RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 UNC13BO14795 1591 aa25.85■■□□□ 1.73
UPF3A-206ENST00000480362 SLC4A1APQ9BWU0 796 aaKnown RBP25.83■■□□□ 1.73
UPF3A-206ENST00000480362 PZPP20742 1482 aa25.83■■□□□ 1.73
UPF3A-206ENST00000480362 KDM5DQ9BY66 1539 aa25.82■■□□□ 1.72
UPF3A-206ENST00000480362 CLSPNQ9HAW4 1339 aa25.8■■□□□ 1.72
UPF3A-206ENST00000480362 ARHGEF40Q8TER5 1519 aa25.79■■□□□ 1.72
UPF3A-206ENST00000480362 DEPDC5O75140 1603 aa25.77■■□□□ 1.72
UPF3A-206ENST00000480362 REREQ9P2R6 1566 aa25.77■■□□□ 1.72
UPF3A-206ENST00000480362 BCORL1Q5H9F3 1711 aa25.76■■□□□ 1.71
UPF3A-206ENST00000480362 FAM135AQ9P2D6 1515 aa25.75■■□□□ 1.71
UPF3A-206ENST00000480362 IQGAP3Q86VI3 1631 aa25.74■■□□□ 1.71
UPF3A-206ENST00000480362 KANK1Q14678 1352 aa25.74■■□□□ 1.71
UPF3A-206ENST00000480362 PKD2Q13563 968 aa25.74■■□□□ 1.71
UPF3A-206ENST00000480362 GGT6Q6P531 493 aa25.74■■□□□ 1.71
UPF3A-206ENST00000480362 RNF17Q9BXT8 1623 aaKnown RBP25.74■■□□□ 1.71
UPF3A-206ENST00000480362 FOXD1Q16676 465 aa25.73■■□□□ 1.71
UPF3A-206ENST00000480362 MROH1Q8NDA8 1641 aa25.73■■□□□ 1.71
UPF3A-206ENST00000480362 ZEB1P37275 1124 aaPredicted RBP25.71■■□□□ 1.71
UPF3A-206ENST00000480362 AGLP35573 1532 aa25.71■■□□□ 1.71
UPF3A-206ENST00000480362 PRDM15P57071 1507 aaPredicted RBP25.71■■□□□ 1.71
UPF3A-206ENST00000480362 VWDEQ8N2E2 1590 aa25.69■■□□□ 1.7
UPF3A-206ENST00000480362 SIGLEC1Q9BZZ2 1709 aa25.66■■□□□ 1.7
UPF3A-206ENST00000480362 SIN3AQ96ST3 1273 aa25.65■■□□□ 1.7
UPF3A-206ENST00000480362 ANKRD30BQ9BXX2 1392 aa25.63■■□□□ 1.69
UPF3A-206ENST00000480362 WASHC2CQ9Y4E1 1318 aa25.63■■□□□ 1.69
UPF3A-206ENST00000480362 ARID4BQ4LE39 1312 aaPredicted RBP25.62■■□□□ 1.69
UPF3A-206ENST00000480362 NEUROD1Q13562 356 aa25.61■■□□□ 1.69
UPF3A-206ENST00000480362 TET3O43151 1660 aa25.61■■□□□ 1.69
UPF3A-206ENST00000480362 LMTK2Q8IWU2 1503 aa25.6■■□□□ 1.69
UPF3A-206ENST00000480362 CEP152O94986 1710 aa25.6■■□□□ 1.69
UPF3A-206ENST00000480362 MLECQ14165 292 aa25.59■■□□□ 1.69
UPF3A-206ENST00000480362 PPP6R1Q9UPN7 881 aa25.58■■□□□ 1.69
UPF3A-206ENST00000480362 ABCC3O15438 1527 aa25.58■■□□□ 1.68
UPF3A-206ENST00000480362 E9PCH4 1651 aa25.55■■□□□ 1.68
UPF3A-206ENST00000480362 EFCAB6Q5THR3 1501 aa25.53■■□□□ 1.68
UPF3A-206ENST00000480362 ZC3H13Q5T200 1668 aaKnown RBP25.53■■□□□ 1.68
UPF3A-206ENST00000480362 PLA2R1Q13018 1463 aa25.5■■□□□ 1.67
UPF3A-206ENST00000480362 CAMSAP1Q5T5Y3 1602 aa25.5■■□□□ 1.67
UPF3A-206ENST00000480362 RPRD2Q5VT52 1461 aaKnown RBP25.47■■□□□ 1.67
UPF3A-206ENST00000480362 NPATQ14207 1427 aa25.46■■□□□ 1.67
UPF3A-206ENST00000480362 ESF1Q9H501 851 aaKnown RBP25.46■■□□□ 1.67
UPF3A-206ENST00000480362 TIMELESSQ9UNS1 1208 aa25.46■■□□□ 1.67
UPF3A-206ENST00000480362 PTPRTO14522 1441 aa25.46■■□□□ 1.67
UPF3A-206ENST00000480362 ARHGAP31Q2M1Z3 1444 aa25.46■■□□□ 1.67
UPF3A-206ENST00000480362 CLTCQ00610 1675 aaKnown RBP25.45■■□□□ 1.67
UPF3A-206ENST00000480362 TONSLQ96HA7 1378 aa25.44■■□□□ 1.66
UPF3A-206ENST00000480362 SPHKAPQ2M3C7 1700 aa25.43■■□□□ 1.66
UPF3A-206ENST00000480362 CCDC144AA2RUR9 1427 aa25.43■■□□□ 1.66
UPF3A-206ENST00000480362 TRPM2O94759 1503 aa25.4■■□□□ 1.66
UPF3A-206ENST00000480362 CFAP65Q6ZU64 1925 aaKnown RBP25.39■■□□□ 1.65
UPF3A-206ENST00000480362 CNTLNQ9NXG0 1405 aa25.37■■□□□ 1.65
UPF3A-206ENST00000480362 ZMYM3Q14202 1370 aa25.36■■□□□ 1.65
UPF3A-206ENST00000480362 NOS1P29475 1434 aa25.36■■□□□ 1.65
UPF3A-206ENST00000480362 FBXO31Q5XUX0 539 aaPredicted RBP25.35■■□□□ 1.65
UPF3A-206ENST00000480362 L3MBTL2Q969R5 705 aa25.34■■□□□ 1.65
UPF3A-206ENST00000480362 CLTCL1P53675 1640 aa25.34■■□□□ 1.65
UPF3A-206ENST00000480362 PREX1Q8TCU6 1659 aa25.32■■□□□ 1.64
UPF3A-206ENST00000480362 PPP1R15AO75807 674 aaPredicted RBP25.31■■□□□ 1.64
UPF3A-206ENST00000480362 FER1L4A9Z1Z3 1794 aa25.31■■□□□ 1.64
UPF3A-206ENST00000480362 UGGT1Q9NYU2 1555 aa25.31■■□□□ 1.64
UPF3A-206ENST00000480362 MROH2AA6NES4 1674 aa25.3■■□□□ 1.64
UPF3A-206ENST00000480362 ERVK-7P63135 1459 aa25.29■■□□□ 1.64
UPF3A-206ENST00000480362 SYNMO15061 1565 aa25.29■■□□□ 1.64
UPF3A-206ENST00000480362 RGL3Q3MIN7 710 aa25.27■■□□□ 1.64
UPF3A-206ENST00000480362 SLC52A1Q9NWF4 448 aa25.25■■□□□ 1.63
UPF3A-206ENST00000480362 SPATA31D1Q6ZQQ2 1576 aa25.25■■□□□ 1.63
UPF3A-206ENST00000480362 ADAMTSL3P82987 1691 aa25.25■■□□□ 1.63
UPF3A-206ENST00000480362 MADDQ8WXG6 1647 aa25.24■■□□□ 1.63
UPF3A-206ENST00000480362 SPATA31E1Q6ZUB1 1445 aa25.24■■□□□ 1.63
UPF3A-206ENST00000480362 CEBPAP49715 358 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-206ENST00000480362 IDI1Q13907 227 aa25.23■■□□□ 1.63
UPF3A-206ENST00000480362 PIK3C2BO00750 1634 aa25.23■■□□□ 1.63
UPF3A-206ENST00000480362 KIF1BO60333 1816 aa25.22■■□□□ 1.63
UPF3A-206ENST00000480362 CHGAP10645 457 aaKnown RBP25.21■■□□□ 1.63
UPF3A-206ENST00000480362 DCAF11Q8TEB1 546 aa25.21■■□□□ 1.63
UPF3A-206ENST00000480362 C3P01024 1663 aa25.2■■□□□ 1.63
UPF3A-206ENST00000480362 RIMS1Q86UR5 1692 aaKnown RBP25.2■■□□□ 1.63
UPF3A-206ENST00000480362 PLPPR3Q6T4P5 718 aa25.19■■□□□ 1.62
UPF3A-206ENST00000480362 KDM2AQ9Y2K7 1162 aa25.19■■□□□ 1.62
UPF3A-206ENST00000480362 NEURL4Q96JN8 1562 aa25.18■■□□□ 1.62
UPF3A-206ENST00000480362 TNRQ92752 1358 aa25.18■■□□□ 1.62
UPF3A-206ENST00000480362 ADGRB3O60242 1522 aa25.15■■□□□ 1.62
UPF3A-206ENST00000480362 NBPF8Q3BBV2 869 aa25.14■■□□□ 1.62
UPF3A-206ENST00000480362 ZNF326Q5BKZ1 582 aaKnown RBP25.13■■□□□ 1.61
UPF3A-206ENST00000480362 STAG3Q9UJ98 1225 aa25.1■■□□□ 1.61
UPF3A-206ENST00000480362 TMEM131LA2VDJ0 1609 aa25.09■■□□□ 1.61
UPF3A-206ENST00000480362 STAC3Q96MF2 364 aa25.09■■□□□ 1.61
UPF3A-206ENST00000480362 UHRF1BP1Q6BDS2 1440 aa25.09■■□□□ 1.61
UPF3A-206ENST00000480362 RPGRIP1LQ68CZ1 1315 aa25.09■■□□□ 1.61
UPF3A-206ENST00000480362 MYO5BQ9ULV0 1848 aa25.05■■□□□ 1.6
UPF3A-206ENST00000480362 NLRP1Q9C000 1473 aa25.04■■□□□ 1.6
UPF3A-206ENST00000480362 PRAG1Q86YV5 1406 aa25.03■■□□□ 1.6
UPF3A-206ENST00000480362 PTPRMP28827 1452 aa25.03■■□□□ 1.6
UPF3A-206ENST00000480362 IFT172Q9UG01 1749 aa25.03■■□□□ 1.6
UPF3A-206ENST00000480362 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
UPF3A-206ENST00000480362 PPLO60437 1756 aa25.01■■□□□ 1.59
UPF3A-206ENST00000480362 MYOM2P54296 1465 aa25■■□□□ 1.59
UPF3A-206ENST00000480362 NEXMIFQ5QGS0 1516 aa25■■□□□ 1.59
UPF3A-206ENST00000480362 ADGRF5Q8IZF2 1346 aa24.99■■□□□ 1.59
UPF3A-206ENST00000480362 KDM4FA0A1W2PPD8 638 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms