RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 LMTK3Q96Q04 1460 aa18.79■□□□□ 0.6
PTPRF-213ENST00000481019 CNTLNQ9NXG0 1405 aa18.79■□□□□ 0.6
PTPRF-213ENST00000481019 RRBP1Q9P2E9 1410 aaKnown RBP18.79■□□□□ 0.6
PTPRF-213ENST00000481019 ZMYM3Q14202 1370 aa18.79■□□□□ 0.6
PTPRF-213ENST00000481019 ANKRD30AQ9BXX3 1397 aa18.79■□□□□ 0.6
PTPRF-213ENST00000481019 ESF1Q9H501 851 aaKnown RBP18.78■□□□□ 0.6
PTPRF-213ENST00000481019 ITGAEP38570 1179 aa18.77■□□□□ 0.6
PTPRF-213ENST00000481019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.76■□□□□ 0.599e-9■□□□□ 9
PTPRF-213ENST00000481019 ERBINQ96RT1 1412 aa18.75■□□□□ 0.59
PTPRF-213ENST00000481019 KDM5DQ9BY66 1539 aa18.74■□□□□ 0.59
PTPRF-213ENST00000481019 PPP6R1Q9UPN7 881 aa18.74■□□□□ 0.59
PTPRF-213ENST00000481019 ABCC3O15438 1527 aa18.73■□□□□ 0.59
PTPRF-213ENST00000481019 PREX1Q8TCU6 1659 aa18.73■□□□□ 0.59
PTPRF-213ENST00000481019 DEPDC5O75140 1603 aa18.72■□□□□ 0.59
PTPRF-213ENST00000481019 HSPA2P54652 639 aa18.72■□□□□ 0.59
PTPRF-213ENST00000481019 WASHC2CQ9Y4E1 1318 aa18.72■□□□□ 0.59
PTPRF-213ENST00000481019 CEP152O94986 1710 aa18.71■□□□□ 0.59
PTPRF-213ENST00000481019 PRDM15P57071 1507 aaPredicted RBP18.7■□□□□ 0.58
PTPRF-213ENST00000481019 FBXO31Q5XUX0 539 aaPredicted RBP18.7■□□□□ 0.58
PTPRF-213ENST00000481019 ROCK1Q13464 1354 aa18.69■□□□□ 0.58
PTPRF-213ENST00000481019 FAM135AQ9P2D6 1515 aa18.69■□□□□ 0.58
PTPRF-213ENST00000481019 NPATQ14207 1427 aa18.68■□□□□ 0.58
PTPRF-213ENST00000481019 ANKRD50Q9ULJ7 1429 aa18.68■□□□□ 0.58
PTPRF-213ENST00000481019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.68■□□□□ 0.58
PTPRF-213ENST00000481019 ZC3H13Q5T200 1668 aaKnown RBP18.66■□□□□ 0.58
PTPRF-213ENST00000481019 SETD1BQ9UPS6 1966 aaKnown RBP18.66■□□□□ 0.58
PTPRF-213ENST00000481019 PZPP20742 1482 aa18.66■□□□□ 0.58
PTPRF-213ENST00000481019 VWDEQ8N2E2 1590 aa18.66■□□□□ 0.58
PTPRF-213ENST00000481019 CAMSAP1Q5T5Y3 1602 aa18.66■□□□□ 0.58
PTPRF-213ENST00000481019 UHRF1BP1Q6BDS2 1440 aa18.66■□□□□ 0.58
PTPRF-213ENST00000481019 MYO3AQ8NEV4 1616 aa18.64■□□□□ 0.57
PTPRF-213ENST00000481019 UNC13BO14795 1591 aa18.6■□□□□ 0.57
PTPRF-213ENST00000481019 CFAP65Q6ZU64 1925 aaKnown RBP18.6■□□□□ 0.57
PTPRF-213ENST00000481019 LMTK2Q8IWU2 1503 aa18.59■□□□□ 0.57
PTPRF-213ENST00000481019 TNRQ92752 1358 aa18.59■□□□□ 0.57
PTPRF-213ENST00000481019 SPATA31D1Q6ZQQ2 1576 aa18.59■□□□□ 0.57
PTPRF-213ENST00000481019 ERVK-7P63135 1459 aa18.58■□□□□ 0.57
PTPRF-213ENST00000481019 NAIPQ13075 1403 aa18.58■□□□□ 0.57
PTPRF-213ENST00000481019 ZNF142P52746 1687 aaPredicted RBP18.58■□□□□ 0.57
PTPRF-213ENST00000481019 CEP170BQ9Y4F5 1589 aaPredicted RBP18.58■□□□□ 0.56
PTPRF-213ENST00000481019 STRCQ7RTU9 1775 aa18.58■□□□□ 0.56
PTPRF-213ENST00000481019 KANK1Q14678 1352 aa18.57■□□□□ 0.56
PTPRF-213ENST00000481019 ARHGAP31Q2M1Z3 1444 aa18.57■□□□□ 0.56
PTPRF-213ENST00000481019 EFCAB6Q5THR3 1501 aa18.55■□□□□ 0.56
PTPRF-213ENST00000481019 GCC2Q8IWJ2 1684 aa18.55■□□□□ 0.56
PTPRF-213ENST00000481019 A2ML1A8K2U0 1454 aa18.53■□□□□ 0.56
PTPRF-213ENST00000481019 IQGAP3Q86VI3 1631 aa18.52■□□□□ 0.55
PTPRF-213ENST00000481019 TET3O43151 1660 aa18.51■□□□□ 0.55
PTPRF-213ENST00000481019 HFM1A2PYH4 1435 aa18.51■□□□□ 0.55
PTPRF-213ENST00000481019 SYNMO15061 1565 aa18.51■□□□□ 0.55
PTPRF-213ENST00000481019 NUP155O75694 1391 aa18.5■□□□□ 0.55
PTPRF-213ENST00000481019 E9PCH4 1651 aa18.48■□□□□ 0.55
PTPRF-213ENST00000481019 NLRP1Q9C000 1473 aa18.48■□□□□ 0.55
PTPRF-213ENST00000481019 NOS1P29475 1434 aa18.48■□□□□ 0.55
PTPRF-213ENST00000481019 NCKAP5LQ9HCH0 1330 aa18.48■□□□□ 0.55
PTPRF-213ENST00000481019 UGGT1Q9NYU2 1555 aa18.46■□□□□ 0.55
PTPRF-213ENST00000481019 UBR1Q8IWV7 1749 aa18.45■□□□□ 0.54
PTPRF-213ENST00000481019 PIK3C2BO00750 1634 aa18.45■□□□□ 0.54
PTPRF-213ENST00000481019 PLA2R1Q13018 1463 aa18.44■□□□□ 0.54
PTPRF-213ENST00000481019 RPRD2Q5VT52 1461 aaKnown RBP18.43■□□□□ 0.54
PTPRF-213ENST00000481019 IDI1Q13907 227 aa18.42■□□□□ 0.54
PTPRF-213ENST00000481019 NEURL4Q96JN8 1562 aa18.41■□□□□ 0.54
PTPRF-213ENST00000481019 PTPRTO14522 1441 aa18.39■□□□□ 0.53
PTPRF-213ENST00000481019 THEMISQ8N1K5 641 aaPredicted RBP18.38■□□□□ 0.53
PTPRF-213ENST00000481019 TRIM52Q96A61 297 aa18.38■□□□□ 0.53
PTPRF-213ENST00000481019 POLR1AO95602 1720 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-213ENST00000481019 PKD2Q13563 968 aa18.36■□□□□ 0.53
PTPRF-213ENST00000481019 MYO5BQ9ULV0 1848 aa18.35■□□□□ 0.53
PTPRF-213ENST00000481019 ADGRB3O60242 1522 aa18.35■□□□□ 0.53
PTPRF-213ENST00000481019 ARHGAP23Q9P227 1491 aa18.35■□□□□ 0.53
PTPRF-213ENST00000481019 SETD5Q9C0A6 1442 aa18.35■□□□□ 0.53
PTPRF-213ENST00000481019 DMRT2Q9Y5R5 561 aa18.34■□□□□ 0.53
PTPRF-213ENST00000481019 SLIT1O75093 1534 aa18.33■□□□□ 0.53
PTPRF-213ENST00000481019 SPHKAPQ2M3C7 1700 aa18.33■□□□□ 0.52
PTPRF-213ENST00000481019 LTKP29376 864 aa18.33■□□□□ 0.52
PTPRF-213ENST00000481019 KDM5AP29375 1690 aaKnown RBP18.32■□□□□ 0.52
PTPRF-213ENST00000481019 TMEM131LA2VDJ0 1609 aa18.32■□□□□ 0.52
PTPRF-213ENST00000481019 ANKLE2Q86XL3 938 aa18.32■□□□□ 0.52
PTPRF-213ENST00000481019 SLC52A1Q9NWF4 448 aa18.32■□□□□ 0.52
PTPRF-213ENST00000481019 RAB3GAP2Q9H2M9 1393 aa18.31■□□□□ 0.52
PTPRF-213ENST00000481019 FOXD1Q16676 465 aa18.31■□□□□ 0.52
PTPRF-213ENST00000481019 MED14O60244 1454 aa18.31■□□□□ 0.52
PTPRF-213ENST00000481019 TMEM2Q9UHN6 1383 aa18.3■□□□□ 0.52
PTPRF-213ENST00000481019 SLC4A1APQ9BWU0 796 aaKnown RBP18.3■□□□□ 0.52
PTPRF-213ENST00000481019 NPHP4O75161 1426 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-213ENST00000481019 STAG3Q9UJ98 1225 aa18.29■□□□□ 0.52
PTPRF-213ENST00000481019 CLTCL1P53675 1640 aa18.29■□□□□ 0.52
PTPRF-213ENST00000481019 LTBP4Q8N2S1 1624 aa18.29■□□□□ 0.52
PTPRF-213ENST00000481019 ZNF335Q9H4Z2 1342 aaPredicted RBP18.28■□□□□ 0.52
PTPRF-213ENST00000481019 SCAF11Q99590 1463 aaKnown RBP18.28■□□□□ 0.52
PTPRF-213ENST00000481019 TRPM2O94759 1503 aa18.28■□□□□ 0.52
PTPRF-213ENST00000481019 IQGAP1P46940 1657 aa18.28■□□□□ 0.52
PTPRF-213ENST00000481019 TXNDC2Q86VQ3 553 aa18.27■□□□□ 0.52
PTPRF-213ENST00000481019 ZFYVE9O95405 1425 aa18.26■□□□□ 0.51
PTPRF-213ENST00000481019 CHGAP10645 457 aaKnown RBP18.26■□□□□ 0.51
PTPRF-213ENST00000481019 MPHOSPH9Q99550 1183 aa18.26■□□□□ 0.51
PTPRF-213ENST00000481019 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-213ENST00000481019 NUTM2DQ5VT03 806 aaPredicted RBP18.23■□□□□ 0.51
PTPRF-213ENST00000481019 CERKQ8TCT0 537 aa18.23■□□□□ 0.51
PTPRF-213ENST00000481019 RIMS2Q9UQ26 1411 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms