RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	ARHGAP31	Q2M1Z3	1444 aa		7.8	□□□□□ -1.16
HDAC6-223	ENST00000480525	KIF15	Q9NS87	1388 aa		7.8	□□□□□ -1.16
HDAC6-223	ENST00000480525	PTPRM	P28827	1452 aa		7.8	□□□□□ -1.16
HDAC6-223	ENST00000480525	KDM5A	P29375	1690 aa	Known RBP	7.79	□□□□□ -1.16
HDAC6-223	ENST00000480525	HFM1	A2PYH4	1435 aa		7.79	□□□□□ -1.16
HDAC6-223	ENST00000480525	RPRD2	Q5VT52	1461 aa	Known RBP	7.79	□□□□□ -1.16
HDAC6-223	ENST00000480525	C3	P01024	1663 aa		7.79	□□□□□ -1.16
HDAC6-223	ENST00000480525	RIMS1	Q86UR5	1692 aa	Known RBP	7.79	□□□□□ -1.16
HDAC6-223	ENST00000480525	KDM4F	A0A1W2PPD8	638 aa		7.78	□□□□□ -1.16
HDAC6-223	ENST00000480525	PREX1	Q8TCU6	1659 aa		7.78	□□□□□ -1.16
HDAC6-223	ENST00000480525	IQGAP3	Q86VI3	1631 aa		7.78	□□□□□ -1.16
HDAC6-223	ENST00000480525	ANKRD50	Q9ULJ7	1429 aa		7.78	□□□□□ -1.16
HDAC6-223	ENST00000480525	ZNF142	P52746	1687 aa	Predicted RBP	7.77	□□□□□ -1.17
HDAC6-223	ENST00000480525	PZP	P20742	1482 aa		7.77	□□□□□ -1.17
HDAC6-223	ENST00000480525	ABCC3	O15438	1527 aa		7.77	□□□□□ -1.17
HDAC6-223	ENST00000480525	PTPRK	Q15262	1439 aa		7.77	□□□□□ -1.17
HDAC6-223	ENST00000480525	TET3	O43151	1660 aa		7.76	□□□□□ -1.17
HDAC6-223	ENST00000480525	CLTC	Q00610	1675 aa	Known RBP	7.76	□□□□□ -1.17
HDAC6-223	ENST00000480525	CAMSAP1	Q5T5Y3	1602 aa		7.76	□□□□□ -1.17
HDAC6-223	ENST00000480525	NAIP	Q13075	1403 aa		7.75	□□□□□ -1.17
HDAC6-223	ENST00000480525	SPATA31D1	Q6ZQQ2	1576 aa		7.75	□□□□□ -1.17
HDAC6-223	ENST00000480525	EFCAB6	Q5THR3	1501 aa		7.74	□□□□□ -1.17
HDAC6-223	ENST00000480525	HRC	P23327	699 aa		7.74	□□□□□ -1.17
HDAC6-223	ENST00000480525	NLRP1	Q9C000	1473 aa		7.74	□□□□□ -1.17
HDAC6-223	ENST00000480525	KANK1	Q14678	1352 aa		7.73	□□□□□ -1.17
HDAC6-223	ENST00000480525	CEP152	O94986	1710 aa		7.73	□□□□□ -1.17
HDAC6-223	ENST00000480525	FAM50A	Q14320	339 aa	Known RBP	7.73	□□□□□ -1.17
HDAC6-223	ENST00000480525	ARID4B	Q4LE39	1312 aa	Predicted RBP	7.73	□□□□□ -1.17
HDAC6-223	ENST00000480525	MYT1L	Q9UL68	1186 aa		7.72	□□□□□ -1.17
HDAC6-223	ENST00000480525	ZMYM3	Q14202	1370 aa		7.71	□□□□□ -1.17
HDAC6-223	ENST00000480525	MYO3A	Q8NEV4	1616 aa		7.71	□□□□□ -1.17
HDAC6-223	ENST00000480525	PLA2R1	Q13018	1463 aa		7.71	□□□□□ -1.18
HDAC6-223	ENST00000480525	KIF3B	O15066	747 aa		7.71	□□□□□ -1.18
HDAC6-223	ENST00000480525	NEURL4	Q96JN8	1562 aa		7.71	□□□□□ -1.18
HDAC6-223	ENST00000480525	PIK3C2B	O00750	1634 aa		7.7	□□□□□ -1.18
HDAC6-223	ENST00000480525	LMTK3	Q96Q04	1460 aa		7.7	□□□□□ -1.18
HDAC6-223	ENST00000480525	ESF1	Q9H501	851 aa	Known RBP	7.7	□□□□□ -1.18
HDAC6-223	ENST00000480525	NOS1	P29475	1434 aa		7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525	ERVK-7	P63135	1459 aa		7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525	WASHC2C	Q9Y4E1	1318 aa		7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525		E9PCH4	1651 aa		7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525	UHRF1BP1	Q6BDS2	1440 aa		7.69	□□□□□ -1.18
HDAC6-223	ENST00000480525	A2ML1	A8K2U0	1454 aa		7.68	□□□□□ -1.18
HDAC6-223	ENST00000480525	RRP7BP	Q9NSQ0	103 aa		7.68	□□□□□ -1.18
HDAC6-223	ENST00000480525	SPHKAP	Q2M3C7	1700 aa		7.68	□□□□□ -1.18
HDAC6-223	ENST00000480525	PTPRT	O14522	1441 aa		7.68	□□□□□ -1.18
HDAC6-223	ENST00000480525	GGT6	Q6P531	493 aa		7.67	□□□□□ -1.18
HDAC6-223	ENST00000480525	SETD5	Q9C0A6	1442 aa		7.66	□□□□□ -1.18
HDAC6-223	ENST00000480525	TRPM2	O94759	1503 aa		7.66	□□□□□ -1.18
HDAC6-223	ENST00000480525	POLR1A	O95602	1720 aa	Predicted RBP	7.66	□□□□□ -1.18
HDAC6-223	ENST00000480525	UBR1	Q8IWV7	1749 aa		7.66	□□□□□ -1.18
HDAC6-223	ENST00000480525	SYNM	O15061	1565 aa		7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	SLIT1	O75093	1534 aa		7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	AEBP2	Q6ZN18	517 aa	Predicted RBP	7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	TNR	Q92752	1358 aa		7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	SLC52A1	Q9NWF4	448 aa		7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	CHIC2	Q9UKJ5	165 aa		7.65	□□□□□ -1.18
HDAC6-223	ENST00000480525	ARHGAP23	Q9P227	1491 aa		7.64	□□□□□ -1.19
HDAC6-223	ENST00000480525	NUP155	O75694	1391 aa		7.64	□□□□□ -1.19
HDAC6-223	ENST00000480525	CFAP65	Q6ZU64	1925 aa	Known RBP	7.64	□□□□□ -1.19
HDAC6-223	ENST00000480525	STRC	Q7RTU9	1775 aa		7.64	□□□□□ -1.19
HDAC6-223	ENST00000480525	UGGT1	Q9NYU2	1555 aa		7.63	□□□□□ -1.19
HDAC6-223	ENST00000480525	ADGRB3	O60242	1522 aa		7.63	□□□□□ -1.19
HDAC6-223	ENST00000480525	MED14	O60244	1454 aa		7.63	□□□□□ -1.19
HDAC6-223	ENST00000480525	MLEC	Q14165	292 aa		7.63	□□□□□ -1.19
HDAC6-223	ENST00000480525	KIF1B	O60333	1816 aa		7.63	□□□□□ -1.19
HDAC6-223	ENST00000480525	TMEM131L	A2VDJ0	1609 aa		7.62	□□□□□ -1.19
HDAC6-223	ENST00000480525	PPARGC1B	Q86YN6	1023 aa	Known RBP	7.61	□□□□□ -1.19
HDAC6-223	ENST00000480525	RAB3GAP2	Q9H2M9	1393 aa		7.6	□□□□□ -1.19
HDAC6-223	ENST00000480525	PKD2	Q13563	968 aa		7.6	□□□□□ -1.19
HDAC6-223	ENST00000480525	THEMIS	Q8N1K5	641 aa	Predicted RBP	7.6	□□□□□ -1.19
HDAC6-223	ENST00000480525	DMRT2	Q9Y5R5	561 aa		7.6	□□□□□ -1.19
HDAC6-223	ENST00000480525	TRIM26	Q12899	539 aa	Predicted RBP	7.59	□□□□□ -1.19
HDAC6-223	ENST00000480525	ZFYVE9	O95405	1425 aa		7.59	□□□□□ -1.19
HDAC6-223	ENST00000480525	MYO5B	Q9ULV0	1848 aa		7.59	□□□□□ -1.19
HDAC6-223	ENST00000480525	DIP2A	Q14689	1571 aa		7.59	□□□□□ -1.2
HDAC6-223	ENST00000480525	IQGAP1	P46940	1657 aa		7.58	□□□□□ -1.2
HDAC6-223	ENST00000480525	IQSEC2	Q5JU85	1478 aa		7.58	□□□□□ -1.2
HDAC6-223	ENST00000480525	CEBPA	P49715	358 aa	Predicted RBP	7.58	□□□□□ -1.2
HDAC6-223	ENST00000480525	STAC3	Q96MF2	364 aa		7.58	□□□□□ -1.2
HDAC6-223	ENST00000480525	IFT172	Q9UG01	1749 aa		7.58	□□□□□ -1.2
HDAC6-223	ENST00000480525	SCAF11	Q99590	1463 aa	Known RBP	7.57	□□□□□ -1.2
HDAC6-223	ENST00000480525	CLTCL1	P53675	1640 aa		7.57	□□□□□ -1.2
HDAC6-223	ENST00000480525	ITGAE	P38570	1179 aa		7.57	□□□□□ -1.2
HDAC6-223	ENST00000480525	TMEM2	Q9UHN6	1383 aa		7.57	□□□□□ -1.2
HDAC6-223	ENST00000480525	PPL	O60437	1756 aa		7.56	□□□□□ -1.2
HDAC6-223	ENST00000480525	SETBP1	Q9Y6X0	1596 aa		7.56	□□□□□ -1.2
HDAC6-223	ENST00000480525	PRAG1	Q86YV5	1406 aa		7.56	□□□□□ -1.2
HDAC6-223	ENST00000480525	HDGF	P51858	240 aa	Known RBP	7.56	□□□□□ -1.2
HDAC6-223	ENST00000480525	FBXO31	Q5XUX0	539 aa	Predicted RBP	7.56	□□□□□ -1.2
HDAC6-223	ENST00000480525	RPGRIP1L	Q68CZ1	1315 aa		7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	IDI1	Q13907	227 aa		7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	MPHOSPH9	Q99550	1183 aa		7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	SLC4A1AP	Q9BWU0	796 aa	Known RBP	7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	PIK3R4	Q99570	1358 aa		7.55	□□□□□ -1.2
HDAC6-223	ENST00000480525	CCDC144A	A2RUR9	1427 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	SPATA31E1	Q6ZUB1	1445 aa		7.54	□□□□□ -1.2
HDAC6-223	ENST00000480525	NEXMIF	Q5QGS0	1516 aa		7.54	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms