST00000481335 UNC13BO14795 1591 aa18.72■□□□□ 0.59
SQSTM1-207ENST00000481335 GCC2Q8IWJ2 1684 aa18.71■□□□□ 0.59
SQSTM1-207ENST00000481335 NOS1P29475 1434 aa18.71■□□□□ 0.59
SQSTM1-207ENST00000481335 UBAP1LF5GYI3 381 aa18.67■□□□□ 0.58
SQSTM1-207ENST00000481335 ADGRB3O60242 1522 aa18.67■□□□□ 0.58
SQSTM1-207ENST00000481335 TMEM2Q9UHN6 1383 aa18.66■□□□□ 0.58
SQSTM1-207ENST00000481335 STRCP1A6NGW2 1772 aa18.65■□□□□ 0.58
SQSTM1-207ENST00000481335 SLC52A1Q9NWF4 448 aa18.65■□□□□ 0.58
SQSTM1-207ENST00000481335 EID1Q9Y6B2 187 aa18.65■□□□□ 0.58
SQSTM1-207ENST00000481335 IQGAP3Q86VI3 1631 aa18.64■□□□□ 0.57
SQSTM1-207ENST00000481335 TOM1O60784 492 aa18.63■□□□□ 0.57
SQSTM1-207ENST00000481335 TXNDC2Q86VQ3 553 aa18.62■□□□□ 0.57
SQSTM1-207ENST00000481335 STAG3Q9UJ98 1225 aa18.62■□□□□ 0.57
SQSTM1-207ENST00000481335 LRRC7Q96NW7 1537 aa18.61■□□□□ 0.57
SQSTM1-207ENST00000481335 LTKP29376 864 aa18.61■□□□□ 0.57
SQSTM1-207ENST00000481335 IDI1Q13907 227 aa18.61■□□□□ 0.57
SQSTM1-207ENST00000481335 SOCS7O14512 581 aa18.6■□□□□ 0.57
SQSTM1-207ENST00000481335 ILDR2Q71H61 639 aa18.6■□□□□ 0.57
SQSTM1-207ENST00000481335 E9PCH4 1651 aa18.6■□□□□ 0.57
SQSTM1-207ENST00000481335 MYO5BQ9ULV0 1848 aa18.57■□□□□ 0.56
SQSTM1-207ENST00000481335 RRBP1Q9P2E9 1410 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-207ENST00000481335 TMEM131LA2VDJ0 1609 aa18.56■□□□□ 0.56
SQSTM1-207ENST00000481335 ALKQ9UM73 1620 aa18.56■□□□□ 0.56
SQSTM1-207ENST00000481335 DISP3Q9P2K9 1392 aa18.55■□□□□ 0.56
SQSTM1-207ENST00000481335 XIRP1Q702N8 1843 aaKnown RBP18.54■□□□□ 0.56
SQSTM1-207ENST00000481335 ZFYVE9O95405 1425 aa18.53■□□□□ 0.56
SQSTM1-207ENST00000481335 NWD1Q149M9 1564 aa18.53■□□□□ 0.56
SQSTM1-207ENST00000481335 HDGFP51858 240 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-207ENST00000481335 NKTRP30414 1462 aaKnown RBP18.52■□□□□ 0.55
SQSTM1-207ENST00000481335 NUP155O75694 1391 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms