RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 SYCP2Q9BX26 1530 aa20.22■□□□□ 0.83
USP11-208ENST00000480104 FAM135BQ49AJ0 1406 aa20.21■□□□□ 0.83
USP11-208ENST00000480104 THEMISQ8N1K5 641 aaPredicted RBP20.2■□□□□ 0.82
USP11-208ENST00000480104 FMN1Q68DA7 1419 aa20.19■□□□□ 0.82
USP11-208ENST00000480104 FAM135AQ9P2D6 1515 aa20.18■□□□□ 0.82
USP11-208ENST00000480104 INO80Q9ULG1 1556 aaPredicted RBP20.18■□□□□ 0.82
USP11-208ENST00000480104 UGGT1Q9NYU2 1555 aa20.17■□□□□ 0.82
USP11-208ENST00000480104 TRIM52Q96A61 297 aa20.17■□□□□ 0.82
USP11-208ENST00000480104 ZNF777Q9ULD5 760 aaPredicted RBP20.16■□□□□ 0.82
USP11-208ENST00000480104 PZPP20742 1482 aa20.16■□□□□ 0.82
USP11-208ENST00000480104 NLRP1Q9C000 1473 aa20.14■□□□□ 0.81
USP11-208ENST00000480104 HNRNPMP52272 730 aaKnown RBP eCLIP20.14■□□□□ 0.81
USP11-208ENST00000480104 CDC42BPAQ5VT25 1732 aa20.12■□□□□ 0.81
USP11-208ENST00000480104 MIA2Q96PC5 1412 aa20.11■□□□□ 0.81
USP11-208ENST00000480104 XIRP1Q702N8 1843 aaKnown RBP20.1■□□□□ 0.81
USP11-208ENST00000480104 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
USP11-208ENST00000480104 LRRIQ1Q96JM4 1722 aa20.09■□□□□ 0.81
USP11-208ENST00000480104 ZC3H13Q5T200 1668 aaKnown RBP20.08■□□□□ 0.81
USP11-208ENST00000480104 KDM5DQ9BY66 1539 aa20.07■□□□□ 0.8
USP11-208ENST00000480104 JCADQ9P266 1359 aa20.06■□□□□ 0.8
USP11-208ENST00000480104 ADGBQ8N7X0 1667 aa20.05■□□□□ 0.8
USP11-208ENST00000480104 KIAA1107Q9UPP5 1409 aa20.04■□□□□ 0.8
USP11-208ENST00000480104 ARHGAP35Q9NRY4 1499 aa20.04■□□□□ 0.8
USP11-208ENST00000480104 LRP6O75581 1613 aa20.03■□□□□ 0.8
USP11-208ENST00000480104 ZNF772Q68DY9 489 aaPredicted RBP20.03■□□□□ 0.8
USP11-208ENST00000480104 PLEKHH2Q8IVE3 1493 aa20■□□□□ 0.79
USP11-208ENST00000480104 TMEM94Q12767 1356 aa20■□□□□ 0.79
USP11-208ENST00000480104 GPATCH8Q9UKJ3 1502 aaKnown RBP20■□□□□ 0.79
USP11-208ENST00000480104 SCAF11Q99590 1463 aaKnown RBP19.99■□□□□ 0.79
USP11-208ENST00000480104 WASHC2CQ9Y4E1 1318 aa19.99■□□□□ 0.79
USP11-208ENST00000480104 LRRC9Q6ZRR7 1453 aa19.99■□□□□ 0.79
USP11-208ENST00000480104 RXRBP28702 533 aa19.98■□□□□ 0.79
USP11-208ENST00000480104 MEX3CQ5U5Q3 659 aaKnown RBP19.98■□□□□ 0.79
USP11-208ENST00000480104 CDK12Q9NYV4 1490 aaPredicted RBP19.98■□□□□ 0.79
USP11-208ENST00000480104 DHX29Q7Z478 1369 aaKnown RBP19.97■□□□□ 0.79
USP11-208ENST00000480104 KIF3BO15066 747 aa19.97■□□□□ 0.79
USP11-208ENST00000480104 PHLPP1O60346 1717 aa19.96■□□□□ 0.79
USP11-208ENST00000480104 EEA1Q15075 1411 aa19.96■□□□□ 0.79
USP11-208ENST00000480104 MAP3K1Q13233 1512 aa19.96■□□□□ 0.79
USP11-208ENST00000480104 CCDC18Q5T9S5 1454 aa19.95■□□□□ 0.78
USP11-208ENST00000480104 LTKP29376 864 aa19.92■□□□□ 0.78
USP11-208ENST00000480104 CFDP1Q9UEE9 299 aaPredicted RBP19.92■□□□□ 0.78
USP11-208ENST00000480104 SPATA31A6Q5VVP1 1343 aa19.92■□□□□ 0.78
USP11-208ENST00000480104 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
USP11-208ENST00000480104 RBM33Q96EV2 1170 aaKnown RBP19.91■□□□□ 0.78
USP11-208ENST00000480104 SETBP1Q9Y6X0 1596 aa19.89■□□□□ 0.77
USP11-208ENST00000480104 NCOA2Q15596 1464 aa19.88■□□□□ 0.77
USP11-208ENST00000480104 ARHGAP23Q9P227 1491 aa19.88■□□□□ 0.77
USP11-208ENST00000480104 RTEL1-TNFRSF6BF6WH68 1400 aa19.88■□□□□ 0.77
USP11-208ENST00000480104 TXNDC2Q86VQ3 553 aa19.88■□□□□ 0.77
USP11-208ENST00000480104 ERVK-7P63135 1459 aa19.87■□□□□ 0.77
USP11-208ENST00000480104 RGS12O14924 1447 aa19.87■□□□□ 0.77
USP11-208ENST00000480104 CHIC1Q5VXU3 224 aa19.87■□□□□ 0.77
USP11-208ENST00000480104 ZRANB1Q9UGI0 708 aa19.87■□□□□ 0.77
USP11-208ENST00000480104 UBR1Q8IWV7 1749 aa19.87■□□□□ 0.77
USP11-208ENST00000480104 FGD6Q6ZV73 1430 aa19.86■□□□□ 0.77
USP11-208ENST00000480104 CASKIN1Q8WXD9 1431 aa19.86■□□□□ 0.77
USP11-208ENST00000480104 SLAIN2Q9P270 581 aa19.86■□□□□ 0.77
USP11-208ENST00000480104 SLIT1O75093 1534 aa19.86■□□□□ 0.77
USP11-208ENST00000480104 PROSER2Q86WR7 435 aaPredicted RBP19.85■□□□□ 0.77
USP11-208ENST00000480104 EHMT2Q96KQ7 1210 aa19.85■□□□□ 0.77
USP11-208ENST00000480104 MBD5Q9P267 1494 aa19.85■□□□□ 0.77
USP11-208ENST00000480104 ZNF644Q9H582 1327 aaPredicted RBP19.84■□□□□ 0.77
USP11-208ENST00000480104 CCNB3Q8WWL7 1395 aa19.83■□□□□ 0.77
USP11-208ENST00000480104 TIAM1Q13009 1591 aa19.83■□□□□ 0.77
USP11-208ENST00000480104 KCNA6P17658 529 aa19.83■□□□□ 0.77
USP11-208ENST00000480104 EP400Q96L91 3159 aa19.83■□□□□ 0.76
USP11-208ENST00000480104 MSH6P52701 1360 aa19.83■□□□□ 0.76
USP11-208ENST00000480104 PRDM15P57071 1507 aaPredicted RBP19.82■□□□□ 0.76
USP11-208ENST00000480104 UBTFP17480 764 aaKnown RBP19.82■□□□□ 0.76
USP11-208ENST00000480104 ABCC3O15438 1527 aa19.81■□□□□ 0.76
USP11-208ENST00000480104 AFF2P51816 1311 aa19.8■□□□□ 0.76
USP11-208ENST00000480104 NUTM2BA6NNL0 878 aaPredicted RBP19.8■□□□□ 0.76
USP11-208ENST00000480104 NUTM2EB1AL46 878 aaPredicted RBP19.8■□□□□ 0.76
USP11-208ENST00000480104 NUTM2DQ5VT03 806 aaPredicted RBP19.8■□□□□ 0.76
USP11-208ENST00000480104 NUTM2AQ8IVF1 878 aaPredicted RBP19.8■□□□□ 0.76
USP11-208ENST00000480104 EID1Q9Y6B2 187 aa19.79■□□□□ 0.76
USP11-208ENST00000480104 NKTRP30414 1462 aaKnown RBP19.78■□□□□ 0.76
USP11-208ENST00000480104 SHPRHQ149N8 1683 aa19.78■□□□□ 0.76
USP11-208ENST00000480104 FOXD1Q16676 465 aa19.77■□□□□ 0.76
USP11-208ENST00000480104 ATAD2Q6PL18 1390 aa19.74■□□□□ 0.75
USP11-208ENST00000480104 SLC26A8Q96RN1 970 aa19.74■□□□□ 0.75
USP11-208ENST00000480104 NWD1Q149M9 1564 aa19.73■□□□□ 0.75
USP11-208ENST00000480104 AHDC1Q5TGY3 1603 aaPredicted RBP19.73■□□□□ 0.75
USP11-208ENST00000480104 TMEM2Q9UHN6 1383 aa19.72■□□□□ 0.75
USP11-208ENST00000480104 RBM6P78332 1123 aaKnown RBP19.72■□□□□ 0.75
USP11-208ENST00000480104 FYCO1Q9BQS8 1478 aa19.72■□□□□ 0.75
USP11-208ENST00000480104 CCDC141Q6ZP82 1450 aa19.7■□□□□ 0.74
USP11-208ENST00000480104 KDM5AP29375 1690 aaKnown RBP19.69■□□□□ 0.74
USP11-208ENST00000480104 QTRT2Q9H974 415 aaKnown RBP19.69■□□□□ 0.74
USP11-208ENST00000480104 CAMSAP2Q08AD1 1489 aa19.68■□□□□ 0.74
USP11-208ENST00000480104 TET3O43151 1660 aa19.68■□□□□ 0.74
USP11-208ENST00000480104 DIP2AQ14689 1571 aa19.67■□□□□ 0.74
USP11-208ENST00000480104 C8orf37Q96NL8 207 aa19.64■□□□□ 0.73
USP11-208ENST00000480104 CFAP65Q6ZU64 1925 aaKnown RBP19.63■□□□□ 0.73
USP11-208ENST00000480104 PIK3C2BO00750 1634 aa19.63■□□□□ 0.73
USP11-208ENST00000480104 MROH1Q8NDA8 1641 aa19.63■□□□□ 0.73
USP11-208ENST00000480104 MTUS2Q5JR59 1369 aa19.62■□□□□ 0.73
USP11-208ENST00000480104 CEP152O94986 1710 aa19.61■□□□□ 0.73
USP11-208ENST00000480104 STAG3Q9UJ98 1225 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms